Rmu_co8359745.1_g000001

cleavage and polyadenylation specificity factor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8359745.1
OG0006731
Physical Location & Seq
Reverse (-)
2 .. 1019
1018 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8359745.1_g000001.1.cds

Sequence Viewer

Length: 1018 bp
atgaacggtgttggtgggaacagtggtccaggaggaggattcagtggaggtggtgcaggtggggcaacattgtatgtgggggatttgcactggtggacaacggatgcagagctggaggcggagttgtgcaagtatggagctgtgaaggaagtgaagttttttgatgagaaagccagtgggaagtcaaaaggatattgccaggtagacttctatgattctgctgctgccatggcctgcaaggatgggatgcatgggcatttgtttaatgggcggccatgtgttgttgcttttgcatcaccctatagtgttaagagaatgggggaggctcaagtgaataggaaccagcaggtaacccaaactgcacaagctcaaccaaggagggggcctaatgatgctgctgggaataaagttggtgggagtgccataacaacaggtgggaattatcaaggtggggataataacagcagaggttatgggagagctaactggggccgaggtaattctcagggtatgggaggtagaggtccaggtggtccgatgaggaataggggtggaatgagtggcagaggtataatggggaatggtggaaacgggtttgggcaaggtatgggggcaacccctcctttgatgcaccctcagtcaatgatgggtcagggctttgatccagcttttggtgctccaatgggaagaatggggagttatggaggctttccaggagctccacagcctcctttctctgggatgatgtcttcattcccaccagttgggggtgttgggctgcctggagtagctcctcatgtgaatcctgcattttttggacgagggatgcccatgggaatgatgccgacatcaggtgttgacgggcctaatatgggaatgtggccggatcctaatatggggggtggatggcctggtgaggatcatggtggtggcagagctggggagtctagttatggtgaggaagctggttctgaccatcaatatggtgagggtagtcatgatagaggtgggtggcaga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000381 GO:0000785 GO:0000790 GO:0000791 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005694 GO:0005719 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006508 GO:0006509 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0031982 GO:0032774 GO:0032991 GO:0033119 GO:0033120 GO:0033619 GO:0034097 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043230 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044530 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048024 GO:0048025 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051259 GO:0051260 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070062 GO:0070555 GO:0070887 GO:0071013 GO:0071310 GO:0071345 GO:0071347 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903311 GO:1903312 GO:1903313 GO:1903506 GO:1903508 GO:1903561 GO:1990837 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
RRM_1

Protein Analysis

339

Amino Acids

34.58

Weight (kDa)

7.09

Isoelectric Point (pI)

33.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 47
Acc36I ACCTGC 2 cut(s) 47, 337
AccB7I CCANNNNNTGG 2 cut(s) 671, 764
AccI GTMKAC 1 cut(s) 204
AciI CCGC 2 cut(s) 119, 271
AclWI GGATC 4 cut(s) 656, 881, 894, 927
AcoI YGGCCR 2 cut(s) 272, 881
AfiI CCNNNNNNNGG 9 cut(s) 35, 380, 671, 737, 764, 767, 851, 872, 896
AjnI CCWGG 6 cut(s) 28, 198, 526, 712, 781, 910
AluBI AGCT 9 cut(s) 112, 140, 368, 482, 668, 719, 791, 938, 965
AluI AGCT 9 cut(s) 112, 140, 368, 482, 668, 719, 791, 938, 965
Alw21I GWGCWC 2 cut(s) 679, 721
AlwI GGATC 4 cut(s) 656, 881, 894, 927
AoxI GGCC 7 cut(s) 231, 272, 383, 490, 863, 881, 908
ApeKI GCWGC 4 cut(s) 221, 224, 395, 778
AspS9I GGNCC 6 cut(s) 26, 383, 490, 524, 533, 863
AsuHPI GGTGA 4 cut(s) 288, 926, 968, 998
AvaII GGWCC 3 cut(s) 26, 524, 533
BamHI GGATCC 1 cut(s) 886
BanII GRGCYC 1 cut(s) 721
BbsI GAAGAC 1 cut(s) 741
Bbv12I GWGCWC 2 cut(s) 679, 721
BbvI GCAGC 4 cut(s) 208, 211, 382, 765
BccI CCATC 4 cut(s) 236, 640, 900, 984
BciT130I CCWGG 6 cut(s) 30, 200, 528, 714, 783, 912
BfaI CTAG 1 cut(s) 948
BfmI CTRYAG 1 cut(s) 301
BfuAI ACCTGC 2 cut(s) 47, 337
BisI GCNGC 5 cut(s) 222, 225, 272, 396, 779
BlsI GCNGC 5 cut(s) 223, 226, 273, 397, 780
Bme1390I CCNGG 6 cut(s) 30, 200, 528, 714, 783, 912
Bme18I GGWCC 3 cut(s) 26, 524, 533
BmgT120I GGNCC 6 cut(s) 26, 383, 490, 524, 533, 863
BmiI GGNNCC 4 cut(s) 341, 384, 491, 888
BmrFI CCNGG 6 cut(s) 30, 200, 528, 714, 783, 912
BmrI ACTGGG 1 cut(s) 496
BmsI GCATC 7 cut(s) 94, 237, 302, 382, 618, 816, 831
BmuI ACTGGG 1 cut(s) 496
BpiI GAAGAC 1 cut(s) 741
BpmI CTGGAG 2 cut(s) 134, 804
BpuEI CTTGAG 1 cut(s) 312
BsaJI CCNNGG 4 cut(s) 228, 374, 493, 831
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 9 cut(s) 35, 380, 671, 737, 764, 767, 851, 872, 896
Bse1I ACTGG 4 cut(s) 95, 174, 491, 761
BseBI CCWGG 6 cut(s) 30, 200, 528, 714, 783, 912
BseDI CCNNGG 4 cut(s) 228, 374, 493, 831
BseGI GGATG 6 cut(s) 109, 247, 252, 747, 831, 911
BseLI CCNNNNNNNGG 9 cut(s) 35, 380, 671, 737, 764, 767, 851, 872, 896
BseMII CTCAG 2 cut(s) 518, 650
BseNI ACTGG 4 cut(s) 95, 174, 491, 761
BseRI GAGGAG 2 cut(s) 48, 783
BseXI GCAGC 4 cut(s) 208, 211, 382, 765
BseYI CCCAGC 2 cut(s) 398, 938
BsgI GTGCAG 2 cut(s) 75, 345
BshFI GGCC 7 cut(s) 233, 274, 385, 492, 865, 883, 910
BsiHKAI GWGCWC 2 cut(s) 679, 721
BsiSI CCGG 1 cut(s) 884
BslI CCNNNNNNNGG 9 cut(s) 35, 380, 671, 737, 764, 767, 851, 872, 896
BsnI GGCC 7 cut(s) 233, 274, 385, 492, 865, 883, 910
Bsp1286I GDGCHC 2 cut(s) 679, 721
Bsp143I GATC 3 cut(s) 661, 886, 919
Bsp19I CCATGG 2 cut(s) 228, 831
BspACI CCGC 2 cut(s) 119, 271
BspANI GGCC 7 cut(s) 233, 274, 385, 492, 865, 883, 910
BspCNI CTCAG 2 cut(s) 517, 649
BspHI TCATGA 1 cut(s) 997
BspLI GGNNCC 4 cut(s) 341, 384, 491, 888
BspMI ACCTGC 2 cut(s) 47, 337
BspPI GGATC 4 cut(s) 656, 881, 894, 927
BsrI ACTGG 4 cut(s) 95, 174, 491, 761
BssECI CCNNGG 4 cut(s) 228, 374, 493, 831
BssMI GATC 3 cut(s) 661, 886, 919
BssT1I CCWWGG 3 cut(s) 228, 374, 831
Bst2UI CCWGG 6 cut(s) 30, 200, 528, 714, 783, 912
Bst4CI ACNGT 2 cut(s) 8, 23
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 2 cut(s) 504, 636
BstDSI CCRYGG 2 cut(s) 228, 831
BstEII GGTNACC 1 cut(s) 349
BstF5I GGATG 6 cut(s) 109, 247, 252, 747, 831, 911
BstKTI GATC 3 cut(s) 664, 889, 922
BstMBI GATC 3 cut(s) 661, 886, 919
BstMWI GCNNNNNNNGC 3 cut(s) 62, 230, 674
BstNI CCWGG 6 cut(s) 30, 200, 528, 714, 783, 912
BstPI GGTNACC 1 cut(s) 349
BstSCI CCNGG 6 cut(s) 28, 198, 526, 712, 781, 910
BstSFI CTRYAG 1 cut(s) 301
BstV1I GCAGC 4 cut(s) 208, 211, 382, 765
BstV2I GAAGAC 1 cut(s) 741
BstX2I RGATCY 1 cut(s) 886
BstXI CCANNNNNNTGG 1 cut(s) 983
BstYI RGATCY 1 cut(s) 886
BsuRI GGCC 7 cut(s) 233, 274, 385, 492, 865, 883, 910
BtgI CCRYGG 2 cut(s) 228, 831
BtsCI GGATG 6 cut(s) 109, 247, 252, 747, 831, 911
BtsIMutI CAGTG 4 cut(s) 28, 49, 88, 181
BveI ACCTGC 2 cut(s) 47, 337
Cac8I GCNNGC 1 cut(s) 235
CciI TCATGA 1 cut(s) 997
Cfr13I GGNCC 6 cut(s) 26, 383, 490, 524, 533, 863
CviAII CATG 7 cut(s) 229, 251, 276, 797, 832, 923, 998
DdeI CTNAG 2 cut(s) 504, 636
DpnI GATC 3 cut(s) 663, 888, 921
DpnII GATC 3 cut(s) 661, 886, 919
EaeI YGGCCR 2 cut(s) 272, 881
EciI GGCGGA 1 cut(s) 134
Ecl136II GAGCTC 1 cut(s) 719
Eco130I CCWWGG 3 cut(s) 228, 374, 831
Eco24I GRGCYC 1 cut(s) 721
Eco47I GGWCC 3 cut(s) 26, 524, 533
Eco53kI GAGCTC 1 cut(s) 719
Eco91I GGTNACC 1 cut(s) 349
EcoICRI GAGCTC 1 cut(s) 719
EcoO109I RGGNCCY 1 cut(s) 383
EcoO65I GGTNACC 1 cut(s) 349
EcoRII CCWGG 6 cut(s) 28, 198, 526, 712, 781, 910
EcoT14I CCWWGG 3 cut(s) 228, 374, 831
EcoT22I ATGCAT 1 cut(s) 252
EcoT38I GRGCYC 1 cut(s) 721
ErhI CCWWGG 3 cut(s) 228, 374, 831
FaeI CATG 7 cut(s) 232, 254, 279, 800, 835, 926, 1001
FatI CATG 7 cut(s) 228, 250, 275, 796, 831, 922, 997
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 5 cut(s) 222, 225, 272, 396, 779
FokI GGATG 6 cut(s) 116, 254, 259, 754, 838, 918
FriOI GRGCYC 1 cut(s) 721
Fsp4HI GCNGC 5 cut(s) 222, 225, 272, 396, 779
FspBI CTAG 1 cut(s) 948
GluI GCNGC 5 cut(s) 222, 225, 272, 396, 779
GsaI CCCAGC 2 cut(s) 402, 942
GsuI CTGGAG 2 cut(s) 134, 804
HaeIII GGCC 7 cut(s) 233, 274, 385, 492, 865, 883, 910
HapII CCGG 1 cut(s) 884
Hin1II CATG 7 cut(s) 232, 254, 279, 800, 835, 926, 1001
HincII GTYRAC 1 cut(s) 859
HindII GTYRAC 1 cut(s) 859
HinfI GANTC 4 cut(s) 39, 215, 802, 944
HpaII CCGG 1 cut(s) 884
HphI GGTGA 4 cut(s) 288, 926, 968, 998
Hpy166II GTNNAC 3 cut(s) 96, 205, 859
Hpy188I TCNGA 2 cut(s) 537, 973
Hpy188III TCNNGA 1 cut(s) 998
Hpy8I GTNNAC 3 cut(s) 96, 205, 859
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 2 cut(s) 8, 23
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 230, 674
HpyF3I CTNAG 2 cut(s) 504, 636
Hsp92II CATG 7 cut(s) 232, 254, 279, 800, 835, 926, 1001
Kzo9I GATC 3 cut(s) 661, 886, 919
LmnI GCTCC 5 cut(s) 137, 682, 716, 724, 796
Lsp1109I GCAGC 4 cut(s) 208, 211, 382, 765
LweI GCATC 7 cut(s) 94, 237, 302, 382, 618, 816, 831
MaeI CTAG 1 cut(s) 948
MaeIII GTNAC 1 cut(s) 349
MalI GATC 3 cut(s) 663, 888, 921
MboI GATC 3 cut(s) 661, 886, 919
MboII GAAGA 2 cut(s) 699, 741
MflI RGATCY 1 cut(s) 886
MhlI GDGCHC 2 cut(s) 679, 721
MluCI AATT 2 cut(s) 439, 499
MlyI GAGTC 1 cut(s) 953
Mph1103I ATGCAT 1 cut(s) 252
MseI TTAA 2 cut(s) 264, 309
MslI CAYNNNNRTG 3 cut(s) 836, 927, 981
MspI CCGG 1 cut(s) 884
MspR9I CCNGG 6 cut(s) 30, 200, 528, 714, 783, 912
MvaI CCWGG 6 cut(s) 30, 200, 528, 714, 783, 912
MwoI GCNNNNNNNGC 3 cut(s) 62, 230, 674
NcoI CCATGG 2 cut(s) 228, 831
NdeII GATC 3 cut(s) 661, 886, 919
NlaIII CATG 7 cut(s) 232, 254, 279, 800, 835, 926, 1001
NlaIV GGNNCC 4 cut(s) 341, 384, 491, 888
NmeAIII GCCGAG 1 cut(s) 518
NsiI ATGCAT 1 cut(s) 252
PagI TCATGA 1 cut(s) 997
PaqCI CACCTGC 1 cut(s) 47
PfeI GAWTC 3 cut(s) 39, 215, 802
PflMI CCANNNNNTGG 2 cut(s) 671, 764
PfoI TCCNGGA 2 cut(s) 28, 712
PkrI GCNGC 5 cut(s) 223, 226, 273, 397, 780
PleI GAGTC 1 cut(s) 952
PpsI GAGTC 1 cut(s) 952
Psp124BI GAGCTC 1 cut(s) 721
Psp6I CCWGG 6 cut(s) 28, 198, 526, 712, 781, 910
PspEI GGTNACC 1 cut(s) 349
PspFI CCCAGC 2 cut(s) 398, 938
PspGI CCWGG 6 cut(s) 28, 198, 526, 712, 781, 910
PspN4I GGNNCC 4 cut(s) 341, 384, 491, 888
PspPI GGNCC 6 cut(s) 26, 383, 490, 524, 533, 863
PsuI RGATCY 1 cut(s) 886
RseI CAYNNNNRTG 3 cut(s) 836, 927, 981
SacI GAGCTC 1 cut(s) 721
SaqAI TTAA 2 cut(s) 264, 309
SatI GCNGC 5 cut(s) 222, 225, 272, 396, 779
Sau3AI GATC 3 cut(s) 661, 886, 919
Sau96I GGNCC 6 cut(s) 26, 383, 490, 524, 533, 863
SchI GAGTC 1 cut(s) 953
ScrFI CCNGG 6 cut(s) 30, 200, 528, 714, 783, 912
SduI GDGCHC 2 cut(s) 679, 721
SfaNI GCATC 7 cut(s) 94, 237, 302, 382, 618, 816, 831
SfcI CTRYAG 1 cut(s) 301
SinI GGWCC 3 cut(s) 26, 524, 533
SmiMI CAYNNNNRTG 3 cut(s) 836, 927, 981
SmlI CTYRAG 1 cut(s) 327
SmoI CTYRAG 1 cut(s) 327
Sse9I AATT 2 cut(s) 439, 499
SsiI CCGC 2 cut(s) 119, 271
SspMI CTAG 1 cut(s) 948
SstI GAGCTC 1 cut(s) 721
StyD4I CCNGG 6 cut(s) 28, 198, 526, 712, 781, 910
StyI CCWWGG 3 cut(s) 228, 374, 831
TaaI ACNGT 2 cut(s) 8, 23
TasI AATT 2 cut(s) 439, 499
TauI GCSGC 1 cut(s) 274
TfiI GAWTC 3 cut(s) 39, 215, 802
Tru1I TTAA 2 cut(s) 264, 309
Tru9I TTAA 2 cut(s) 264, 309
TscAI CASTG 4 cut(s) 28, 49, 95, 181
TseI GCWGC 4 cut(s) 221, 224, 395, 778
TspDTI ATGAA 2 cut(s) 17, 741
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 4 cut(s) 28, 49, 95, 181
Van91I CCANNNNNTGG 2 cut(s) 671, 764
VpaK11BI GGWCC 3 cut(s) 26, 524, 533
XmiI GTMKAC 1 cut(s) 204
XspI CTAG 1 cut(s) 948
Zsp2I ATGCAT 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.