cleavage and polyadenylation specificity factor subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G55670 AT5G55670 |
| fragaria_vesca | FvH4_3g29340 FvH4_3g29340 FvH4_3g29340 |
| malus_domestica | MD03G1183300.v1.1 MD11G1200300.v1.1 |
| prunus_persica | Prupe.4G242800_v2.0.a1 Prupe.4G242800_v2.0.a1 Prupe.4G242800_v2.0.a1 |
| pyrus_communis | pycom03g13690 pycom11g17270 |
| rosa_chinensis | RchiOBHm_Chr5g0053701 |
| rosa_laevigata | RLG00000034897 |
| rosa_multiflora | Rmu_co8359745.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00026880 |
| rosa_rugosa | Rorug05G0281400 Rorug05G0281500 Rorug05G0281600 Rorug05G0281600 Rorug05G0281700 |
| rosa_samantha | Rh5AG352600 Rh5BG364300 Rh5CG389200 Rh5DG379100 |
| rosa_wichuraiana | Rw5G033310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1197 |
| Acc36I | ACCTGC | 1 cut(s) | 1003 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1340 |
| AccII | CGCG | 1 cut(s) | 234 |
| AccIII | TCCGGA | 1 cut(s) | 223 |
| AciI | CCGC | 9 cut(s) | 218, 234, 261, 267, 515, 518, 684, 937, 2137 |
| AclI | AACGTT | 1 cut(s) | 1906 |
| AclWI | GGATC | 4 cut(s) | 875, 1325, 1559, 1750 |
| AcoI | YGGCCR | 5 cut(s) | 51, 57, 75, 938, 1691 |
| AcsI | RAATTY | 1 cut(s) | 1410 |
| AcvI | CACGTG | 1 cut(s) | 2075 |
| AfaI | GTAC | 4 cut(s) | 277, 1032, 1964, 2003 |
| AflIII | ACRYGT | 1 cut(s) | 2074 |
| AgeI | ACCGGT | 1 cut(s) | 1192 |
| AgsI | TTSAA | 3 cut(s) | 422, 448, 494 |
| AjnI | CCWGG | 3 cut(s) | 864, 1381, 1450 |
| AluBI | AGCT | 5 cut(s) | 638, 778, 1337, 1613, 1640 |
| AluI | AGCT | 5 cut(s) | 638, 778, 1337, 1613, 1640 |
| Alw21I | GWGCWC | 2 cut(s) | 1348, 1390 |
| Alw26I | GTCTC | 3 cut(s) | 1971, 2001, 2125 |
| Alw44I | GTGCAC | 1 cut(s) | 1344 |
| AlwI | GGATC | 4 cut(s) | 875, 1325, 1559, 1750 |
| Ama87I | CYCGRG | 1 cut(s) | 1911 |
| Aor13HI | TCCGGA | 1 cut(s) | 223 |
| AoxI | GGCC | 9 cut(s) | 51, 57, 75, 389, 938, 1054, 1541, 1691, 1897 |
| ApaI | GGGCCC | 2 cut(s) | 393, 1058 |
| ApaLI | GTGCAC | 1 cut(s) | 1344 |
| ApeKI | GCWGC | 9 cut(s) | 460, 511, 584, 587, 590, 593, 890, 1447, 1640 |
| ApoI | RAATTY | 1 cut(s) | 1410 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1303, 1335 |
| AsiGI | ACCGGT | 1 cut(s) | 1192 |
| AsuC2I | CCSGG | 2 cut(s) | 249, 690 |
| AsuHPI | GGTGA | 8 cut(s) | 23, 281, 299, 954, 1601, 1643, 1673, 1871 |
| AvaI | CYCGRG | 1 cut(s) | 1911 |
| AvaII | GGWCC | 5 cut(s) | 100, 686, 803, 1190, 1951 |
| BaeGI | GKGCMC | 3 cut(s) | 393, 1058, 1348 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1014, 1047 |
| BalI | TGGCCA | 1 cut(s) | 1693 |
| BanII | GRGCYC | 2 cut(s) | 393, 1058 |
| BbrPI | CACGTG | 1 cut(s) | 2075 |
| BbsI | GAAGAC | 2 cut(s) | 1410, 1977 |
| Bbv12I | GWGCWC | 2 cut(s) | 1348, 1390 |
| BbvCI | CCTCAGC | 1 cut(s) | 1305 |
| BbvI | GCAGC | 9 cut(s) | 472, 523, 571, 574, 577, 580, 877, 1434, 1627 |
| BccI | CCATC | 6 cut(s) | 1219, 1309, 1532, 1575, 1659, 1850 |
| BceAI | ACGGC | 2 cut(s) | 38, 2150 |
| BciT130I | CCWGG | 3 cut(s) | 866, 1383, 1452 |
| BciVI | GTATCC | 1 cut(s) | 851 |
| BclI | TGATCA | 1 cut(s) | 1990 |
| BcnI | CCSGG | 2 cut(s) | 249, 690 |
| BcoDI | GTCTC | 3 cut(s) | 1971, 2001, 2125 |
| BfaI | CTAG | 4 cut(s) | 341, 1623, 1800, 1866 |
| BfmI | CTRYAG | 3 cut(s) | 765, 894, 1026 |
| BfuAI | ACCTGC | 1 cut(s) | 1003 |
| BfuI | GTATCC | 1 cut(s) | 851 |
| BlpI | GCTNAGC | 1 cut(s) | 507 |
| Bme1390I | CCNGG | 5 cut(s) | 249, 690, 866, 1383, 1452 |
| Bme18I | GGWCC | 5 cut(s) | 100, 686, 803, 1190, 1951 |
| BmeT110I | CYCGRG | 1 cut(s) | 1911 |
| BmrFI | CCNGG | 5 cut(s) | 249, 690, 866, 1383, 1452 |
| BmrI | ACTGGG | 1 cut(s) | 1110 |
| BmsI | GCATC | 9 cut(s) | 443, 760, 903, 968, 1054, 1485, 1509, 1852, 2104 |
| BmuI | ACTGGG | 1 cut(s) | 1110 |
| BpiI | GAAGAC | 2 cut(s) | 1410, 1977 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 32, 64 |
| BpmI | CTGGAG | 3 cut(s) | 300, 800, 1473 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1170, 1305 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 507 |
| BpuEI | CTTGAG | 2 cut(s) | 978, 2067 |
| BpuMI | CCSGG | 2 cut(s) | 249, 690 |
| BsaAI | YACGTR | 1 cut(s) | 2075 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1773, 1920, 1932 |
| BsaI | GGTCTC | 1 cut(s) | 2001 |
| BsaJI | CCNNGG | 1 cut(s) | 54 |
| BsaWI | WCCGGW | 3 cut(s) | 223, 1192, 2017 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 367, 397, 773, 803 |
| Bse118I | RCCGGY | 1 cut(s) | 1192 |
| Bse1I | ACTGG | 7 cut(s) | 283, 806, 1045, 1084, 1105, 1739, 1835 |
| Bse3DI | GCAATG | 1 cut(s) | 1092 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1773, 1920, 1932 |
| BseAI | TCCGGA | 1 cut(s) | 223 |
| BseBI | CCWGG | 3 cut(s) | 866, 1383, 1452 |
| BseDI | CCNNGG | 1 cut(s) | 54 |
| BseGI | GGATG | 8 cut(s) | 10, 918, 1230, 1500, 1586, 1771, 2035, 2119 |
| BseJI | GATNNNNATC | 3 cut(s) | 1773, 1920, 1932 |
| BseMI | GCAATG | 1 cut(s) | 1092 |
| BseMII | CTCAG | 3 cut(s) | 521, 1184, 1319 |
| BseNI | ACTGG | 7 cut(s) | 283, 806, 1045, 1084, 1105, 1739, 1835 |
| BseRI | GAGGAG | 6 cut(s) | 203, 297, 417, 708, 1063, 1695 |
| BseSI | GKGCMC | 3 cut(s) | 393, 1058, 1348 |
| BseX3I | CGGCCG | 1 cut(s) | 51 |
| BseXI | GCAGC | 9 cut(s) | 472, 523, 571, 574, 577, 580, 877, 1434, 1627 |
| BseYI | CCCAGC | 3 cut(s) | 485, 1067, 1613 |
| Bsh1236I | CGCG | 1 cut(s) | 234 |
| Bsh1285I | CGRYCG | 1 cut(s) | 54 |
| BshFI | GGCC | 9 cut(s) | 53, 59, 77, 391, 940, 1056, 1543, 1693, 1899 |
| BshTI | ACCGGT | 1 cut(s) | 1192 |
| BsiEI | CGRYCG | 1 cut(s) | 54 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1348, 1390 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1911 |
| BsiSI | CCGG | 6 cut(s) | 209, 224, 248, 689, 1193, 2018 |
| BslFI | GGGAC | 4 cut(s) | 742, 1745, 1892, 1964 |
| BsmAI | GTCTC | 3 cut(s) | 1971, 2001, 2125 |
| BsmBI | CGTCTC | 1 cut(s) | 2125 |
| BsmFI | GGGAC | 4 cut(s) | 742, 1745, 1892, 1964 |
| BsnI | GGCC | 9 cut(s) | 53, 59, 77, 391, 940, 1056, 1543, 1693, 1899 |
| Bso31I | GGTCTC | 1 cut(s) | 2001 |
| BsoBI | CYCGRG | 1 cut(s) | 1911 |
| Bsp120I | GGGCCC | 2 cut(s) | 389, 1054 |
| Bsp1286I | GDGCHC | 4 cut(s) | 393, 1058, 1348, 1390 |
| Bsp13I | TCCGGA | 1 cut(s) | 223 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 507 |
| BspACI | CCGC | 9 cut(s) | 218, 234, 261, 267, 515, 518, 684, 937, 2137 |
| BspANI | GGCC | 9 cut(s) | 53, 59, 77, 391, 940, 1056, 1543, 1693, 1899 |
| BspCNI | CTCAG | 3 cut(s) | 520, 1183, 1318 |
| BspEI | TCCGGA | 1 cut(s) | 223 |
| BspFNI | CGCG | 1 cut(s) | 234 |
| BspHI | TCATGA | 2 cut(s) | 1672, 1819 |
| BspMAI | CTGCAG | 1 cut(s) | 1030 |
| BspMI | ACCTGC | 1 cut(s) | 1003 |
| BspPI | GGATC | 4 cut(s) | 875, 1325, 1559, 1750 |
| BspQI | GCTCTTC | 1 cut(s) | 1587 |
| BspTNI | GGTCTC | 1 cut(s) | 2001 |
| BsrDI | GCAATG | 1 cut(s) | 1092 |
| BsrFI | RCCGGY | 1 cut(s) | 1192 |
| BsrI | ACTGG | 7 cut(s) | 283, 806, 1045, 1084, 1105, 1739, 1835 |
| BssAI | RCCGGY | 1 cut(s) | 1192 |
| BssECI | CCNNGG | 1 cut(s) | 54 |
| Bst2UI | CCWGG | 3 cut(s) | 866, 1383, 1452 |
| Bst4CI | ACNGT | 6 cut(s) | 35, 68, 1955, 2012, 2066, 2096 |
| Bst6I | CTCTTC | 3 cut(s) | 75, 1587, 2123 |
| BstBAI | YACGTR | 1 cut(s) | 2075 |
| BstC8I | GCNNGC | 3 cut(s) | 432, 636, 901 |
| BstDEI | CTNAG | 3 cut(s) | 507, 1170, 1305 |
| BstDSI | CCRYGG | 1 cut(s) | 54 |
| BstEII | GGTNACC | 1 cut(s) | 1015 |
| BstF5I | GGATG | 8 cut(s) | 10, 918, 1230, 1500, 1586, 1771, 2035, 2119 |
| BstFNI | CGCG | 1 cut(s) | 234 |
| BstMAI | GTCTC | 3 cut(s) | 1971, 2001, 2125 |
| BstMCI | CGRYCG | 1 cut(s) | 54 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 50, 517, 526, 556, 590, 593, 896, 1306, 1343 |
| BstNI | CCWGG | 3 cut(s) | 866, 1383, 1452 |
| BstNSI | RCATGY | 3 cut(s) | 584, 628, 926 |
| BstPI | GGTNACC | 1 cut(s) | 1015 |
| BstSCI | CCNGG | 5 cut(s) | 247, 688, 864, 1381, 1450 |
| BstSFI | CTRYAG | 3 cut(s) | 765, 894, 1026 |
| BstSLI | GKGCMC | 3 cut(s) | 393, 1058, 1348 |
| BstUI | CGCG | 1 cut(s) | 234 |
| BstV1I | GCAGC | 9 cut(s) | 472, 523, 571, 574, 577, 580, 877, 1434, 1627 |
| BstV2I | GAAGAC | 2 cut(s) | 1410, 1977 |
| BstX2I | RGATCY | 1 cut(s) | 1742 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1658 |
| BstYI | RGATCY | 1 cut(s) | 1742 |
| BstZI | CGGCCG | 1 cut(s) | 51 |
| BsuI | GTATCC | 1 cut(s) | 851 |
| BsuRI | GGCC | 9 cut(s) | 53, 59, 77, 391, 940, 1056, 1543, 1693, 1899 |
| BtgI | CCRYGG | 1 cut(s) | 54 |
| BtsCI | GGATG | 8 cut(s) | 10, 918, 1230, 1500, 1586, 1771, 2035, 2119 |
| BtsIMutI | CAGTG | 1 cut(s) | 813 |
| BveI | ACCTGC | 1 cut(s) | 1003 |
| Cac8I | GCNNGC | 3 cut(s) | 432, 636, 901 |
| CciI | TCATGA | 2 cut(s) | 1672, 1819 |
| Cfr10I | RCCGGY | 1 cut(s) | 1192 |
| CpoI | CGGWCCG | 1 cut(s) | 686 |
| Csp6I | GTAC | 4 cut(s) | 276, 1031, 1963, 2002 |
| CspAI | ACCGGT | 1 cut(s) | 1192 |
| CspI | CGGWCCG | 1 cut(s) | 686 |
| CviQI | GTAC | 4 cut(s) | 276, 1031, 1963, 2002 |
| DdeI | CTNAG | 3 cut(s) | 507, 1170, 1305 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1197 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1197 |
| EaeI | YGGCCR | 5 cut(s) | 51, 57, 75, 938, 1691 |
| EagI | CGGCCG | 1 cut(s) | 51 |
| Eam1104I | CTCTTC | 3 cut(s) | 75, 1587, 2123 |
| EarI | CTCTTC | 3 cut(s) | 75, 1587, 2123 |
| EclXI | CGGCCG | 1 cut(s) | 51 |
| Eco24I | GRGCYC | 2 cut(s) | 393, 1058 |
| Eco31I | GGTCTC | 1 cut(s) | 2001 |
| Eco47I | GGWCC | 5 cut(s) | 100, 686, 803, 1190, 1951 |
| Eco52I | CGGCCG | 1 cut(s) | 51 |
| Eco72I | CACGTG | 1 cut(s) | 2075 |
| Eco88I | CYCGRG | 1 cut(s) | 1911 |
| Eco91I | GGTNACC | 1 cut(s) | 1015 |
| EcoO109I | RGGNCCY | 4 cut(s) | 100, 389, 1054, 1055 |
| EcoO65I | GGTNACC | 1 cut(s) | 1015 |
| EcoRII | CCWGG | 3 cut(s) | 864, 1381, 1450 |
| EcoT22I | ATGCAT | 1 cut(s) | 918 |
| EcoT38I | GRGCYC | 2 cut(s) | 393, 1058 |
| Esp3I | CGTCTC | 1 cut(s) | 2125 |
| FaqI | GGGAC | 4 cut(s) | 742, 1745, 1892, 1964 |
| FbaI | TGATCA | 1 cut(s) | 1990 |
| FokI | GGATG | 8 cut(s) | 17, 925, 1237, 1507, 1593, 1778, 2042, 2126 |
| FriOI | GRGCYC | 2 cut(s) | 393, 1058 |
| FspBI | CTAG | 4 cut(s) | 341, 1623, 1800, 1866 |
| GsaI | CCCAGC | 3 cut(s) | 489, 1071, 1617 |
| GsuI | CTGGAG | 3 cut(s) | 300, 800, 1473 |
| HaeIII | GGCC | 9 cut(s) | 53, 59, 77, 391, 940, 1056, 1543, 1693, 1899 |
| HapII | CCGG | 6 cut(s) | 209, 224, 248, 689, 1193, 2018 |
| HinfI | GANTC | 5 cut(s) | 203, 337, 1471, 1619, 2059 |
| HpaII | CCGG | 6 cut(s) | 209, 224, 248, 689, 1193, 2018 |
| HphI | GGTGA | 8 cut(s) | 23, 281, 299, 954, 1601, 1643, 1673, 1871 |
| Hpy166II | GTNNAC | 3 cut(s) | 762, 1346, 2015 |
| Hpy188I | TCNGA | 6 cut(s) | 1564, 1648, 1726, 1750, 1837, 2149 |
| Hpy8I | GTNNAC | 3 cut(s) | 762, 1346, 2015 |
| Hpy99I | CGWCG | 3 cut(s) | 65, 68, 2100 |
| HpyAV | CCTTC | 5 cut(s) | 805, 902, 1749, 1836, 2040 |
| HpyCH4III | ACNGT | 6 cut(s) | 35, 68, 1955, 2012, 2066, 2096 |
| HpyCH4IV | ACGT | 3 cut(s) | 1906, 2074, 2144 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 50, 517, 526, 556, 590, 593, 896, 1306, 1343 |
| HpyF3I | CTNAG | 3 cut(s) | 507, 1170, 1305 |
| HpySE526I | ACGT | 3 cut(s) | 1906, 2074, 2144 |
| Kpn2I | TCCGGA | 1 cut(s) | 223 |
| Ksp22I | TGATCA | 1 cut(s) | 1990 |
| LguI | GCTCTTC | 1 cut(s) | 1587 |
| LmnI | GCTCC | 3 cut(s) | 17, 226, 1393 |
| Lsp1109I | GCAGC | 9 cut(s) | 472, 523, 571, 574, 577, 580, 877, 1434, 1627 |
| LweI | GCATC | 9 cut(s) | 443, 760, 903, 968, 1054, 1485, 1509, 1852, 2104 |
| MaeI | CTAG | 4 cut(s) | 341, 1623, 1800, 1866 |
| MaeII | ACGT | 3 cut(s) | 1906, 2074, 2144 |
| MaeIII | GTNAC | 6 cut(s) | 11, 35, 287, 1015, 1088, 1136 |
| MboII | GAAGA | 7 cut(s) | 92, 1410, 1604, 1646, 1737, 1982, 2140 |
| MfeI | CAATTG | 1 cut(s) | 524 |
| MflI | RGATCY | 1 cut(s) | 1742 |
| MhlI | GDGCHC | 4 cut(s) | 393, 1058, 1348, 1390 |
| MlsI | TGGCCA | 1 cut(s) | 1693 |
| MluCI | AATT | 8 cut(s) | 161, 422, 443, 524, 575, 1108, 1150, 1410 |
| MluNI | TGGCCA | 1 cut(s) | 1693 |
| MlyI | GAGTC | 3 cut(s) | 212, 1628, 2053 |
| MmeI | TCCRAC | 1 cut(s) | 628 |
| Mox20I | TGGCCA | 1 cut(s) | 1693 |
| Mph1103I | ATGCAT | 1 cut(s) | 918 |
| MroI | TCCGGA | 1 cut(s) | 223 |
| MscI | TGGCCA | 1 cut(s) | 1693 |
| MseI | TTAA | 3 cut(s) | 663, 930, 975 |
| MslI | CAYNNNNRTG | 5 cut(s) | 921, 1602, 1656, 1824, 2028 |
| Msp20I | TGGCCA | 1 cut(s) | 1693 |
| MspI | CCGG | 6 cut(s) | 209, 224, 248, 689, 1193, 2018 |
| MspR9I | CCNGG | 5 cut(s) | 249, 690, 866, 1383, 1452 |
| MunI | CAATTG | 1 cut(s) | 524 |
| MvaI | CCWGG | 3 cut(s) | 866, 1383, 1452 |
| MvnI | CGCG | 1 cut(s) | 234 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 50, 517, 526, 556, 590, 593, 896, 1306, 1343 |
| NciI | CCSGG | 2 cut(s) | 249, 690 |
| NmeAIII | GCCGAG | 2 cut(s) | 29, 1925 |
| NmuCI | GTSAC | 2 cut(s) | 11, 287 |
| NsiI | ATGCAT | 1 cut(s) | 918 |
| NspI | RCATGY | 3 cut(s) | 584, 628, 926 |
| PaeR7I | CTCGAG | 1 cut(s) | 1911 |
| PagI | TCATGA | 2 cut(s) | 1672, 1819 |
| PciSI | GCTCTTC | 1 cut(s) | 1587 |
| PfeI | GAWTC | 2 cut(s) | 337, 1471 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1340 |
| PfoI | TCCNGGA | 1 cut(s) | 688 |
| PinAI | ACCGGT | 1 cut(s) | 1192 |
| PleI | GAGTC | 3 cut(s) | 211, 1627, 2053 |
| PmaCI | CACGTG | 1 cut(s) | 2075 |
| PmlI | CACGTG | 1 cut(s) | 2075 |
| PpsI | GAGTC | 3 cut(s) | 211, 1627, 2053 |
| Ppu21I | YACGTR | 1 cut(s) | 2075 |
| PpuMI | RGGWCCY | 1 cut(s) | 100 |
| Psp1406I | AACGTT | 1 cut(s) | 1906 |
| Psp5II | RGGWCCY | 1 cut(s) | 100 |
| Psp6I | CCWGG | 3 cut(s) | 864, 1381, 1450 |
| PspCI | CACGTG | 1 cut(s) | 2075 |
| PspEI | GGTNACC | 1 cut(s) | 1015 |
| PspFI | CCCAGC | 3 cut(s) | 485, 1067, 1613 |
| PspGI | CCWGG | 3 cut(s) | 864, 1381, 1450 |
| PspOMI | GGGCCC | 2 cut(s) | 389, 1054 |
| PspPPI | RGGWCCY | 1 cut(s) | 100 |
| PstI | CTGCAG | 1 cut(s) | 1030 |
| PsuI | RGATCY | 1 cut(s) | 1742 |
| RsaI | GTAC | 4 cut(s) | 277, 1032, 1964, 2003 |
| RsaNI | GTAC | 4 cut(s) | 276, 1031, 1963, 2002 |
| RseI | CAYNNNNRTG | 5 cut(s) | 921, 1602, 1656, 1824, 2028 |
| Rsr2I | CGGWCCG | 1 cut(s) | 686 |
| RsrII | CGGWCCG | 1 cut(s) | 686 |
| SapI | GCTCTTC | 1 cut(s) | 1587 |
| SaqAI | TTAA | 3 cut(s) | 663, 930, 975 |
| SchI | GAGTC | 3 cut(s) | 212, 1628, 2053 |
| ScrFI | CCNGG | 5 cut(s) | 249, 690, 866, 1383, 1452 |
| SduI | GDGCHC | 4 cut(s) | 393, 1058, 1348, 1390 |
| SfaNI | GCATC | 9 cut(s) | 443, 760, 903, 968, 1054, 1485, 1509, 1852, 2104 |
| SfcI | CTRYAG | 3 cut(s) | 765, 894, 1026 |
| Sfr274I | CTCGAG | 1 cut(s) | 1911 |
| SinI | GGWCC | 5 cut(s) | 100, 686, 803, 1190, 1951 |
| SlaI | CTCGAG | 1 cut(s) | 1911 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 921, 1602, 1656, 1824, 2028 |
| SmlI | CTYRAG | 3 cut(s) | 993, 1911, 2082 |
| SmoI | CTYRAG | 3 cut(s) | 993, 1911, 2082 |
| Sse9I | AATT | 8 cut(s) | 161, 422, 443, 524, 575, 1108, 1150, 1410 |
| SsiI | CCGC | 9 cut(s) | 218, 234, 261, 267, 515, 518, 684, 937, 2137 |
| SspMI | CTAG | 4 cut(s) | 341, 1623, 1800, 1866 |
| StyD4I | CCNGG | 5 cut(s) | 247, 688, 864, 1381, 1450 |
| TaaI | ACNGT | 6 cut(s) | 35, 68, 1955, 2012, 2066, 2096 |
| TaiI | ACGT | 3 cut(s) | 1909, 2077, 2147 |
| TaqI | TCGA | 3 cut(s) | 1870, 1912, 2054 |
| TaqII | GACCGA | 2 cut(s) | 1989, 2088 |
| TasI | AATT | 8 cut(s) | 161, 422, 443, 524, 575, 1108, 1150, 1410 |
| TatI | WGTACW | 1 cut(s) | 2001 |
| TauI | GCSGC | 5 cut(s) | 221, 517, 520, 940, 2140 |
| TfiI | GAWTC | 2 cut(s) | 337, 1471 |
| Tru1I | TTAA | 3 cut(s) | 663, 930, 975 |
| Tru9I | TTAA | 3 cut(s) | 663, 930, 975 |
| TscAI | CASTG | 1 cut(s) | 813 |
| TseFI | GTSAC | 2 cut(s) | 11, 287 |
| TseI | GCWGC | 9 cut(s) | 460, 511, 584, 587, 590, 593, 890, 1447, 1640 |
| Tsp45I | GTSAC | 2 cut(s) | 11, 287 |
| TspDTI | ATGAA | 5 cut(s) | 21, 192, 1410, 1517, 2046 |
| TspGWI | ACGGA | 2 cut(s) | 30, 306 |
| TspRI | CASTG | 1 cut(s) | 813 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1340 |
| VneI | GTGCAC | 1 cut(s) | 1344 |
| VpaK11BI | GGWCC | 5 cut(s) | 100, 686, 803, 1190, 1951 |
| XapI | RAATTY | 1 cut(s) | 1410 |
| XceI | RCATGY | 3 cut(s) | 584, 628, 926 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1507 |
| XhoI | CTCGAG | 1 cut(s) | 1911 |
| XspI | CTAG | 4 cut(s) | 341, 1623, 1800, 1866 |
| Zsp2I | ATGCAT | 1 cut(s) | 918 |