cleavage and polyadenylation specificity factor subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G55670 AT5G55670 |
| fragaria_vesca | FvH4_3g29340 FvH4_3g29340 FvH4_3g29340 |
| malus_domestica | MD03G1183300.v1.1 MD11G1200300.v1.1 |
| prunus_persica | Prupe.4G242800_v2.0.a1 Prupe.4G242800_v2.0.a1 Prupe.4G242800_v2.0.a1 |
| pyrus_communis | pycom03g13690 pycom11g17270 |
| rosa_chinensis | RchiOBHm_Chr5g0053701 |
| rosa_laevigata | RLG00000034897 |
| rosa_multiflora | Rmu_co8359745.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00026880 |
| rosa_rugosa | Rorug05G0281400 Rorug05G0281500 Rorug05G0281600 Rorug05G0281600 Rorug05G0281700 |
| rosa_samantha | Rh5AG352600 Rh5BG364300 Rh5CG389200 Rh5DG379100 |
| rosa_wichuraiana | Rw5G033310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 638 |
| AccI | GTMKAC | 1 cut(s) | 675 |
| AccII | CGCG | 1 cut(s) | 277 |
| AcsI | RAATTY | 3 cut(s) | 499, 817, 921 |
| AcuI | CTGAAG | 1 cut(s) | 716 |
| AfaI | GTAC | 2 cut(s) | 621, 755 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 90 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 152, 184 |
| AluBI | AGCT | 5 cut(s) | 19, 259, 490, 601, 773 |
| AluI | AGCT | 5 cut(s) | 19, 259, 490, 601, 773 |
| Alw21I | GWGCWC | 1 cut(s) | 52 |
| Alw26I | GTCTC | 1 cut(s) | 941 |
| Alw44I | GTGCAC | 1 cut(s) | 48 |
| Ama87I | CYCGRG | 1 cut(s) | 89 |
| ApaLI | GTGCAC | 1 cut(s) | 48 |
| ApoI | RAATTY | 3 cut(s) | 499, 817, 921 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 536 |
| AspA2I | CCTAGG | 1 cut(s) | 449 |
| AspLEI | GCGC | 1 cut(s) | 363 |
| AspS9I | GGNCC | 2 cut(s) | 111, 223 |
| AsuHPI | GGTGA | 1 cut(s) | 743 |
| AsuII | TTCGAA | 1 cut(s) | 171 |
| AvaI | CYCGRG | 1 cut(s) | 89 |
| AvaII | GGWCC | 2 cut(s) | 111, 223 |
| AvrII | CCTAGG | 1 cut(s) | 449 |
| BaeGI | GKGCMC | 1 cut(s) | 52 |
| BauI | CACGAG | 1 cut(s) | 797 |
| BbsI | GAAGAC | 1 cut(s) | 180 |
| Bbv12I | GWGCWC | 1 cut(s) | 52 |
| BccI | CCATC | 1 cut(s) | 722 |
| BclI | TGATCA | 1 cut(s) | 745 |
| BcoDI | GTCTC | 1 cut(s) | 941 |
| BfaI | CTAG | 3 cut(s) | 164, 450, 845 |
| BfmI | CTRYAG | 1 cut(s) | 187 |
| BfoI | RGCGCY | 1 cut(s) | 364 |
| BlnI | CCTAGG | 1 cut(s) | 449 |
| BmcAI | AGTACT | 1 cut(s) | 621 |
| Bme18I | GGWCC | 2 cut(s) | 111, 223 |
| BmeT110I | CYCGRG | 1 cut(s) | 89 |
| BmgT120I | GGNCC | 2 cut(s) | 111, 223 |
| BmiI | GGNNCC | 3 cut(s) | 156, 224, 455 |
| BmsI | GCATC | 1 cut(s) | 543 |
| BpiI | GAAGAC | 1 cut(s) | 180 |
| BpmI | CTGGAG | 1 cut(s) | 497 |
| Bpu14I | TTCGAA | 1 cut(s) | 171 |
| BpuEI | CTTGAG | 1 cut(s) | 533 |
| BsaBI | GATNNNNATC | 1 cut(s) | 342 |
| BsaJI | CCNNGG | 3 cut(s) | 88, 449, 527 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 90 |
| Bse1I | ACTGG | 2 cut(s) | 480, 617 |
| Bse8I | GATNNNNATC | 1 cut(s) | 342 |
| BseDI | CCNNGG | 3 cut(s) | 88, 449, 527 |
| BseGI | GGATG | 2 cut(s) | 249, 574 |
| BseJI | GATNNNNATC | 1 cut(s) | 342 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 90 |
| BseNI | ACTGG | 2 cut(s) | 480, 617 |
| BseSI | GKGCMC | 1 cut(s) | 52 |
| BsgI | GTGCAG | 1 cut(s) | 669 |
| Bsh1236I | CGCG | 1 cut(s) | 277 |
| BsiHKAI | GWGCWC | 1 cut(s) | 52 |
| BsiHKCI | CYCGRG | 1 cut(s) | 89 |
| BslFI | GGGAC | 1 cut(s) | 106 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 90 |
| BsmAI | GTCTC | 1 cut(s) | 941 |
| BsmFI | GGGAC | 1 cut(s) | 106 |
| BsmI | GAATGC | 2 cut(s) | 714, 838 |
| BsoBI | CYCGRG | 1 cut(s) | 89 |
| Bsp119I | TTCGAA | 1 cut(s) | 171 |
| Bsp1286I | GDGCHC | 1 cut(s) | 52 |
| Bsp143I | GATC | 2 cut(s) | 745, 895 |
| BspFNI | CGCG | 1 cut(s) | 277 |
| BspHI | TCATGA | 1 cut(s) | 748 |
| BspLI | GGNNCC | 3 cut(s) | 156, 224, 455 |
| BspT104I | TTCGAA | 1 cut(s) | 171 |
| BsrI | ACTGG | 2 cut(s) | 480, 617 |
| BssECI | CCNNGG | 3 cut(s) | 88, 449, 527 |
| BssMI | GATC | 2 cut(s) | 745, 895 |
| BssSI | CACGAG | 1 cut(s) | 797 |
| BssT1I | CCWWGG | 2 cut(s) | 449, 527 |
| Bst2BI | CACGAG | 1 cut(s) | 797 |
| Bst4CI | ACNGT | 3 cut(s) | 101, 740, 876 |
| Bst6I | CTCTTC | 1 cut(s) | 174 |
| BstBI | TTCGAA | 1 cut(s) | 171 |
| BstDEI | CTNAG | 1 cut(s) | 704 |
| BstEII | GGTNACC | 1 cut(s) | 444 |
| BstF5I | GGATG | 2 cut(s) | 249, 574 |
| BstFNI | CGCG | 1 cut(s) | 277 |
| BstH2I | RGCGCY | 1 cut(s) | 364 |
| BstHHI | GCGC | 1 cut(s) | 363 |
| BstKTI | GATC | 2 cut(s) | 748, 898 |
| BstMAI | GTCTC | 1 cut(s) | 941 |
| BstMBI | GATC | 2 cut(s) | 745, 895 |
| BstPI | GGTNACC | 1 cut(s) | 444 |
| BstSFI | CTRYAG | 1 cut(s) | 187 |
| BstSLI | GKGCMC | 1 cut(s) | 52 |
| BstUI | CGCG | 1 cut(s) | 277 |
| BstV2I | GAAGAC | 1 cut(s) | 180 |
| BtsCI | GGATG | 2 cut(s) | 249, 574 |
| BtsI | GCAGTG | 1 cut(s) | 372 |
| BtsIMutI | CAGTG | 3 cut(s) | 372, 473, 881 |
| CciI | TCATGA | 1 cut(s) | 748 |
| CfoI | GCGC | 1 cut(s) | 363 |
| Cfr13I | GGNCC | 2 cut(s) | 111, 223 |
| Csp6I | GTAC | 2 cut(s) | 620, 754 |
| CviAII | CATG | 1 cut(s) | 749 |
| CviQI | GTAC | 2 cut(s) | 620, 754 |
| DdeI | CTNAG | 1 cut(s) | 704 |
| DpnI | GATC | 2 cut(s) | 747, 897 |
| DpnII | GATC | 2 cut(s) | 745, 895 |
| Eam1104I | CTCTTC | 1 cut(s) | 174 |
| EarI | CTCTTC | 1 cut(s) | 174 |
| Eco130I | CCWWGG | 2 cut(s) | 449, 527 |
| Eco32I | GATATC | 2 cut(s) | 283, 344 |
| Eco47I | GGWCC | 2 cut(s) | 111, 223 |
| Eco57I | CTGAAG | 1 cut(s) | 716 |
| Eco88I | CYCGRG | 1 cut(s) | 89 |
| Eco91I | GGTNACC | 1 cut(s) | 444 |
| EcoO109I | RGGNCCY | 1 cut(s) | 223 |
| EcoO65I | GGTNACC | 1 cut(s) | 444 |
| EcoRV | GATATC | 2 cut(s) | 283, 344 |
| EcoT14I | CCWWGG | 2 cut(s) | 449, 527 |
| EcoT22I | ATGCAT | 1 cut(s) | 714 |
| ErhI | CCWWGG | 2 cut(s) | 449, 527 |
| FaeI | CATG | 1 cut(s) | 752 |
| FaiI | YATR | 6 cut(s) | 77, 304, 524, 638, 750, 963 |
| FaqI | GGGAC | 1 cut(s) | 106 |
| FatI | CATG | 1 cut(s) | 748 |
| FbaI | TGATCA | 1 cut(s) | 745 |
| FblI | GTMKAC | 1 cut(s) | 675 |
| FokI | GGATG | 2 cut(s) | 236, 561 |
| FspBI | CTAG | 3 cut(s) | 164, 450, 845 |
| GlaI | GCGC | 1 cut(s) | 362 |
| GsuI | CTGGAG | 1 cut(s) | 497 |
| HaeII | RGCGCY | 1 cut(s) | 364 |
| HhaI | GCGC | 1 cut(s) | 363 |
| Hin1II | CATG | 1 cut(s) | 752 |
| Hin6I | GCGC | 1 cut(s) | 361 |
| HinP1I | GCGC | 1 cut(s) | 361 |
| HincII | GTYRAC | 1 cut(s) | 813 |
| HindII | GTYRAC | 1 cut(s) | 813 |
| HindIII | AAGCTT | 3 cut(s) | 17, 488, 599 |
| HinfI | GANTC | 3 cut(s) | 5, 118, 299 |
| HphI | GGTGA | 1 cut(s) | 743 |
| Hpy166II | GTNNAC | 3 cut(s) | 50, 676, 813 |
| Hpy188I | TCNGA | 2 cut(s) | 869, 985 |
| Hpy188III | TCNNGA | 8 cut(s) | 91, 164, 425, 463, 550, 749, 782, 799 |
| Hpy8I | GTNNAC | 3 cut(s) | 50, 676, 813 |
| HpyAV | CCTTC | 3 cut(s) | 94, 324, 796 |
| HpyCH4III | ACNGT | 3 cut(s) | 101, 740, 876 |
| HpyCH4V | TGCA | 7 cut(s) | 50, 323, 686, 712, 836, 881, 902 |
| HpyF3I | CTNAG | 1 cut(s) | 704 |
| Hsp92II | CATG | 1 cut(s) | 752 |
| HspAI | GCGC | 1 cut(s) | 361 |
| Ksp22I | TGATCA | 1 cut(s) | 745 |
| Kzo9I | GATC | 2 cut(s) | 745, 895 |
| LmnI | GCTCC | 1 cut(s) | 453 |
| LpnPI | CCDG | 7 cut(s) | 69, 349, 419, 438, 461, 630, 906 |
| LweI | GCATC | 1 cut(s) | 543 |
| MaeI | CTAG | 3 cut(s) | 164, 450, 845 |
| MaeIII | GTNAC | 3 cut(s) | 71, 444, 928 |
| MalI | GATC | 2 cut(s) | 747, 897 |
| MboI | GATC | 2 cut(s) | 745, 895 |
| MboII | GAAGA | 8 cut(s) | 47, 185, 191, 638, 674, 709, 905, 958 |
| MhlI | GDGCHC | 1 cut(s) | 52 |
| MluCI | AATT | 6 cut(s) | 217, 499, 817, 903, 921, 951 |
| MnlI | CCTC | 7 cut(s) | 98, 102, 123, 472, 557, 588, 951 |
| Mph1103I | ATGCAT | 1 cut(s) | 714 |
| MroXI | GAANNNNTTC | 1 cut(s) | 536 |
| MseI | TTAA | 2 cut(s) | 216, 768 |
| Mva1269I | GAATGC | 2 cut(s) | 714, 838 |
| MvnI | CGCG | 1 cut(s) | 277 |
| NdeII | GATC | 2 cut(s) | 745, 895 |
| NlaIII | CATG | 1 cut(s) | 752 |
| NlaIV | GGNNCC | 3 cut(s) | 156, 224, 455 |
| NmuCI | GTSAC | 1 cut(s) | 71 |
| NsiI | ATGCAT | 1 cut(s) | 714 |
| NspV | TTCGAA | 1 cut(s) | 171 |
| PagI | TCATGA | 1 cut(s) | 748 |
| PctI | GAATGC | 2 cut(s) | 714, 838 |
| PdmI | GAANNNNTTC | 1 cut(s) | 536 |
| PfeI | GAWTC | 3 cut(s) | 5, 118, 299 |
| PpuMI | RGGWCCY | 1 cut(s) | 223 |
| PsiI | TTATAA | 1 cut(s) | 638 |
| Psp5II | RGGWCCY | 1 cut(s) | 223 |
| PspEI | GGTNACC | 1 cut(s) | 444 |
| PspN4I | GGNNCC | 3 cut(s) | 156, 224, 455 |
| PspPI | GGNCC | 2 cut(s) | 111, 223 |
| PspPPI | RGGWCCY | 1 cut(s) | 223 |
| RsaI | GTAC | 2 cut(s) | 621, 755 |
| RsaNI | GTAC | 2 cut(s) | 620, 754 |
| SaqAI | TTAA | 2 cut(s) | 216, 768 |
| Sau3AI | GATC | 2 cut(s) | 745, 895 |
| Sau96I | GGNCC | 2 cut(s) | 111, 223 |
| ScaI | AGTACT | 1 cut(s) | 621 |
| SduI | GDGCHC | 1 cut(s) | 52 |
| SfaNI | GCATC | 1 cut(s) | 543 |
| SfcI | CTRYAG | 1 cut(s) | 187 |
| SfuI | TTCGAA | 1 cut(s) | 171 |
| SinI | GGWCC | 2 cut(s) | 111, 223 |
| SmlI | CTYRAG | 1 cut(s) | 548 |
| SmoI | CTYRAG | 1 cut(s) | 548 |
| Sse9I | AATT | 6 cut(s) | 217, 499, 817, 903, 921, 951 |
| SspI | AATATT | 1 cut(s) | 412 |
| SspMI | CTAG | 3 cut(s) | 164, 450, 845 |
| StyI | CCWWGG | 2 cut(s) | 449, 527 |
| TaaI | ACNGT | 3 cut(s) | 101, 740, 876 |
| TaqI | TCGA | 3 cut(s) | 171, 285, 462 |
| TaqII | GACCGA | 1 cut(s) | 500 |
| TasI | AATT | 6 cut(s) | 217, 499, 817, 903, 921, 951 |
| TatI | WGTACW | 2 cut(s) | 619, 753 |
| TfiI | GAWTC | 3 cut(s) | 5, 118, 299 |
| Tru1I | TTAA | 2 cut(s) | 216, 768 |
| Tru9I | TTAA | 2 cut(s) | 216, 768 |
| TscAI | CASTG | 3 cut(s) | 379, 480, 881 |
| TseFI | GTSAC | 1 cut(s) | 71 |
| Tsp45I | GTSAC | 1 cut(s) | 71 |
| TspDTI | ATGAA | 3 cut(s) | 75, 188, 560 |
| TspGWI | ACGGA | 1 cut(s) | 444 |
| TspRI | CASTG | 3 cut(s) | 379, 480, 881 |
| VneI | GTGCAC | 1 cut(s) | 48 |
| VpaK11BI | GGWCC | 2 cut(s) | 111, 223 |
| XapI | RAATTY | 3 cut(s) | 499, 817, 921 |
| XbaI | TCTAGA | 1 cut(s) | 163 |
| XmaJI | CCTAGG | 1 cut(s) | 449 |
| XmiI | GTMKAC | 1 cut(s) | 675 |
| XmnI | GAANNNNTTC | 1 cut(s) | 536 |
| XspI | CTAG | 3 cut(s) | 164, 450, 845 |
| ZrmI | AGTACT | 1 cut(s) | 621 |
| Zsp2I | ATGCAT | 1 cut(s) | 714 |