Rh5AG352600

cleavage and polyadenylation specificity factor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0006731
Physical Location & Seq
Forward (+)
58336116 .. 58341907
5792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG352600.1

Sequence Viewer

Length: 2106 bp
ATGGACGACGGCGACGGAGCCGATCATTTCCACCGTAACGAGGCCATCTCGGCCGTCGCCGACGACGGCTTTTTAGCCGAGGAGGACGACGACTACGAGGACCTCTACAACGATGTGAATGTCGGCGAGGGGTTTTATCAGTCTATGAGAAAGAGCGAGGATTTAGGGTTTAAAAATGAGGCCGTGGAGGAGAAGAAGGTTGAGTTGCCGGAGGTTTCGGCTCCGCAACATCAAGGCGCTCCGATACCGAGCTCCGGGGGCGGTGAGGGTAGGGGTTCTGGGTTCGGTAATCAGAATCTAGGGTTTAGAGGGAACGAGATGGGTGCGAAAGGGAGTGGTGGGTTGGGAGGGCCTATTGGCAGTGGAGGTGGGATGAGGATTGAATTAGGGCAAGCGTCGAGTAAATTGAATGAGTTTGAGCACCAAAGTGGGAATAATGTTGGTCTTGGGGTTCAAGGGATTGGTGCTCAGCAGCAGCATCAGCAGCAATTACAACCGCAACATCAACTGCAACCACAACCGCAATCGCAACTGCAACCTCCACAGCAACATCAACAGTTACACGGTGGTGCTGTTGCTGTTGGGAATGTGGGGAATGAGGGTTTCTTGAGGCAACCTGGTGGTGTCGGAGGGGGGAATGTGAACGGTGTTGGTGGGAACAGTGGTCCAGGAGGAGGATTCAGTGGAGGTGGTGCAGGTGGGGCAACATTGTATGTGGGGGATTTGCACTGGTGGACAACGGATGCAGAGCTGGAGGCGGAGTTGTGCAAGTATGGAGCTGTGAAGGAAGTGAAGTTTTTCGATGAGAAAGCCAGTGGGAAGTCAAAAGGATATTGCCAGGTAGACTTCTATGATTCGGCTGCTGCCATGGCCTGCAAGGATGGGATGCATGGGCATTTGTTTAATGGGCGGCCATGTGTTGTTGCTTTTGCATCACCCTATAGTGTTAAGAGAATGGGGGAGGCTCAAGTGAATAGGAACCAGCAGGTAACCCAAACTGCACAAGCTCAACCAAGGAGGGGGCCTAATGATGCTGCTGGGAATAAAGTTGGTGGGAGTGCCATAACAACAGGTGGGAATTATCAAGGTGGGGATAATAACAGCAGAGGTTATGGGAGAGCTAACTGGGGCCGAGGTAATTCTCAGGGAATGGGAGGTAGAGGTCCAGGTGGTCCGATGAGGAATAGGGGTGGAATGAGTGGCAGAGGTATAATGGGGAATGGTGGAAATGGGTTTGGGCAAGGTATGGGGGCAACCCCTCCTTTGATGCACCCTCAGTCAATGATGGGTCAGGGCTTTGATCCAGCTTTTGGCGCTCCAATGGGAAGAATGGGGAGTTATGGAGGCTTTCCAGGAGCTCCACAGCCTCCTTTCTCTGGGATGATGTCTTCATTCCCACCGGTTGGGGGTGTTGGGCTGCCTGGAGTAGCTCCTCATGTGAATCCTGCATTTTTTGGACGAGGGATGCCCATGGGAATGATGCCGACATCAGGTGTTGACGGGCCTAATATGGGAATGTGGCCGGATCCTAATATGGGGGGTGGATGGCCTGGTGAGGATCATGGTGGTGGCAGAGCTGGGGAGTCTAGTTATGGTGAGGAAGCTGGTTCTGACCATCAATATGGTGAGGGTAGTCATGATAGAGGTGGGTGGCAGAATGCTATGAAGGAGAAAGATAGAGGTTCAGAGAGGGACTGGTCTGGATCTTCTGATAGGAGGTATCGGGAAGATAGGGATCAAGGGTTTGACAGAGACATGCCAAGAGAGAAAGAAGTGGGTCATGACCGTGAATGGTCTGAAAGAAGGCATCGGAATGATGTAGATGTTAATCGAGAGCGGGACAGAGAGCGTGATAGGGGCCGAGAACGTTCTCGAGATCGCGATCGTGACAGGTACAGGGAAGATAGAGAAAAATATGCTGATCATCATAAATACAGAGATCGTGAAACGGTGCACCAGGATGAAATAGAAAGGGGGAGGTCTACAAGGACCCATAGTAAGGCACGCTTATCTGAAGATGATGACCGTCGTTCAAGATCTAGGGACCGCCGTTCAAGATCTAGGGATGTTGATTATGGGAAGAGGCGGCGGCTTACTTCTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000381 GO:0000785 GO:0000790 GO:0000791 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005694 GO:0005719 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006508 GO:0006509 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0031982 GO:0032774 GO:0032991 GO:0033119 GO:0033120 GO:0033619 GO:0034097 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043230 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044530 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048024 GO:0048025 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051259 GO:0051260 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070062 GO:0070555 GO:0070887 GO:0071013 GO:0071310 GO:0071345 GO:0071347 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903311 GO:1903312 GO:1903313 GO:1903506 GO:1903508 GO:1903561 GO:1990837 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
RRM_1

Protein Analysis

701

Amino Acids

75.51

Weight (kDa)

6.15

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 237 - 306 2.8e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 686
Acc36I ACCTGC 2 cut(s) 686, 976
AccB7I CCANNNNNTGG 2 cut(s) 1310, 1403
AccBSI CCGCTC 1 cut(s) 1837
AccI GTMKAC 2 cut(s) 843, 1982
AccII CGCG 1 cut(s) 1881
AclI AACGTT 1 cut(s) 1867
AclWI GGATC 6 cut(s) 1295, 1520, 1533, 1566, 1711, 1743
AcoI YGGCCR 3 cut(s) 51, 911, 1520
AcuI CTGAAG 1 cut(s) 2034
AfaI GTAC 1 cut(s) 1895
AgeI ACCGGT 1 cut(s) 1399
AgsI TTSAA 5 cut(s) 383, 409, 455, 2034, 2055
AjnI CCWGG 8 cut(s) 616, 667, 837, 1165, 1351, 1420, 1549, 1956
AleI CACNNNNGTG 2 cut(s) 426, 567
Alw21I GWGCWC 5 cut(s) 254, 423, 469, 1360, 1956
Alw26I GTCTC 1 cut(s) 1746
Alw44I GTGCAC 1 cut(s) 1952
AlwI GGATC 6 cut(s) 1295, 1520, 1533, 1566, 1711, 1743
Ama87I CYCGRG 1 cut(s) 1872
ApaLI GTGCAC 1 cut(s) 1952
ApeKI GCWGC 7 cut(s) 472, 475, 484, 860, 863, 1034, 1417
AsiGI ACCGGT 1 cut(s) 1399
Asp700I GAANNNNTTC 1 cut(s) 797
AspLEI GCGC 2 cut(s) 239, 1316
AsuC2I CCSGG 1 cut(s) 256
AsuHPI GGTGA 5 cut(s) 275, 927, 1565, 1607, 1637
AvaI CYCGRG 1 cut(s) 1872
AvaII GGWCC 6 cut(s) 100, 665, 1163, 1172, 1989, 2044
BaeGI GKGCMC 1 cut(s) 1956
BamHI GGATCC 1 cut(s) 1525
BanII GRGCYC 2 cut(s) 254, 1360
BbsI GAAGAC 1 cut(s) 1380
Bbv12I GWGCWC 5 cut(s) 254, 423, 469, 1360, 1956
BbvI GCAGC 7 cut(s) 484, 487, 496, 847, 850, 1021, 1404
BccI CCATC 6 cut(s) 53, 313, 875, 1279, 1539, 1623
BceAI ACGGC 5 cut(s) 25, 38, 82, 167, 2034
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 8 cut(s) 618, 669, 839, 1167, 1353, 1422, 1551, 1958
BclI TGATCA 1 cut(s) 1921
BcnI CCSGG 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 1746
BfaI CTAG 4 cut(s) 299, 1587, 2040, 2061
BfmI CTRYAG 1 cut(s) 940
BfoI RGCGCY 2 cut(s) 240, 1317
BfuAI ACCTGC 2 cut(s) 686, 976
BglI GCCNNNNNGGC 1 cut(s) 50
BglII AGATCT 2 cut(s) 2036, 2057
BlpI GCTNAGC 1 cut(s) 468
Bme1390I CCNGG 9 cut(s) 256, 618, 669, 839, 1167, 1353, 1422, 1551, 1958
Bme18I GGWCC 6 cut(s) 100, 665, 1163, 1172, 1989, 2044
BmeT110I CYCGRG 1 cut(s) 1872
BmiI GGNNCC 9 cut(s) 19, 222, 980, 1023, 1130, 1527, 1859, 1991, 2045
BmrFI CCNGG 9 cut(s) 256, 618, 669, 839, 1167, 1353, 1422, 1551, 1958
BmrI ACTGGG 1 cut(s) 1135
BmsI GCATC 9 cut(s) 487, 733, 876, 941, 1021, 1257, 1455, 1470, 1816
BmuI ACTGGG 1 cut(s) 1135
BpiI GAAGAC 1 cut(s) 1380
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpmI CTGGAG 2 cut(s) 773, 1443
Bpu1102I GCTNAGC 1 cut(s) 468
BpuEI CTTGAG 2 cut(s) 628, 951
BpuMI CCSGG 1 cut(s) 256
BsaBI GATNNNNATC 3 cut(s) 1734, 1827, 1881
BsaJI CCNNGG 7 cut(s) 78, 183, 255, 867, 1013, 1132, 1470
BsaWI WCCGGW 1 cut(s) 1399
BsaXI ACNNNNNCTCC 2 cut(s) 746, 776
Bse118I RCCGGY 1 cut(s) 1399
Bse1I ACTGG 4 cut(s) 734, 813, 1130, 1700
Bse8I GATNNNNATC 3 cut(s) 1734, 1827, 1881
BseBI CCWGG 8 cut(s) 618, 669, 839, 1167, 1353, 1422, 1551, 1958
BseDI CCNNGG 7 cut(s) 78, 183, 255, 867, 1013, 1132, 1470
BseGI GGATG 9 cut(s) 378, 748, 886, 891, 1386, 1470, 1550, 1966, 2071
BseJI GATNNNNATC 3 cut(s) 1734, 1827, 1881
BseMII CTCAG 4 cut(s) 482, 1157, 1289, 2091
BseNI ACTGG 4 cut(s) 734, 813, 1130, 1700
BseRI GAGGAG 4 cut(s) 95, 203, 687, 1422
BseSI GKGCMC 1 cut(s) 1956
BseX3I CGGCCG 1 cut(s) 51
BseXI GCAGC 7 cut(s) 484, 487, 496, 847, 850, 1021, 1404
BseYI CCCAGC 2 cut(s) 1037, 1577
BsgI GTGCAG 2 cut(s) 714, 984
Bsh1236I CGCG 1 cut(s) 1881
Bsh1285I CGRYCG 2 cut(s) 54, 1885
BshTI ACCGGT 1 cut(s) 1399
BsiEI CGRYCG 2 cut(s) 54, 1885
BsiHKAI GWGCWC 5 cut(s) 254, 423, 469, 1360, 1956
BsiHKCI CYCGRG 1 cut(s) 1872
BsiSI CCGG 4 cut(s) 209, 255, 1400, 1523
BslFI GGGAC 3 cut(s) 1706, 1853, 2057
BsmAI GTCTC 1 cut(s) 1746
BsmFI GGGAC 3 cut(s) 1706, 1853, 2057
BsmI GAATGC 1 cut(s) 1663
BsoBI CYCGRG 1 cut(s) 1872
Bsp1286I GDGCHC 5 cut(s) 254, 423, 469, 1360, 1956
Bsp1720I GCTNAGC 1 cut(s) 468
Bsp19I CCATGG 2 cut(s) 867, 1470
Bsp68I TCGCGA 1 cut(s) 1881
BspCNI CTCAG 4 cut(s) 481, 1156, 1288, 2092
BspFNI CGCG 1 cut(s) 1881
BspHI TCATGA 2 cut(s) 1636, 1780
BspLI GGNNCC 9 cut(s) 19, 222, 980, 1023, 1130, 1527, 1859, 1991, 2045
BspMI ACCTGC 2 cut(s) 686, 976
BspPI GGATC 6 cut(s) 1295, 1520, 1533, 1566, 1711, 1743
BsrBI CCGCTC 1 cut(s) 1837
BsrFI RCCGGY 1 cut(s) 1399
BsrI ACTGG 4 cut(s) 734, 813, 1130, 1700
BssAI RCCGGY 1 cut(s) 1399
BssECI CCNNGG 7 cut(s) 78, 183, 255, 867, 1013, 1132, 1470
BssT1I CCWWGG 3 cut(s) 867, 1013, 1470
Bst2UI CCWGG 8 cut(s) 618, 669, 839, 1167, 1353, 1422, 1551, 1958
Bst4CI ACNGT 8 cut(s) 35, 558, 566, 647, 662, 1787, 1951, 2027
Bst6I CTCTTC 1 cut(s) 2075
BstC8I GCNNGC 3 cut(s) 393, 874, 2005
BstDEI CTNAG 4 cut(s) 468, 1143, 1275, 2100
BstDSI CCRYGG 3 cut(s) 183, 867, 1470
BstEII GGTNACC 1 cut(s) 988
BstF5I GGATG 9 cut(s) 378, 748, 886, 891, 1386, 1470, 1550, 1966, 2071
BstFNI CGCG 1 cut(s) 1881
BstH2I RGCGCY 2 cut(s) 240, 1317
BstHHI GCGC 2 cut(s) 239, 1316
BstMAI GTCTC 1 cut(s) 1746
BstMCI CGRYCG 2 cut(s) 54, 1885
BstMWI GCNNNNNNNGC 7 cut(s) 50, 258, 481, 484, 701, 869, 1313
BstNI CCWGG 8 cut(s) 618, 669, 839, 1167, 1353, 1422, 1551, 1958
BstNSI RCATGY 1 cut(s) 1759
BstPI GGTNACC 1 cut(s) 988
BstSCI CCNGG 9 cut(s) 254, 616, 667, 837, 1165, 1351, 1420, 1549, 1956
BstSFI CTRYAG 1 cut(s) 940
BstSLI GKGCMC 1 cut(s) 1956
BstUI CGCG 1 cut(s) 1881
BstV1I GCAGC 7 cut(s) 484, 487, 496, 847, 850, 1021, 1404
BstV2I GAAGAC 1 cut(s) 1380
BstX2I RGATCY 4 cut(s) 1525, 1703, 2036, 2057
BstXI CCANNNNNNTGG 1 cut(s) 1622
BstYI RGATCY 4 cut(s) 1525, 1703, 2036, 2057
BstZI CGGCCG 1 cut(s) 51
BtgI CCRYGG 3 cut(s) 183, 867, 1470
BtsCI GGATG 9 cut(s) 378, 748, 886, 891, 1386, 1470, 1550, 1966, 2071
BtsI GCAGTG 1 cut(s) 367
BtsIMutI CAGTG 5 cut(s) 367, 667, 688, 727, 820
BtuMI TCGCGA 1 cut(s) 1881
BveI ACCTGC 2 cut(s) 686, 976
Cac8I GCNNGC 3 cut(s) 393, 874, 2005
CciI TCATGA 2 cut(s) 1636, 1780
CfoI GCGC 2 cut(s) 239, 1316
Cfr10I RCCGGY 1 cut(s) 1399
CseI GACGC 1 cut(s) 384
CsiI ACCWGGT 1 cut(s) 616
Csp6I GTAC 1 cut(s) 1894
CspAI ACCGGT 1 cut(s) 1399
CviAII CATG 9 cut(s) 868, 890, 915, 1436, 1471, 1562, 1637, 1756, 1781
CviQI GTAC 1 cut(s) 1894
DdeI CTNAG 4 cut(s) 468, 1143, 1275, 2100
DraI TTTAAA 1 cut(s) 172
EaeI YGGCCR 3 cut(s) 51, 911, 1520
EagI CGGCCG 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 2075
EarI CTCTTC 1 cut(s) 2075
EciI GGCGGA 1 cut(s) 773
Ecl136II GAGCTC 2 cut(s) 252, 1358
EclXI CGGCCG 1 cut(s) 51
Eco130I CCWWGG 3 cut(s) 867, 1013, 1470
Eco24I GRGCYC 2 cut(s) 254, 1360
Eco47I GGWCC 6 cut(s) 100, 665, 1163, 1172, 1989, 2044
Eco52I CGGCCG 1 cut(s) 51
Eco53kI GAGCTC 2 cut(s) 252, 1358
Eco57I CTGAAG 1 cut(s) 2034
Eco88I CYCGRG 1 cut(s) 1872
Eco91I GGTNACC 1 cut(s) 988
EcoICRI GAGCTC 2 cut(s) 252, 1358
EcoO109I RGGNCCY 4 cut(s) 100, 350, 1022, 1989
EcoO65I GGTNACC 1 cut(s) 988
EcoRII CCWGG 8 cut(s) 616, 667, 837, 1165, 1351, 1420, 1549, 1956
EcoT14I CCWWGG 3 cut(s) 867, 1013, 1470
EcoT22I ATGCAT 1 cut(s) 891
EcoT38I GRGCYC 2 cut(s) 254, 1360
ErhI CCWWGG 3 cut(s) 867, 1013, 1470
FaeI CATG 9 cut(s) 871, 893, 918, 1439, 1474, 1565, 1640, 1759, 1784
FalI AAGNNNNNCTT 2 cut(s) 1991, 2023
FaqI GGGAC 3 cut(s) 1706, 1853, 2057
FatI CATG 9 cut(s) 867, 889, 914, 1435, 1470, 1561, 1636, 1755, 1780
FauI CCCGC 1 cut(s) 1830
FbaI TGATCA 1 cut(s) 1921
FblI GTMKAC 2 cut(s) 843, 1982
FokI GGATG 9 cut(s) 385, 755, 893, 898, 1393, 1477, 1557, 1973, 2078
FriOI GRGCYC 2 cut(s) 254, 1360
FspBI CTAG 4 cut(s) 299, 1587, 2040, 2061
GlaI GCGC 2 cut(s) 238, 1315
GsaI CCCAGC 2 cut(s) 1041, 1581
GsuI CTGGAG 2 cut(s) 773, 1443
HaeII RGCGCY 2 cut(s) 240, 1317
HapII CCGG 4 cut(s) 209, 255, 1400, 1523
HgaI GACGC 1 cut(s) 384
HhaI GCGC 2 cut(s) 239, 1316
Hin1II CATG 9 cut(s) 871, 893, 918, 1439, 1474, 1565, 1640, 1759, 1784
Hin6I GCGC 2 cut(s) 237, 1314
HinP1I GCGC 2 cut(s) 237, 1314
HincII GTYRAC 1 cut(s) 1498
HindII GTYRAC 1 cut(s) 1498
HinfI GANTC 5 cut(s) 295, 678, 854, 1441, 1583
HpaII CCGG 4 cut(s) 209, 255, 1400, 1523
HphI GGTGA 5 cut(s) 275, 927, 1565, 1607, 1637
Hpy166II GTNNAC 6 cut(s) 643, 735, 844, 1498, 1954, 1983
Hpy8I GTNNAC 6 cut(s) 643, 735, 844, 1498, 1954, 1983
Hpy99I CGWCG 8 cut(s) 11, 17, 59, 65, 68, 92, 400, 2031
HpyAV CCTTC 4 cut(s) 190, 778, 1660, 1797
HpyCH4III ACNGT 8 cut(s) 35, 558, 566, 647, 662, 1787, 1951, 2027
HpyCH4IV ACGT 1 cut(s) 1867
HpyF10VI GCNNNNNNNGC 7 cut(s) 50, 258, 481, 484, 701, 869, 1313
HpyF3I CTNAG 4 cut(s) 468, 1143, 1275, 2100
HpySE526I ACGT 1 cut(s) 1867
Hsp92II CATG 9 cut(s) 871, 893, 918, 1439, 1474, 1565, 1640, 1759, 1784
HspAI GCGC 2 cut(s) 237, 1314
Ksp22I TGATCA 1 cut(s) 1921
LmnI GCTCC 9 cut(s) 17, 226, 244, 257, 776, 1321, 1355, 1363, 1435
Lsp1109I GCAGC 7 cut(s) 484, 487, 496, 847, 850, 1021, 1404
LweI GCATC 9 cut(s) 487, 733, 876, 941, 1021, 1257, 1455, 1470, 1816
MabI ACCWGGT 1 cut(s) 616
MaeI CTAG 4 cut(s) 299, 1587, 2040, 2061
MaeII ACGT 1 cut(s) 1867
MaeIII GTNAC 4 cut(s) 35, 558, 988, 1886
MbiI CCGCTC 1 cut(s) 1837
MboII GAAGA 8 cut(s) 205, 1338, 1380, 1698, 1739, 1913, 2027, 2092
MflI RGATCY 4 cut(s) 1525, 1703, 2036, 2057
MhlI GDGCHC 5 cut(s) 254, 423, 469, 1360, 1956
MluCI AATT 5 cut(s) 383, 404, 488, 1078, 1138
MlyI GAGTC 1 cut(s) 1592
MmeI TCCRAC 1 cut(s) 607
Mph1103I ATGCAT 1 cut(s) 891
MroXI GAANNNNTTC 1 cut(s) 797
MseI TTAA 4 cut(s) 171, 903, 948, 1827
MslI CAYNNNNRTG 8 cut(s) 426, 567, 1475, 1566, 1620, 1785, 1812, 1959
MspI CCGG 4 cut(s) 209, 255, 1400, 1523
MspR9I CCNGG 9 cut(s) 256, 618, 669, 839, 1167, 1353, 1422, 1551, 1958
Mva1269I GAATGC 1 cut(s) 1663
MvaI CCWGG 8 cut(s) 618, 669, 839, 1167, 1353, 1422, 1551, 1958
MvnI CGCG 1 cut(s) 1881
MwoI GCNNNNNNNGC 7 cut(s) 50, 258, 481, 484, 701, 869, 1313
NciI CCSGG 1 cut(s) 256
NcoI CCATGG 2 cut(s) 867, 1470
NlaIII CATG 9 cut(s) 871, 893, 918, 1439, 1474, 1565, 1640, 1759, 1784
NlaIV GGNNCC 9 cut(s) 19, 222, 980, 1023, 1130, 1527, 1859, 1991, 2045
NmeAIII GCCGAG 4 cut(s) 29, 103, 1157, 1886
NmuCI GTSAC 1 cut(s) 1886
NruI TCGCGA 1 cut(s) 1881
NsiI ATGCAT 1 cut(s) 891
NspI RCATGY 1 cut(s) 1759
OliI CACNNNNGTG 2 cut(s) 426, 567
PaeR7I CTCGAG 1 cut(s) 1872
PagI TCATGA 2 cut(s) 1636, 1780
PaqCI CACCTGC 1 cut(s) 686
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 1663
PdmI GAANNNNTTC 1 cut(s) 797
PfeI GAWTC 4 cut(s) 295, 678, 854, 1441
PflMI CCANNNNNTGG 2 cut(s) 1310, 1403
PfoI TCCNGGA 2 cut(s) 667, 1351
PinAI ACCGGT 1 cut(s) 1399
Ple19I CGATCG 1 cut(s) 1885
PleI GAGTC 1 cut(s) 1591
PpsI GAGTC 1 cut(s) 1591
PpuMI RGGWCCY 2 cut(s) 100, 1989
Psp124BI GAGCTC 2 cut(s) 254, 1360
Psp1406I AACGTT 1 cut(s) 1867
Psp5II RGGWCCY 2 cut(s) 100, 1989
Psp6I CCWGG 8 cut(s) 616, 667, 837, 1165, 1351, 1420, 1549, 1956
PspEI GGTNACC 1 cut(s) 988
PspFI CCCAGC 2 cut(s) 1037, 1577
PspGI CCWGG 8 cut(s) 616, 667, 837, 1165, 1351, 1420, 1549, 1956
PspN4I GGNNCC 9 cut(s) 19, 222, 980, 1023, 1130, 1527, 1859, 1991, 2045
PspPPI RGGWCCY 2 cut(s) 100, 1989
PsuI RGATCY 4 cut(s) 1525, 1703, 2036, 2057
PvuI CGATCG 1 cut(s) 1885
RruI TCGCGA 1 cut(s) 1881
RsaI GTAC 1 cut(s) 1895
RsaNI GTAC 1 cut(s) 1894
RseI CAYNNNNRTG 8 cut(s) 426, 567, 1475, 1566, 1620, 1785, 1812, 1959
SacI GAGCTC 2 cut(s) 254, 1360
SaqAI TTAA 4 cut(s) 171, 903, 948, 1827
SchI GAGTC 1 cut(s) 1592
ScrFI CCNGG 9 cut(s) 256, 618, 669, 839, 1167, 1353, 1422, 1551, 1958
SduI GDGCHC 5 cut(s) 254, 423, 469, 1360, 1956
SexAI ACCWGGT 1 cut(s) 616
SfaNI GCATC 9 cut(s) 487, 733, 876, 941, 1021, 1257, 1455, 1470, 1816
SfcI CTRYAG 1 cut(s) 940
SfiI GGCCNNNNNGGCC 1 cut(s) 50
Sfr274I CTCGAG 1 cut(s) 1872
SinI GGWCC 6 cut(s) 100, 665, 1163, 1172, 1989, 2044
SlaI CTCGAG 1 cut(s) 1872
SmiMI CAYNNNNRTG 8 cut(s) 426, 567, 1475, 1566, 1620, 1785, 1812, 1959
SmlI CTYRAG 3 cut(s) 607, 966, 1872
SmoI CTYRAG 3 cut(s) 607, 966, 1872
Sse9I AATT 5 cut(s) 383, 404, 488, 1078, 1138
SspMI CTAG 4 cut(s) 299, 1587, 2040, 2061
SstI GAGCTC 2 cut(s) 254, 1360
StyD4I CCNGG 9 cut(s) 254, 616, 667, 837, 1165, 1351, 1420, 1549, 1956
StyI CCWWGG 3 cut(s) 867, 1013, 1470
TaaI ACNGT 8 cut(s) 35, 558, 566, 647, 662, 1787, 1951, 2027
TaiI ACGT 1 cut(s) 1870
TaqI TCGA 4 cut(s) 398, 801, 1831, 1873
TasI AATT 5 cut(s) 383, 404, 488, 1078, 1138
TauI GCSGC 3 cut(s) 913, 2089, 2092
TfiI GAWTC 4 cut(s) 295, 678, 854, 1441
Tru1I TTAA 4 cut(s) 171, 903, 948, 1827
Tru9I TTAA 4 cut(s) 171, 903, 948, 1827
TscAI CASTG 5 cut(s) 367, 667, 688, 734, 820
TseFI GTSAC 1 cut(s) 1886
TseI GCWGC 7 cut(s) 472, 475, 484, 860, 863, 1034, 1417
Tsp45I GTSAC 1 cut(s) 1886
TspDTI ATGAA 3 cut(s) 1380, 1679, 1977
TspGWI ACGGA 2 cut(s) 30, 755
TspRI CASTG 5 cut(s) 367, 667, 688, 734, 820
Van91I CCANNNNNTGG 2 cut(s) 1310, 1403
VneI GTGCAC 1 cut(s) 1952
VpaK11BI GGWCC 6 cut(s) 100, 665, 1163, 1172, 1989, 2044
XceI RCATGY 1 cut(s) 1759
XhoI CTCGAG 1 cut(s) 1872
XmiI GTMKAC 2 cut(s) 843, 1982
XmnI GAANNNNTTC 1 cut(s) 797
XspI CTAG 4 cut(s) 299, 1587, 2040, 2061
Zsp2I ATGCAT 1 cut(s) 891
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.