Rh5DG379100

cleavage and polyadenylation specificity factor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0006731
Physical Location & Seq
Forward (+)
57681226 .. 57686993
5768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG379100.1

Sequence Viewer

Length: 2112 bp
ATGGACGACGGCGACGGAGCCGATCATTTCCACCGCAACGAGGCCATCTCGGCCGTCGCCGACGACGGCTTTTTAGCCGAGGAGGACGACGACTACGAGGACCTCTACAACGATGTGAATGTCGGCGAGGGGTTTTATCAGTCTATGAGAAAGAGCGAGGATTTAGGGTTTAAAAATGAGGCCGTGGAGGAGAAGAAGGTTGAGTTGCCGGAGGTTTCGGCTCCGCAACATCAAGGCGCTCCGATACCGAGCTCCGGGGGCGGTGAGGGTAGGGGTTCTGGGTTCGGTAATCAGAATCTAGGGTTTAGAGGGAACGAGATGGGTGCGAAAGGGAGTGGTGGGTTGGGAGGGCCTGTTGGCAGTGGAGGTGGGATGAGGATTGAATTAGGGCAAGCGTCGAGTAAATTGAATGAGTTTGAGCACCAAAGTGGGAATAGTGTTGGTCTTGGGGTTCAAGGGATTGGTGCTCAGCAGCAGCATCAGCATCAGCAGCAATTACAACCGCAACATCAACTGCAACCGCAACCGCAATCGCAACTGCAACCTCCACAGCAACATCAACAGTTACACGGTGGTGCTGTTGCTGTTGGGAATGTGGGGAATGAGGGTTTCTTGAGGCAACCTGGTGGTGTCGGAGGGGGGAATATGAACGGTGTTGGTGGGAACAGTGGTCCAGGAGGAGGATTCAGTGGGGGTGGTGCAGGTGGGGCAACATTGTATGTGGGGGATTTGCACTGGTGGACAACGGATGCAGAGCTGGAGGCAGAGTTGTGCAAGTATGGAGCTGTGAAGGAAGTGAAGTTTTTCGATGAGAAAGCCAGTGGGAAGTCAAAAGGATATTGCCAGGTAGACTTCTATGATTCTGCTGCTGCCATGGCCTGCAAGGATGGGATGCATGGGCATTTGTTTAATGGGCGGCCATGTGTTGTTGCTTTTGCATCACCCTATAGTGTTAAGAGAATGGGGGAGGCTCAAGTGAATAGGAACCAGCAGGTAACCCAAACTGCACAAGCTCAACCAAGGAGGGGGCCTAATGATGCTGCTGGGAATAAAGTTGGTGGGAGTGCCATAACAACAGGTGGGAATTATCAAGGTGGGGATAATAACAGCAGAGGTTTTGGGAGAGCTAACTGGGGCCGAGGTAATTCTCAGGGTATGGGAGGTAGAGGTCCAGGTGGTCCGATGAGGAATAGGGGTGGAATGAGTGGCAGAGGTATAATGGGGAATGGTGGAAACGGGTTTGGGCAAGGTATGGGGGCAACCCCTCCTTTGATGCACCCTCAGTCAATGATGGGTCAGGGCTTTGATCCAGCTTTTGGTGCTCCAATGGGAAGAATGGGGAGTTATGGAGGCTTTCCAGGAGCTCCACAGCCTCCTTTCTCTGGGATGATGTCTTCATTCCCACCAGTTGGGGGTGTTGGGCTGCCTGGAGTAGCTCCTCATGTGAATCCTGCATTTTTTGGACGAGGGATGCCCATGGGAATGATGCCGACATCAGGTGTTGACGGGCCTAATATGGGAATGTGGCCGGATCCTAATATGGGGGGTGGATGGCCTGGTGAGGATCATGGTGGTGGCAGAGCTGGGGAGTCTAGTTATGGTGAGGAAGCTGGTTCTGACCATCAATATGGTGAGGGTAGTCATGATAGAGGTGGGTGGCAGAATGCTATGAAGGAGAAAGATAGAGGTTCAGAGAGGGACTGGTCTGGATCTTCTGATAGGAGGTATCGGGAAGATAGGGATCAAGGGTTTGACAGAGACATGCCAAGAGAGAAAGAAGTGGGTCATGACCGTGAATGGTCTGAAAGAAGGCATCGGAATGATGTAGATGTTAATCGAGAGCGGGACAGAGAGCGTGATAGGGGCCGAGAACGTTCTCGAGATCGCGATCGTGACAGGTACAGGGAAGATAGAGAAAGATATGCTGATCATCATAAATACAGAGATCATGAAACGGTGCACCAGGATGAAATAGAAAGGGGGAGGTCTACAAGGACCCATAGTAAGGCACGCTTATCTGAAGATGATGACCGTCGTTCAAGATCTAGGGACCGCCGTTCAAGATCTAGGGATGTTGATTATGGGAAGAGGCGGCGGCTAACTTCTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000381 GO:0000785 GO:0000790 GO:0000791 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005694 GO:0005719 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006508 GO:0006509 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0031982 GO:0032774 GO:0032991 GO:0033119 GO:0033120 GO:0033619 GO:0034097 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043230 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044530 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048024 GO:0048025 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051259 GO:0051260 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070062 GO:0070555 GO:0070887 GO:0071013 GO:0071310 GO:0071345 GO:0071347 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903311 GO:1903312 GO:1903313 GO:1903506 GO:1903508 GO:1903561 GO:1990837 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
RRM_1

Protein Analysis

703

Amino Acids

75.76

Weight (kDa)

6.14

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 239 - 308 2.8e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 692
Acc36I ACCTGC 2 cut(s) 692, 982
AccB7I CCANNNNNTGG 2 cut(s) 1316, 1409
AccBSI CCGCTC 1 cut(s) 1843
AccI GTMKAC 2 cut(s) 849, 1988
AccII CGCG 1 cut(s) 1887
AclI AACGTT 1 cut(s) 1873
AclWI GGATC 6 cut(s) 1301, 1526, 1539, 1572, 1717, 1749
AcoI YGGCCR 3 cut(s) 51, 917, 1526
AcuI CTGAAG 1 cut(s) 2040
AfaI GTAC 1 cut(s) 1901
AgsI TTSAA 5 cut(s) 383, 409, 455, 2040, 2061
AjnI CCWGG 8 cut(s) 622, 673, 843, 1171, 1357, 1426, 1555, 1962
AleI CACNNNNGTG 2 cut(s) 426, 573
Alw21I GWGCWC 6 cut(s) 254, 423, 469, 1324, 1366, 1962
Alw26I GTCTC 1 cut(s) 1752
Alw44I GTGCAC 1 cut(s) 1958
AlwI GGATC 6 cut(s) 1301, 1526, 1539, 1572, 1717, 1749
Ama87I CYCGRG 1 cut(s) 1878
ApaLI GTGCAC 1 cut(s) 1958
ApeKI GCWGC 7 cut(s) 472, 475, 490, 866, 869, 1040, 1423
Asp700I GAANNNNTTC 1 cut(s) 803
AspLEI GCGC 1 cut(s) 239
AsuC2I CCSGG 1 cut(s) 256
AsuHPI GGTGA 5 cut(s) 275, 933, 1571, 1613, 1643
AvaI CYCGRG 1 cut(s) 1878
AvaII GGWCC 6 cut(s) 100, 671, 1169, 1178, 1995, 2050
BaeGI GKGCMC 1 cut(s) 1962
BamHI GGATCC 1 cut(s) 1531
BanII GRGCYC 2 cut(s) 254, 1366
BbsI GAAGAC 1 cut(s) 1386
Bbv12I GWGCWC 6 cut(s) 254, 423, 469, 1324, 1366, 1962
BbvI GCAGC 7 cut(s) 484, 487, 502, 853, 856, 1027, 1410
BccI CCATC 6 cut(s) 53, 313, 881, 1285, 1545, 1629
BceAI ACGGC 5 cut(s) 25, 38, 82, 167, 2040
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 8 cut(s) 624, 675, 845, 1173, 1359, 1428, 1557, 1964
BclI TGATCA 1 cut(s) 1927
BcnI CCSGG 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 1752
BfaI CTAG 4 cut(s) 299, 1593, 2046, 2067
BfmI CTRYAG 1 cut(s) 946
BfoI RGCGCY 1 cut(s) 240
BfuAI ACCTGC 2 cut(s) 692, 982
BglI GCCNNNNNGGC 1 cut(s) 50
BglII AGATCT 2 cut(s) 2042, 2063
BlpI GCTNAGC 1 cut(s) 468
Bme1390I CCNGG 9 cut(s) 256, 624, 675, 845, 1173, 1359, 1428, 1557, 1964
Bme18I GGWCC 6 cut(s) 100, 671, 1169, 1178, 1995, 2050
BmeT110I CYCGRG 1 cut(s) 1878
BmiI GGNNCC 9 cut(s) 19, 222, 986, 1029, 1136, 1533, 1865, 1997, 2051
BmrFI CCNGG 9 cut(s) 256, 624, 675, 845, 1173, 1359, 1428, 1557, 1964
BmrI ACTGGG 1 cut(s) 1141
BmuI ACTGGG 1 cut(s) 1141
BpiI GAAGAC 1 cut(s) 1386
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpmI CTGGAG 2 cut(s) 779, 1449
Bpu1102I GCTNAGC 1 cut(s) 468
BpuEI CTTGAG 2 cut(s) 634, 957
BpuMI CCSGG 1 cut(s) 256
BsaBI GATNNNNATC 3 cut(s) 1740, 1833, 1887
BsaJI CCNNGG 7 cut(s) 78, 183, 255, 873, 1019, 1138, 1476
BsaXI ACNNNNNCTCC 4 cut(s) 339, 369, 752, 782
Bse1I ACTGG 5 cut(s) 740, 819, 1136, 1406, 1706
Bse8I GATNNNNATC 3 cut(s) 1740, 1833, 1887
BseBI CCWGG 8 cut(s) 624, 675, 845, 1173, 1359, 1428, 1557, 1964
BseDI CCNNGG 7 cut(s) 78, 183, 255, 873, 1019, 1138, 1476
BseGI GGATG 9 cut(s) 378, 754, 892, 897, 1392, 1476, 1556, 1972, 2077
BseJI GATNNNNATC 3 cut(s) 1740, 1833, 1887
BseMII CTCAG 4 cut(s) 482, 1163, 1295, 2097
BseNI ACTGG 5 cut(s) 740, 819, 1136, 1406, 1706
BseRI GAGGAG 4 cut(s) 95, 203, 693, 1428
BseSI GKGCMC 1 cut(s) 1962
BseX3I CGGCCG 1 cut(s) 51
BseXI GCAGC 7 cut(s) 484, 487, 502, 853, 856, 1027, 1410
BseYI CCCAGC 2 cut(s) 1043, 1583
BsgI GTGCAG 2 cut(s) 720, 990
Bsh1236I CGCG 1 cut(s) 1887
Bsh1285I CGRYCG 2 cut(s) 54, 1891
BsiEI CGRYCG 2 cut(s) 54, 1891
BsiHKAI GWGCWC 6 cut(s) 254, 423, 469, 1324, 1366, 1962
BsiHKCI CYCGRG 1 cut(s) 1878
BsiSI CCGG 3 cut(s) 209, 255, 1529
BslFI GGGAC 3 cut(s) 1712, 1859, 2063
BsmAI GTCTC 1 cut(s) 1752
BsmFI GGGAC 3 cut(s) 1712, 1859, 2063
BsmI GAATGC 1 cut(s) 1669
BsoBI CYCGRG 1 cut(s) 1878
Bsp1286I GDGCHC 6 cut(s) 254, 423, 469, 1324, 1366, 1962
Bsp1720I GCTNAGC 1 cut(s) 468
Bsp19I CCATGG 2 cut(s) 873, 1476
Bsp68I TCGCGA 1 cut(s) 1887
BspCNI CTCAG 4 cut(s) 481, 1162, 1294, 2098
BspFNI CGCG 1 cut(s) 1887
BspHI TCATGA 3 cut(s) 1642, 1786, 1948
BspLI GGNNCC 9 cut(s) 19, 222, 986, 1029, 1136, 1533, 1865, 1997, 2051
BspMI ACCTGC 2 cut(s) 692, 982
BspPI GGATC 6 cut(s) 1301, 1526, 1539, 1572, 1717, 1749
BsrBI CCGCTC 1 cut(s) 1843
BsrI ACTGG 5 cut(s) 740, 819, 1136, 1406, 1706
BssECI CCNNGG 7 cut(s) 78, 183, 255, 873, 1019, 1138, 1476
BssT1I CCWWGG 3 cut(s) 873, 1019, 1476
Bst2UI CCWGG 8 cut(s) 624, 675, 845, 1173, 1359, 1428, 1557, 1964
Bst4CI ACNGT 7 cut(s) 564, 572, 653, 668, 1793, 1957, 2033
Bst6I CTCTTC 1 cut(s) 2081
BstC8I GCNNGC 3 cut(s) 393, 880, 2011
BstDEI CTNAG 4 cut(s) 468, 1149, 1281, 2106
BstDSI CCRYGG 3 cut(s) 183, 873, 1476
BstEII GGTNACC 1 cut(s) 994
BstF5I GGATG 9 cut(s) 378, 754, 892, 897, 1392, 1476, 1556, 1972, 2077
BstFNI CGCG 1 cut(s) 1887
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 1 cut(s) 239
BstMAI GTCTC 1 cut(s) 1752
BstMCI CGRYCG 2 cut(s) 54, 1891
BstMWI GCNNNNNNNGC 7 cut(s) 50, 258, 481, 490, 707, 875, 1319
BstNI CCWGG 8 cut(s) 624, 675, 845, 1173, 1359, 1428, 1557, 1964
BstNSI RCATGY 1 cut(s) 1765
BstPI GGTNACC 1 cut(s) 994
BstSCI CCNGG 9 cut(s) 254, 622, 673, 843, 1171, 1357, 1426, 1555, 1962
BstSFI CTRYAG 1 cut(s) 946
BstSLI GKGCMC 1 cut(s) 1962
BstUI CGCG 1 cut(s) 1887
BstV1I GCAGC 7 cut(s) 484, 487, 502, 853, 856, 1027, 1410
BstV2I GAAGAC 1 cut(s) 1386
BstX2I RGATCY 4 cut(s) 1531, 1709, 2042, 2063
BstXI CCANNNNNNTGG 1 cut(s) 1628
BstYI RGATCY 4 cut(s) 1531, 1709, 2042, 2063
BstZI CGGCCG 1 cut(s) 51
BtgI CCRYGG 3 cut(s) 183, 873, 1476
BtsCI GGATG 9 cut(s) 378, 754, 892, 897, 1392, 1476, 1556, 1972, 2077
BtsI GCAGTG 1 cut(s) 367
BtsIMutI CAGTG 5 cut(s) 367, 673, 694, 733, 826
BtuMI TCGCGA 1 cut(s) 1887
BveI ACCTGC 2 cut(s) 692, 982
Cac8I GCNNGC 3 cut(s) 393, 880, 2011
CciI TCATGA 3 cut(s) 1642, 1786, 1948
CfoI GCGC 1 cut(s) 239
CseI GACGC 1 cut(s) 384
CsiI ACCWGGT 1 cut(s) 622
Csp6I GTAC 1 cut(s) 1900
CviQI GTAC 1 cut(s) 1900
DdeI CTNAG 4 cut(s) 468, 1149, 1281, 2106
DraI TTTAAA 1 cut(s) 172
EaeI YGGCCR 3 cut(s) 51, 917, 1526
EagI CGGCCG 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 2081
EarI CTCTTC 1 cut(s) 2081
Ecl136II GAGCTC 2 cut(s) 252, 1364
EclXI CGGCCG 1 cut(s) 51
Eco130I CCWWGG 3 cut(s) 873, 1019, 1476
Eco24I GRGCYC 2 cut(s) 254, 1366
Eco47I GGWCC 6 cut(s) 100, 671, 1169, 1178, 1995, 2050
Eco52I CGGCCG 1 cut(s) 51
Eco53kI GAGCTC 2 cut(s) 252, 1364
Eco57I CTGAAG 1 cut(s) 2040
Eco88I CYCGRG 1 cut(s) 1878
Eco91I GGTNACC 1 cut(s) 994
EcoICRI GAGCTC 2 cut(s) 252, 1364
EcoO109I RGGNCCY 4 cut(s) 100, 350, 1028, 1995
EcoO65I GGTNACC 1 cut(s) 994
EcoRII CCWGG 8 cut(s) 622, 673, 843, 1171, 1357, 1426, 1555, 1962
EcoT14I CCWWGG 3 cut(s) 873, 1019, 1476
EcoT22I ATGCAT 1 cut(s) 897
EcoT38I GRGCYC 2 cut(s) 254, 1366
ErhI CCWWGG 3 cut(s) 873, 1019, 1476
FalI AAGNNNNNCTT 2 cut(s) 1997, 2029
FaqI GGGAC 3 cut(s) 1712, 1859, 2063
FauI CCCGC 1 cut(s) 1836
FbaI TGATCA 1 cut(s) 1927
FblI GTMKAC 2 cut(s) 849, 1988
FokI GGATG 9 cut(s) 385, 761, 899, 904, 1399, 1483, 1563, 1979, 2084
FriOI GRGCYC 2 cut(s) 254, 1366
FspBI CTAG 4 cut(s) 299, 1593, 2046, 2067
GlaI GCGC 1 cut(s) 238
GsaI CCCAGC 2 cut(s) 1047, 1587
GsuI CTGGAG 2 cut(s) 779, 1449
HaeII RGCGCY 1 cut(s) 240
HapII CCGG 3 cut(s) 209, 255, 1529
HgaI GACGC 1 cut(s) 384
HhaI GCGC 1 cut(s) 239
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HincII GTYRAC 1 cut(s) 1504
HindII GTYRAC 1 cut(s) 1504
HinfI GANTC 5 cut(s) 295, 684, 860, 1447, 1589
HpaII CCGG 3 cut(s) 209, 255, 1529
HphI GGTGA 5 cut(s) 275, 933, 1571, 1613, 1643
Hpy166II GTNNAC 5 cut(s) 741, 850, 1504, 1960, 1989
Hpy8I GTNNAC 5 cut(s) 741, 850, 1504, 1960, 1989
Hpy99I CGWCG 8 cut(s) 11, 17, 59, 65, 68, 92, 400, 2037
HpyAV CCTTC 4 cut(s) 190, 784, 1666, 1803
HpyCH4III ACNGT 7 cut(s) 564, 572, 653, 668, 1793, 1957, 2033
HpyCH4IV ACGT 1 cut(s) 1873
HpyF10VI GCNNNNNNNGC 7 cut(s) 50, 258, 481, 490, 707, 875, 1319
HpyF3I CTNAG 4 cut(s) 468, 1149, 1281, 2106
HpySE526I ACGT 1 cut(s) 1873
HspAI GCGC 1 cut(s) 237
Ksp22I TGATCA 1 cut(s) 1927
LmnI GCTCC 9 cut(s) 17, 226, 244, 257, 782, 1327, 1361, 1369, 1441
Lsp1109I GCAGC 7 cut(s) 484, 487, 502, 853, 856, 1027, 1410
MabI ACCWGGT 1 cut(s) 622
MaeI CTAG 4 cut(s) 299, 1593, 2046, 2067
MaeII ACGT 1 cut(s) 1873
MaeIII GTNAC 3 cut(s) 564, 994, 1892
MbiI CCGCTC 1 cut(s) 1843
MboII GAAGA 8 cut(s) 205, 1344, 1386, 1704, 1745, 1919, 2033, 2098
MflI RGATCY 4 cut(s) 1531, 1709, 2042, 2063
MhlI GDGCHC 6 cut(s) 254, 423, 469, 1324, 1366, 1962
MluCI AATT 5 cut(s) 383, 404, 494, 1084, 1144
MlyI GAGTC 1 cut(s) 1598
MmeI TCCRAC 1 cut(s) 613
Mph1103I ATGCAT 1 cut(s) 897
MroXI GAANNNNTTC 1 cut(s) 803
MseI TTAA 4 cut(s) 171, 909, 954, 1833
MslI CAYNNNNRTG 8 cut(s) 426, 573, 1481, 1572, 1626, 1791, 1818, 1965
MspI CCGG 3 cut(s) 209, 255, 1529
MspR9I CCNGG 9 cut(s) 256, 624, 675, 845, 1173, 1359, 1428, 1557, 1964
Mva1269I GAATGC 1 cut(s) 1669
MvaI CCWGG 8 cut(s) 624, 675, 845, 1173, 1359, 1428, 1557, 1964
MvnI CGCG 1 cut(s) 1887
MwoI GCNNNNNNNGC 7 cut(s) 50, 258, 481, 490, 707, 875, 1319
NciI CCSGG 1 cut(s) 256
NcoI CCATGG 2 cut(s) 873, 1476
NlaIV GGNNCC 9 cut(s) 19, 222, 986, 1029, 1136, 1533, 1865, 1997, 2051
NmeAIII GCCGAG 4 cut(s) 29, 103, 1163, 1892
NmuCI GTSAC 1 cut(s) 1892
NruI TCGCGA 1 cut(s) 1887
NsiI ATGCAT 1 cut(s) 897
NspI RCATGY 1 cut(s) 1765
OliI CACNNNNGTG 2 cut(s) 426, 573
PaeR7I CTCGAG 1 cut(s) 1878
PagI TCATGA 3 cut(s) 1642, 1786, 1948
PaqCI CACCTGC 1 cut(s) 692
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 1669
PdmI GAANNNNTTC 1 cut(s) 803
PfeI GAWTC 4 cut(s) 295, 684, 860, 1447
PflMI CCANNNNNTGG 2 cut(s) 1316, 1409
PfoI TCCNGGA 2 cut(s) 673, 1357
Ple19I CGATCG 1 cut(s) 1891
PleI GAGTC 1 cut(s) 1597
PpsI GAGTC 1 cut(s) 1597
PpuMI RGGWCCY 2 cut(s) 100, 1995
Psp124BI GAGCTC 2 cut(s) 254, 1366
Psp1406I AACGTT 1 cut(s) 1873
Psp5II RGGWCCY 2 cut(s) 100, 1995
Psp6I CCWGG 8 cut(s) 622, 673, 843, 1171, 1357, 1426, 1555, 1962
PspEI GGTNACC 1 cut(s) 994
PspFI CCCAGC 2 cut(s) 1043, 1583
PspGI CCWGG 8 cut(s) 622, 673, 843, 1171, 1357, 1426, 1555, 1962
PspN4I GGNNCC 9 cut(s) 19, 222, 986, 1029, 1136, 1533, 1865, 1997, 2051
PspPPI RGGWCCY 2 cut(s) 100, 1995
PsuI RGATCY 4 cut(s) 1531, 1709, 2042, 2063
PvuI CGATCG 1 cut(s) 1891
RruI TCGCGA 1 cut(s) 1887
RsaI GTAC 1 cut(s) 1901
RsaNI GTAC 1 cut(s) 1900
RseI CAYNNNNRTG 8 cut(s) 426, 573, 1481, 1572, 1626, 1791, 1818, 1965
SacI GAGCTC 2 cut(s) 254, 1366
SaqAI TTAA 4 cut(s) 171, 909, 954, 1833
SchI GAGTC 1 cut(s) 1598
ScrFI CCNGG 9 cut(s) 256, 624, 675, 845, 1173, 1359, 1428, 1557, 1964
SduI GDGCHC 6 cut(s) 254, 423, 469, 1324, 1366, 1962
SexAI ACCWGGT 1 cut(s) 622
SfcI CTRYAG 1 cut(s) 946
SfiI GGCCNNNNNGGCC 1 cut(s) 50
Sfr274I CTCGAG 1 cut(s) 1878
SinI GGWCC 6 cut(s) 100, 671, 1169, 1178, 1995, 2050
SlaI CTCGAG 1 cut(s) 1878
SmiMI CAYNNNNRTG 8 cut(s) 426, 573, 1481, 1572, 1626, 1791, 1818, 1965
SmlI CTYRAG 3 cut(s) 613, 972, 1878
SmoI CTYRAG 3 cut(s) 613, 972, 1878
Sse9I AATT 5 cut(s) 383, 404, 494, 1084, 1144
SspMI CTAG 4 cut(s) 299, 1593, 2046, 2067
SstI GAGCTC 2 cut(s) 254, 1366
StyD4I CCNGG 9 cut(s) 254, 622, 673, 843, 1171, 1357, 1426, 1555, 1962
StyI CCWWGG 3 cut(s) 873, 1019, 1476
TaaI ACNGT 7 cut(s) 564, 572, 653, 668, 1793, 1957, 2033
TaiI ACGT 1 cut(s) 1876
TaqI TCGA 4 cut(s) 398, 807, 1837, 1879
TasI AATT 5 cut(s) 383, 404, 494, 1084, 1144
TauI GCSGC 3 cut(s) 919, 2095, 2098
TfiI GAWTC 4 cut(s) 295, 684, 860, 1447
Tru1I TTAA 4 cut(s) 171, 909, 954, 1833
Tru9I TTAA 4 cut(s) 171, 909, 954, 1833
TscAI CASTG 5 cut(s) 367, 673, 694, 740, 826
TseFI GTSAC 1 cut(s) 1892
TseI GCWGC 7 cut(s) 472, 475, 490, 866, 869, 1040, 1423
Tsp45I GTSAC 1 cut(s) 1892
TspDTI ATGAA 5 cut(s) 662, 1386, 1685, 1965, 1983
TspGWI ACGGA 2 cut(s) 30, 761
TspRI CASTG 5 cut(s) 367, 673, 694, 740, 826
Van91I CCANNNNNTGG 2 cut(s) 1316, 1409
VneI GTGCAC 1 cut(s) 1958
VpaK11BI GGWCC 6 cut(s) 100, 671, 1169, 1178, 1995, 2050
XceI RCATGY 1 cut(s) 1765
XhoI CTCGAG 1 cut(s) 1878
XmiI GTMKAC 2 cut(s) 849, 1988
XmnI GAANNNNTTC 1 cut(s) 803
XspI CTAG 4 cut(s) 299, 1593, 2046, 2067
Zsp2I ATGCAT 1 cut(s) 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.