MD11G1200300.v1.1

cleavage and polyadenylation specificity factor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0006731
Physical Location & Seq
Forward (+)
28870223 .. 28872379
2157 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1200300.v1.1.491

Sequence Viewer

Length: 1953 bp
ATGGATGAAGGCGACGGGGTCGATCAGATGGATCAGTTCCACCGCAACGAGGCGATCTCGGCGGTGGCCGACGATGGATTTTTGGCCGAGGAGGACGATGATTATGAGGACCTTTACAACGACGTCAATGTCGGCGAGGGGTTTTATCAGTCTATGAGAAAGAACGAGGATTTAGGGTTTAGGAATGAGGTGGCGGAGGAGAAGAAGGTTGCGGTTGAGTCACCCGATGTTGCGCCGTCGGAATCTCAAGGTGGTCCGATACCGGGTGTTGGGGGCGGTAACGGCGAGGGGACTGGTGGGGATGGGGGTGATGGAGGGGTTAGGGGTTCTGGGTATAATAATCAGAATCTTGGGTTTAGAGGGAACGAGATGAGTGCGAAGGGGAGTGGTGGGTTGGGGCCCCTTGGGGGCAGCGGAGGAGGTGGGATTAGGGTTGAATTAGGGCAAACATCAAATAAGGTGAATGAGTTTGAGCAACAAAGTGGGAATAATAGTGGTGTTGGGGTTCAAGGGATTGTTTCTCAGCAGCTGCTGCCCCAATTGCAACAACACCACCAACCACAACCTCCACCACAACAGCAACAATTACATGGTGCTGCTGCTGTTGGGAATATGGGGAATGAGGGCATGTTGAGACAAGCTGGTGGTGTTGGAAGTGGTAATATGAATGGGATTGGTGGGAATAGTGGTCCGGGAGGAGGATTTGGTGGTGCCGCTGGTGGTGGAGCTGGGACAATATTGTTTGTGGGTGATTTGCATTGGTGGACTACGGATGCAGAGCTGGAGGCAGAGTTGTGTAAGTATGGACCTGTGAAGGAAGTGAAGTTTTTCGATGAGAAAGCAAGTGGGAAGTCAAAAGGGTACTGTCAGGTTGAGTTTTTTAATCCTAATTCTGCCACGGCCTGCAAGGAAGGGATGCACGGGCATGTGTTTAATGGGCGGCCATGCGTTGTTGCGTTTGCATCACCATTCAGTGTTAAGAGAATGGGGGAGGCTCAAGTAAATAGGAACCAGCAGGTTGCCCAAACTGCAGTACCTCAAACTGGTGGGAGGAGGGGGCCCAACGAAGCCGGGAATAAAACTGGTGGGAGTAACATTGCGACTGGCGGGAATTATCAAGGTGGGGAGAGTAATAGAGGTTATGGGAGAGGTAACTGGGGGAGAGGTAATTCTCAGGGTATGGGAAATAGAGGACCAGTTGGTCCAAGGAATAGGGGTGTGATTGGAAGGGGTATAATGAGTAATGGTGGAAATGGGTTTGGGCAAGGTATTGGTGCAACCCCTCCTATGATGCACCCTCAGTCAATGATGGGTCAGGGTTTTGATCCTGCTTTTGGTGCTCCAATGGGGAGAATGGGAAATTATGGAGGCTTTCCTGGTGCTCCTACGCCTCCTTTCTCAGGAATTTTGTCTTCATTTCCACCTGGGGGTGTTGGGCTACCTGGAGTAGCCCCTCATGTGAATCCTGCATTTTTTGGAAGAGGAATGCCCATGAATGGAATGGGAATGATGCCCACATCAGGTGTTGATGGGCCTAATATGGGGATGTGGTCCGATCCTAATATGGGTGGATGGGCTGGTGAAGAGCATGGTGGTGGCAGAGTTGGGGAGTCTAGTTATGGTGAGGAAGCTGCTTCTGACCATCAATATGGTGAGGCTAGTCATGATAGAGGAGGTGCATGGCCAAATGCCATGAAGGAGAAAGATAGAGGTTCAGAGAGGGACTGGTCTGGATCTTCTGATAGAAGGTATCGGGATGATAGAGATCAGGGATATGAGAGAGATGTGCCTAGAGAGAAGGAGGTGGCTCATGACCATGACTTATCTGAAAGAAGGTATCGTGATGATGTTGATGTTAGTCGAGAACGGGACAGAAATCGTGATAGGTGGTCCAGAATTGATTCACCAATGGCATCCTCTTCTCGTAGATTTCTTTATCTGCTTCTGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000381 GO:0000785 GO:0000790 GO:0000791 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005694 GO:0005719 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006508 GO:0006509 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0031982 GO:0032774 GO:0032991 GO:0033119 GO:0033120 GO:0033619 GO:0034097 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043230 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044530 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048024 GO:0048025 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051259 GO:0051260 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070062 GO:0070555 GO:0070887 GO:0071013 GO:0071310 GO:0071345 GO:0071347 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903311 GO:1903312 GO:1903313 GO:1903506 GO:1903508 GO:1903561 GO:1990837 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
RRM_1

Protein Analysis

651

Amino Acids

68.29

Weight (kDa)

5.23

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 247 - 316 1.7e-14 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 128, 1200
AatII GACGTC 1 cut(s) 126
Acc36I ACCTGC 1 cut(s) 1006
AccB1I GGYRCC 1 cut(s) 710
AciI CCGC 9 cut(s) 43, 62, 194, 212, 276, 414, 714, 940, 1107
AclWI GGATC 4 cut(s) 39, 1319, 1550, 1741
AcoI YGGCCR 4 cut(s) 66, 84, 941, 1682
AcsI RAATTY 1 cut(s) 1404
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 2 cut(s) 863, 1035
AgsI TTSAA 2 cut(s) 437, 509
AjnI CCWGG 3 cut(s) 1375, 1423, 1441
AluBI AGCT 5 cut(s) 529, 641, 728, 781, 1631
AluI AGCT 5 cut(s) 529, 641, 728, 781, 1631
Alw21I GWGCWC 2 cut(s) 1342, 1384
Alw26I GTCTC 1 cut(s) 628
AlwI GGATC 4 cut(s) 39, 1319, 1550, 1741
AlwNI CAGNNNCTG 2 cut(s) 529, 532
AoxI GGCC 8 cut(s) 66, 84, 398, 900, 941, 1058, 1532, 1682
ApaI GGGCCC 2 cut(s) 402, 1062
ApeKI GCWGC 7 cut(s) 411, 526, 529, 532, 596, 599, 1631
ApoI RAATTY 1 cut(s) 1404
Asp700I GAANNNNTTC 2 cut(s) 827, 1900
AspLEI GCGC 1 cut(s) 235
AsuC2I CCSGG 3 cut(s) 264, 693, 1072
AsuHPI GGTGA 9 cut(s) 213, 320, 472, 761, 957, 1592, 1634, 1664, 1896
AvaII GGWCC 8 cut(s) 109, 254, 689, 806, 1193, 1202, 1551, 1890
BaeGI GKGCMC 2 cut(s) 402, 1062
BaeI ACNNNNGTAYC 2 cut(s) 1017, 1050
BalI TGGCCA 1 cut(s) 1684
BanI GGYRCC 1 cut(s) 710
BanII GRGCYC 2 cut(s) 402, 1062
BbsI GAAGAC 1 cut(s) 1404
Bbv12I GWGCWC 2 cut(s) 1342, 1384
BbvI GCAGC 7 cut(s) 423, 516, 519, 538, 583, 586, 1618
BccI CCATC 8 cut(s) 22, 68, 296, 305, 1303, 1523, 1566, 1650
BceAI ACGGC 3 cut(s) 220, 298, 915
BcgI CGANNNNNNTGC 2 cut(s) 356, 390
BciT130I CCWGG 3 cut(s) 1377, 1425, 1443
BcnI CCSGG 3 cut(s) 264, 693, 1072
BcoDI GTCTC 1 cut(s) 628
BfaI CTAG 3 cut(s) 1614, 1659, 1791
BfmI CTRYAG 1 cut(s) 1029
BfuAI ACCTGC 1 cut(s) 1006
BisI GCNGC 9 cut(s) 412, 527, 530, 533, 597, 600, 714, 941, 1632
BlsI GCNGC 9 cut(s) 413, 528, 531, 534, 598, 601, 715, 942, 1633
Bme1390I CCNGG 6 cut(s) 264, 693, 1072, 1377, 1425, 1443
Bme18I GGWCC 8 cut(s) 109, 254, 689, 806, 1193, 1202, 1551, 1890
BmiI GGNNCC 7 cut(s) 399, 400, 401, 712, 1010, 1059, 1060
BmrFI CCNGG 6 cut(s) 264, 693, 1072, 1377, 1425, 1443
BmrI ACTGGG 1 cut(s) 1165
BmsI GCATC 6 cut(s) 763, 906, 971, 1281, 1500, 1922
BmuI ACTGGG 1 cut(s) 1165
BpiI GAAGAC 1 cut(s) 1404
BplI GAGNNNNNCTC 2 cut(s) 41, 73
BpmI CTGGAG 2 cut(s) 803, 1464
BpuEI CTTGAG 2 cut(s) 231, 981
BpuMI CCSGG 3 cut(s) 264, 693, 1072
BsaBI GATNNNNATC 1 cut(s) 1764
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 5 cut(s) 87, 403, 897, 1205, 1424
BsaXI ACNNNNNCTCC 2 cut(s) 776, 806
Bse1I ACTGG 7 cut(s) 298, 1048, 1087, 1108, 1160, 1196, 1730
Bse3DI GCAATG 1 cut(s) 1095
Bse8I GATNNNNATC 1 cut(s) 1764
BseBI CCWGG 3 cut(s) 1377, 1425, 1443
BseDI CCNNGG 5 cut(s) 87, 403, 897, 1205, 1424
BseGI GGATG 8 cut(s) 10, 307, 778, 921, 1551, 1577, 1762, 1913
BseJI GATNNNNATC 1 cut(s) 1764
BseMI GCAATG 1 cut(s) 1095
BseMII CTCAG 4 cut(s) 536, 1187, 1313, 1413
BseNI ACTGG 7 cut(s) 298, 1048, 1087, 1108, 1160, 1196, 1730
BseRI GAGGAG 6 cut(s) 104, 212, 432, 711, 1066, 1686
BseSI GKGCMC 2 cut(s) 402, 1062
BseXI GCAGC 7 cut(s) 423, 516, 519, 538, 583, 586, 1618
BseYI CCCAGC 1 cut(s) 728
BshFI GGCC 8 cut(s) 68, 86, 400, 902, 943, 1060, 1534, 1684
BshNI GGYRCC 1 cut(s) 710
BsiHKAI GWGCWC 2 cut(s) 1342, 1384
BsiSI CCGG 3 cut(s) 263, 692, 1071
BslFI GGGAC 4 cut(s) 304, 745, 1736, 1883
BsmAI GTCTC 1 cut(s) 628
BsmFI GGGAC 4 cut(s) 304, 745, 1736, 1883
BsmI GAATGC 1 cut(s) 1491
BsnI GGCC 8 cut(s) 68, 86, 400, 902, 943, 1060, 1534, 1684
Bsp120I GGGCCC 2 cut(s) 398, 1058
Bsp1286I GDGCHC 4 cut(s) 402, 1062, 1342, 1384
Bsp143I GATC 7 cut(s) 22, 31, 54, 1324, 1555, 1733, 1765
BspACI CCGC 9 cut(s) 43, 62, 194, 212, 276, 414, 714, 940, 1107
BspANI GGCC 8 cut(s) 68, 86, 400, 902, 943, 1060, 1534, 1684
BspCNI CTCAG 4 cut(s) 535, 1186, 1312, 1412
BspHI TCATGA 2 cut(s) 1663, 1810
BspLI GGNNCC 7 cut(s) 399, 400, 401, 712, 1010, 1059, 1060
BspMAI CTGCAG 1 cut(s) 1033
BspMI ACCTGC 1 cut(s) 1006
BspPI GGATC 4 cut(s) 39, 1319, 1550, 1741
BspQI GCTCTTC 1 cut(s) 1578
BspT107I GGYRCC 1 cut(s) 710
BsrDI GCAATG 1 cut(s) 1095
BsrI ACTGG 7 cut(s) 298, 1048, 1087, 1108, 1160, 1196, 1730
BssECI CCNNGG 5 cut(s) 87, 403, 897, 1205, 1424
BssMI GATC 7 cut(s) 22, 31, 54, 1324, 1555, 1733, 1765
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 2 cut(s) 403, 1205
Bst2UI CCWGG 3 cut(s) 1377, 1425, 1443
Bst4CI ACNGT 1 cut(s) 866
Bst6I CTCTTC 3 cut(s) 1474, 1578, 1924
BstACI GRCGYC 1 cut(s) 123
BstAPI GCANNNNNTGC 1 cut(s) 532
BstC8I GCNNGC 1 cut(s) 904
BstDEI CTNAG 4 cut(s) 522, 1173, 1299, 1399
BstDSI CCRYGG 1 cut(s) 897
BstENI CCTNNNNNAGG 1 cut(s) 1398
BstF5I GGATG 8 cut(s) 10, 307, 778, 921, 1551, 1577, 1762, 1913
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 7 cut(s) 25, 34, 57, 1327, 1558, 1736, 1768
BstMAI GTCTC 1 cut(s) 628
BstMBI GATC 7 cut(s) 22, 31, 54, 1324, 1555, 1733, 1765
BstMWI GCNNNNNNNGC 6 cut(s) 59, 282, 532, 541, 1028, 1337
BstNI CCWGG 3 cut(s) 1377, 1425, 1443
BstNSI RCATGY 2 cut(s) 631, 929
BstSCI CCNGG 6 cut(s) 262, 691, 1070, 1375, 1423, 1441
BstSFI CTRYAG 1 cut(s) 1029
BstSLI GKGCMC 2 cut(s) 402, 1062
BstV1I GCAGC 7 cut(s) 423, 516, 519, 538, 583, 586, 1618
BstV2I GAAGAC 1 cut(s) 1404
BstX2I RGATCY 1 cut(s) 1733
BstXI CCANNNNNNTGG 1 cut(s) 1649
BstYI RGATCY 1 cut(s) 1733
BsuRI GGCC 8 cut(s) 68, 86, 400, 902, 943, 1060, 1534, 1684
BtgI CCRYGG 1 cut(s) 897
BtsCI GGATG 8 cut(s) 10, 307, 778, 921, 1551, 1577, 1762, 1913
BtsIMutI CAGTG 1 cut(s) 979
BveI ACCTGC 1 cut(s) 1006
Cac8I GCNNGC 1 cut(s) 904
CaiI CAGNNNCTG 2 cut(s) 529, 532
CciI TCATGA 2 cut(s) 1663, 1810
CfoI GCGC 1 cut(s) 235
Csp6I GTAC 2 cut(s) 862, 1034
CviQI GTAC 2 cut(s) 862, 1034
DdeI CTNAG 4 cut(s) 522, 1173, 1299, 1399
DpnI GATC 7 cut(s) 24, 33, 56, 1326, 1557, 1735, 1767
DpnII GATC 7 cut(s) 22, 31, 54, 1324, 1555, 1733, 1765
DrdI GACNNNNNNGTC 2 cut(s) 128, 1200
DseDI GACNNNNNNGTC 2 cut(s) 128, 1200
EaeI YGGCCR 4 cut(s) 66, 84, 941, 1682
Eam1104I CTCTTC 3 cut(s) 1474, 1578, 1924
EarI CTCTTC 3 cut(s) 1474, 1578, 1924
EciI GGCGGA 1 cut(s) 209
Eco130I CCWWGG 2 cut(s) 403, 1205
Eco24I GRGCYC 2 cut(s) 402, 1062
Eco47I GGWCC 8 cut(s) 109, 254, 689, 806, 1193, 1202, 1551, 1890
EcoNI CCTNNNNNAGG 1 cut(s) 1398
EcoO109I RGGNCCY 4 cut(s) 109, 398, 399, 1058
EcoRII CCWGG 3 cut(s) 1375, 1423, 1441
EcoT14I CCWWGG 2 cut(s) 403, 1205
EcoT38I GRGCYC 2 cut(s) 402, 1062
ErhI CCWWGG 2 cut(s) 403, 1205
FaqI GGGAC 4 cut(s) 304, 745, 1736, 1883
FauI CCCGC 1 cut(s) 1100
Fnu4HI GCNGC 9 cut(s) 412, 527, 530, 533, 597, 600, 714, 941, 1632
FokI GGATG 8 cut(s) 17, 314, 785, 928, 1558, 1584, 1769, 1900
FriOI GRGCYC 2 cut(s) 402, 1062
Fsp4HI GCNGC 9 cut(s) 412, 527, 530, 533, 597, 600, 714, 941, 1632
FspBI CTAG 3 cut(s) 1614, 1659, 1791
GlaI GCGC 1 cut(s) 234
GluI GCNGC 9 cut(s) 412, 527, 530, 533, 597, 600, 714, 941, 1632
GsaI CCCAGC 1 cut(s) 732
GsuI CTGGAG 2 cut(s) 803, 1464
HaeIII GGCC 8 cut(s) 68, 86, 400, 902, 943, 1060, 1534, 1684
HapII CCGG 3 cut(s) 263, 692, 1071
HhaI GCGC 1 cut(s) 235
Hin1I GRCGYC 1 cut(s) 123
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HinfI GANTC 6 cut(s) 218, 242, 346, 1462, 1610, 1901
HpaII CCGG 3 cut(s) 263, 692, 1071
HphI GGTGA 9 cut(s) 213, 320, 472, 761, 957, 1592, 1634, 1664, 1896
Hpy166II GTNNAC 1 cut(s) 765
Hpy188I TCNGA 9 cut(s) 27, 241, 258, 345, 1555, 1639, 1717, 1741, 1828
Hpy188III TCNNGA 9 cut(s) 1401, 1664, 1731, 1754, 1811, 1841, 1862, 1880, 1893
Hpy8I GTNNAC 1 cut(s) 765
Hpy99I CGWCG 4 cut(s) 17, 74, 125, 241
HpyAV CCTTC 9 cut(s) 199, 373, 808, 905, 1221, 1690, 1740, 1792, 1827
HpyCH4III ACNGT 1 cut(s) 866
HpyCH4IV ACGT 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 282, 532, 541, 1028, 1337
HpyF3I CTNAG 4 cut(s) 522, 1173, 1299, 1399
HpySE526I ACGT 1 cut(s) 123
Hsp92I GRCGYC 1 cut(s) 123
HspAI GCGC 1 cut(s) 233
Kzo9I GATC 7 cut(s) 22, 31, 54, 1324, 1555, 1733, 1765
LguI GCTCTTC 1 cut(s) 1578
LmnI GCTCC 3 cut(s) 725, 1345, 1387
Lsp1109I GCAGC 7 cut(s) 423, 516, 519, 538, 583, 586, 1618
LweI GCATC 6 cut(s) 763, 906, 971, 1281, 1500, 1922
MaeI CTAG 3 cut(s) 1614, 1659, 1791
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 4 cut(s) 219, 278, 1091, 1151
MalI GATC 7 cut(s) 24, 33, 56, 1326, 1557, 1735, 1767
MboI GATC 7 cut(s) 22, 31, 54, 1324, 1555, 1733, 1765
MboII GAAGA 6 cut(s) 214, 1404, 1491, 1595, 1728, 1911
MfeI CAATTG 1 cut(s) 539
MflI RGATCY 1 cut(s) 1733
MhlI GDGCHC 4 cut(s) 402, 1062, 1342, 1384
MlsI TGGCCA 1 cut(s) 1684
MluCI AATT 9 cut(s) 437, 539, 584, 889, 1111, 1168, 1360, 1404, 1896
MluNI TGGCCA 1 cut(s) 1684
MlyI GAGTC 2 cut(s) 227, 1619
MmeI TCCRAC 2 cut(s) 219, 631
Mox20I TGGCCA 1 cut(s) 1684
MroXI GAANNNNTTC 2 cut(s) 827, 1900
MscI TGGCCA 1 cut(s) 1684
MseI TTAA 4 cut(s) 882, 933, 978, 1951
MslI CAYNNNNRTG 4 cut(s) 924, 1593, 1647, 1815
Msp20I TGGCCA 1 cut(s) 1684
MspA1I CMGCKG 3 cut(s) 414, 529, 716
MspI CCGG 3 cut(s) 263, 692, 1071
MspR9I CCNGG 6 cut(s) 264, 693, 1072, 1377, 1425, 1443
MunI CAATTG 1 cut(s) 539
Mva1269I GAATGC 1 cut(s) 1491
MvaI CCWGG 3 cut(s) 1377, 1425, 1443
MwoI GCNNNNNNNGC 6 cut(s) 59, 282, 532, 541, 1028, 1337
NciI CCSGG 3 cut(s) 264, 693, 1072
NdeII GATC 7 cut(s) 22, 31, 54, 1324, 1555, 1733, 1765
NlaIV GGNNCC 7 cut(s) 399, 400, 401, 712, 1010, 1059, 1060
NmeAIII GCCGAG 2 cut(s) 38, 112
NmuCI GTSAC 1 cut(s) 219
NspI RCATGY 2 cut(s) 631, 929
PagI TCATGA 2 cut(s) 1663, 1810
PciSI GCTCTTC 1 cut(s) 1578
PctI GAATGC 1 cut(s) 1491
PdmI GAANNNNTTC 2 cut(s) 827, 1900
PfeI GAWTC 4 cut(s) 242, 346, 1462, 1901
PflFI GACNNNGTC 1 cut(s) 17
PfoI TCCNGGA 1 cut(s) 691
PkrI GCNGC 9 cut(s) 413, 528, 531, 534, 598, 601, 715, 942, 1633
PleI GAGTC 2 cut(s) 226, 1618
PpsI GAGTC 2 cut(s) 226, 1618
PpuMI RGGWCCY 1 cut(s) 109
Psp5II RGGWCCY 1 cut(s) 109
Psp6I CCWGG 3 cut(s) 1375, 1423, 1441
PspFI CCCAGC 1 cut(s) 728
PspGI CCWGG 3 cut(s) 1375, 1423, 1441
PspN4I GGNNCC 7 cut(s) 399, 400, 401, 712, 1010, 1059, 1060
PspOMI GGGCCC 2 cut(s) 398, 1058
PspPPI RGGWCCY 1 cut(s) 109
PstI CTGCAG 1 cut(s) 1033
PstNI CAGNNNCTG 2 cut(s) 529, 532
PsuI RGATCY 1 cut(s) 1733
PsyI GACNNNGTC 1 cut(s) 17
PvuII CAGCTG 1 cut(s) 529
RsaI GTAC 2 cut(s) 863, 1035
RsaNI GTAC 2 cut(s) 862, 1034
RseI CAYNNNNRTG 4 cut(s) 924, 1593, 1647, 1815
SapI GCTCTTC 1 cut(s) 1578
SaqAI TTAA 4 cut(s) 882, 933, 978, 1951
SatI GCNGC 9 cut(s) 412, 527, 530, 533, 597, 600, 714, 941, 1632
Sau3AI GATC 7 cut(s) 22, 31, 54, 1324, 1555, 1733, 1765
SchI GAGTC 2 cut(s) 227, 1619
ScrFI CCNGG 6 cut(s) 264, 693, 1072, 1377, 1425, 1443
SduI GDGCHC 4 cut(s) 402, 1062, 1342, 1384
SfaNI GCATC 6 cut(s) 763, 906, 971, 1281, 1500, 1922
SfcI CTRYAG 1 cut(s) 1029
SinI GGWCC 8 cut(s) 109, 254, 689, 806, 1193, 1202, 1551, 1890
SmiMI CAYNNNNRTG 4 cut(s) 924, 1593, 1647, 1815
SmlI CTYRAG 2 cut(s) 246, 996
SmoI CTYRAG 2 cut(s) 246, 996
Sse9I AATT 9 cut(s) 437, 539, 584, 889, 1111, 1168, 1360, 1404, 1896
SsiI CCGC 9 cut(s) 43, 62, 194, 212, 276, 414, 714, 940, 1107
SspI AATATT 1 cut(s) 738
SspMI CTAG 3 cut(s) 1614, 1659, 1791
StyD4I CCNGG 6 cut(s) 262, 691, 1070, 1375, 1423, 1441
StyI CCWWGG 2 cut(s) 403, 1205
TaaI ACNGT 1 cut(s) 866
TaiI ACGT 1 cut(s) 126
TaqI TCGA 3 cut(s) 21, 831, 1861
TasI AATT 9 cut(s) 437, 539, 584, 889, 1111, 1168, 1360, 1404, 1896
TauI GCSGC 2 cut(s) 716, 943
TfiI GAWTC 4 cut(s) 242, 346, 1462, 1901
Tru1I TTAA 4 cut(s) 882, 933, 978, 1951
Tru9I TTAA 4 cut(s) 882, 933, 978, 1951
TscAI CASTG 1 cut(s) 979
TseFI GTSAC 1 cut(s) 219
TseI GCWGC 7 cut(s) 411, 526, 529, 532, 596, 599, 1631
Tsp45I GTSAC 1 cut(s) 219
TspDTI ATGAA 5 cut(s) 21, 680, 1404, 1508, 1709
TspGWI ACGGA 1 cut(s) 785
TspRI CASTG 1 cut(s) 979
Tth111I GACNNNGTC 1 cut(s) 17
VpaK11BI GGWCC 8 cut(s) 109, 254, 689, 806, 1193, 1202, 1551, 1890
XagI CCTNNNNNAGG 1 cut(s) 1398
XapI RAATTY 1 cut(s) 1404
XceI RCATGY 2 cut(s) 631, 929
XcmI CCANNNNNNNNNTGG 1 cut(s) 1498
XmnI GAANNNNTTC 2 cut(s) 827, 1900
XspI CTAG 3 cut(s) 1614, 1659, 1791
ZraI GACGTC 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.