Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006731

Physical Location & Seq

Genomic Coordinates Reverse (-)

32171266 .. 32175567

Gene Structure 4302 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0281600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGATGCCTTCGGCTCAAGATCCGTTCTATGTTGTGAAAGAGGAGATTCAAGAATCTATCGATAAGCTGCAGTCTTCTTTTCACCAATGGGAACGTATTTCATCTAACGGTGGACAACAACTACAACTCACGAAGGAGCTGCTTGCCAATTGTGGAAGCATCGAGTGGCAGGTAGATGAACTGGACAAAGCAATATCTGTAGCGGCTAGAGATCCCAGTTTTTATGGTATTGATGAAGTGGAACTTGAAAAGCGAAGGAGATGGACAAGCACTGCTCGTGCTCAGGTAGGTGCGGTAAAAAAAGCAGTGGAAGCTGGAAAGGAGTCCACTGGAACTAGCGCAGCTGGAATGCGGCGGGAACTAATGAGGCTGGCCAATTCTCAGGAGACAGACAGATCCAACCAATATGCTGCACACCGTAACGATGATTTCATAACATCAGAATCAGATAGACAGTTGCTTCTCATAAAGCAACAAGATGAGGAATTGGACGAACTCAGTGCCAGTGTGGAGAGAATTGGAGGTGTCGGACTTACCATACATGAAGAGCTCCTGGCACAGGACAAGATTGTAGAGGAGTTGGGTATGGAAATGGACAGTACGTCAAACCGGCTTGATTTTGTTCAGAAAAAGGTGGCAACAGTGATGAAGAAGGCTGGTGTAAAAGGCCAGATTATGATGATACTCTTTTTGGTGGTTTTGTTCATCATTCTTTTTGTTTTGGTCTTCCTCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000381 GO:0000785 GO:0000790 GO:0000791 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005694 GO:0005719 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006508 GO:0006509 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0031982 GO:0032774 GO:0032991 GO:0033119 GO:0033120 GO:0033619 GO:0034097 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043230 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044530 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048024 GO:0048025 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051259 GO:0051260 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070062 GO:0070555 GO:0070887 GO:0071013 GO:0071310 GO:0071345 GO:0071347 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903311 GO:1903312 GO:1903313 GO:1903506 GO:1903508 GO:1903561 GO:1990837 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

245

Amino Acids

27.59

Weight (kDa)

4.97

Isoelectric Point (pI)

47.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STX6_10_61_N	PF09177	7 - 100	7.1e-27	Syntaxin 6/10/61, N-terminal
SNARE	PF05739	190 - 241	2.1e-07	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55670 AT5G55670
fragaria_vesca	FvH4_3g29340 FvH4_3g29340 FvH4_3g29340
malus_domestica	MD03G1183300.v1.1 MD11G1200300.v1.1
prunus_persica	Prupe.4G242800_v2.0.a1 Prupe.4G242800_v2.0.a1 Prupe.4G242800_v2.0.a1
pyrus_communis	pycom03g13690 pycom11g17270
rosa_chinensis	RchiOBHm_Chr5g0053701
rosa_laevigata	RLG00000034897
rosa_multiflora	Rmu_co8359745.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026880
rosa_rugosa	Rorug05G0281400 Rorug05G0281500 Rorug05G0281600 Rorug05G0281600 Rorug05G0281700
rosa_samantha	Rh5AG352600 Rh5BG364300 Rh5CG389200 Rh5DG379100
rosa_wichuraiana	Rw5G033310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	160
AciI	CCGC	4 cut(s)	203, 293, 352, 355
AclWI	GGATC	3 cut(s)	14, 206, 390
AcoI	YGGCCR	1 cut(s)	372
AfaI	GTAC	1 cut(s)	601
AfiI	CCNNNNNNNGG	1 cut(s)	559
AgsI	TTSAA	2 cut(s)	50, 248
AhdI	GACNNNNNGTC	1 cut(s)	601
AjnI	CCWGG	1 cut(s)	552
AluBI	AGCT	5 cut(s)	67, 139, 314, 344, 550
AluI	AGCT	5 cut(s)	67, 139, 314, 344, 550
Alw21I	GWGCWC	2 cut(s)	283, 552
Alw26I	GTCTC	1 cut(s)	380
AlwI	GGATC	3 cut(s)	14, 206, 390
AoxI	GGCC	2 cut(s)	372, 667
ApeKI	GCWGC	4 cut(s)	67, 139, 341, 410
AspLEI	GCGC	1 cut(s)	341
AsuHPI	GGTGA	2 cut(s)	74, 724
BalI	TGGCCA	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	552
BauI	CACGAG	1 cut(s)	276
BbsI	GAAGAC	2 cut(s)	66, 718
Bbv12I	GWGCWC	2 cut(s)	283, 552
BbvI	GCAGC	4 cut(s)	54, 126, 353, 397
BccI	CCATC	1 cut(s)	255
BcgI	CGANNNNNNTGC	4 cut(s)	121, 155, 482, 516
BciT130I	CCWGG	1 cut(s)	554
BcoDI	GTCTC	1 cut(s)	380
BfaI	CTAG	3 cut(s)	207, 336, 736
BfmI	CTRYAG	2 cut(s)	68, 198
BfuAI	ACCTGC	1 cut(s)	160
BisI	GCNGC	6 cut(s)	68, 140, 204, 342, 353, 411
BlsI	GCNGC	6 cut(s)	69, 141, 205, 343, 354, 412
Bme1390I	CCNGG	1 cut(s)	554
BmeRI	GACNNNNNGTC	1 cut(s)	601
BmrFI	CCNGG	1 cut(s)	554
BmrI	ACTGGG	1 cut(s)	210
BmsI	GCATC	1 cut(s)	168
BmuI	ACTGGG	1 cut(s)	210
BpiI	GAAGAC	2 cut(s)	66, 718
Bpu10I	CCTNAGC	1 cut(s)	282
Bsa29I	ATCGAT	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	559
Bse118I	RCCGGY	1 cut(s)	609
Bse1I	ACTGG	4 cut(s)	186, 216, 334, 504
BseBI	CCWGG	1 cut(s)	554
BseCI	ATCGAT	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	559
BseMII	CTCAG	3 cut(s)	296, 395, 511
BseNI	ACTGG	4 cut(s)	186, 216, 334, 504
BseRI	GAGGAG	2 cut(s)	56, 590
BseXI	GCAGC	4 cut(s)	54, 126, 353, 397
BsgI	GTGCAG	1 cut(s)	396
BshFI	GGCC	2 cut(s)	374, 669
BshVI	ATCGAT	1 cut(s)	60
BsiHKAI	GWGCWC	2 cut(s)	283, 552
BsiSI	CCGG	1 cut(s)	610
BslI	CCNNNNNNNGG	1 cut(s)	559
BsmAI	GTCTC	1 cut(s)	380
BsmI	GAATGC	1 cut(s)	354
BsnI	GGCC	2 cut(s)	374, 669
Bsp1286I	GDGCHC	2 cut(s)	283, 552
Bsp143I	GATC	3 cut(s)	19, 211, 395
BspACI	CCGC	4 cut(s)	203, 293, 352, 355
BspANI	GGCC	2 cut(s)	374, 669
BspCNI	CTCAG	3 cut(s)	295, 394, 510
BspDI	ATCGAT	1 cut(s)	60
BspMAI	CTGCAG	1 cut(s)	72
BspMI	ACCTGC	1 cut(s)	160
BspPI	GGATC	3 cut(s)	14, 206, 390
BspQI	GCTCTTC	1 cut(s)	540
BsrFI	RCCGGY	1 cut(s)	609
BsrI	ACTGG	4 cut(s)	186, 216, 334, 504
BssAI	RCCGGY	1 cut(s)	609
BssMI	GATC	3 cut(s)	19, 211, 395
BssSI	CACGAG	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	554
Bst4CI	ACNGT	5 cut(s)	110, 419, 456, 599, 643
Bst6I	CTCTTC	1 cut(s)	540
BstC8I	GCNNGC	2 cut(s)	144, 372
BstDEI	CTNAG	3 cut(s)	282, 381, 497
BstENI	CCTNNNNNAGG	1 cut(s)	557
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	3 cut(s)	22, 214, 398
BstMAI	GTCTC	1 cut(s)	380
BstMBI	GATC	3 cut(s)	19, 211, 395
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstNI	CCWGG	1 cut(s)	554
BstSCI	CCNGG	1 cut(s)	552
BstSFI	CTRYAG	2 cut(s)	68, 198
BstV1I	GCAGC	4 cut(s)	54, 126, 353, 397
BstV2I	GAAGAC	2 cut(s)	66, 718
BstX2I	RGATCY	3 cut(s)	19, 211, 395
BstYI	RGATCY	3 cut(s)	19, 211, 395
Bsu15I	ATCGAT	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	374, 669
BsuTUI	ATCGAT	1 cut(s)	60
BtsI	GCAGTG	2 cut(s)	270, 312
BtsIMutI	CAGTG	6 cut(s)	270, 312, 327, 505, 511, 648
BveI	ACCTGC	1 cut(s)	160
Cac8I	GCNNGC	2 cut(s)	144, 372
CfoI	GCGC	1 cut(s)	341
Cfr10I	RCCGGY	1 cut(s)	609
ClaI	ATCGAT	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	600
CviAII	CATG	1 cut(s)	542
CviQI	GTAC	1 cut(s)	600
DdeI	CTNAG	3 cut(s)	282, 381, 497
DpnI	GATC	3 cut(s)	21, 213, 397
DpnII	GATC	3 cut(s)	19, 211, 395
DriI	GACNNNNNGTC	1 cut(s)	601
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	1 cut(s)	540
Eam1105I	GACNNNNNGTC	1 cut(s)	601
EarI	CTCTTC	1 cut(s)	540
Ecl136II	GAGCTC	1 cut(s)	550
Eco24I	GRGCYC	1 cut(s)	552
Eco53kI	GAGCTC	1 cut(s)	550
EcoICRI	GAGCTC	1 cut(s)	550
EcoNI	CCTNNNNNAGG	1 cut(s)	557
EcoRII	CCWGG	1 cut(s)	552
EcoT38I	GRGCYC	1 cut(s)	552
FaeI	CATG	1 cut(s)	545
FaiI	YATR	9 cut(s)	30, 225, 408, 434, 467, 539, 543, 587, 677
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FatI	CATG	1 cut(s)	541
FauI	CCCGC	1 cut(s)	348
Fnu4HI	GCNGC	6 cut(s)	68, 140, 204, 342, 353, 411
FriOI	GRGCYC	1 cut(s)	552
Fsp4HI	GCNGC	6 cut(s)	68, 140, 204, 342, 353, 411
FspBI	CTAG	3 cut(s)	207, 336, 736
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	6 cut(s)	68, 140, 204, 342, 353, 411
HaeIII	GGCC	2 cut(s)	374, 669
HapII	CCGG	1 cut(s)	610
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	1 cut(s)	545
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HinfI	GANTC	4 cut(s)	46, 53, 323, 443
HpaII	CCGG	1 cut(s)	610
HphI	GGTGA	2 cut(s)	74, 724
Hpy166II	GTNNAC	2 cut(s)	113, 327
Hpy188I	TCNGA	4 cut(s)	442, 448, 530, 627
Hpy188III	TCNNGA	4 cut(s)	17, 50, 130, 383
Hpy8I	GTNNAC	2 cut(s)	113, 327
HpyAV	CCTTC	4 cut(s)	18, 127, 249, 646
HpyCH4III	ACNGT	5 cut(s)	110, 419, 456, 599, 643
HpyCH4IV	ACGT	2 cut(s)	94, 602
HpyCH4V	TGCA	2 cut(s)	70, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	3 cut(s)	282, 381, 497
HpySE526I	ACGT	2 cut(s)	94, 602
Hsp92II	CATG	1 cut(s)	545
HspAI	GCGC	1 cut(s)	339
Kzo9I	GATC	3 cut(s)	19, 211, 395
LguI	GCTCTTC	1 cut(s)	540
LmnI	GCTCC	2 cut(s)	136, 555
Lsp1109I	GCAGC	4 cut(s)	54, 126, 353, 397
LweI	GCATC	1 cut(s)	168
MaeI	CTAG	3 cut(s)	207, 336, 736
MaeII	ACGT	2 cut(s)	94, 602
MaeIII	GTNAC	1 cut(s)	419
MalI	GATC	3 cut(s)	21, 213, 397
MboI	GATC	3 cut(s)	19, 211, 395
MboII	GAAGA	4 cut(s)	66, 557, 661, 718
MfeI	CAATTG	1 cut(s)	148
MflI	RGATCY	3 cut(s)	19, 211, 395
MhlI	GDGCHC	2 cut(s)	283, 552
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	4 cut(s)	148, 376, 485, 516
MluNI	TGGCCA	1 cut(s)	374
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	2 cut(s)	423, 508
MnlI	CCTC	5 cut(s)	34, 360, 475, 515, 568
Mox20I	TGGCCA	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	374
Msp20I	TGGCCA	1 cut(s)	374
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	1 cut(s)	610
MspR9I	CCNGG	1 cut(s)	554
MunI	CAATTG	1 cut(s)	148
Mva1269I	GAATGC	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	554
MwoI	GCNNNNNNNGC	1 cut(s)	311
NdeII	GATC	3 cut(s)	19, 211, 395
NlaIII	CATG	1 cut(s)	545
PciSI	GCTCTTC	1 cut(s)	540
PctI	GAATGC	1 cut(s)	354
PfeI	GAWTC	3 cut(s)	46, 53, 443
PkrI	GCNGC	6 cut(s)	69, 141, 205, 343, 354, 412
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
Psp124BI	GAGCTC	1 cut(s)	552
Psp6I	CCWGG	1 cut(s)	552
PspGI	CCWGG	1 cut(s)	552
PstI	CTGCAG	1 cut(s)	72
PsuI	RGATCY	3 cut(s)	19, 211, 395
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	1 cut(s)	601
RsaNI	GTAC	1 cut(s)	600
SacI	GAGCTC	1 cut(s)	552
SapI	GCTCTTC	1 cut(s)	540
SatI	GCNGC	6 cut(s)	68, 140, 204, 342, 353, 411
Sau3AI	GATC	3 cut(s)	19, 211, 395
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	554
SduI	GDGCHC	2 cut(s)	283, 552
SfaNI	GCATC	1 cut(s)	168
SfcI	CTRYAG	2 cut(s)	68, 198
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
Sse9I	AATT	4 cut(s)	148, 376, 485, 516
SsiI	CCGC	4 cut(s)	203, 293, 352, 355
SspMI	CTAG	3 cut(s)	207, 336, 736
SstI	GAGCTC	1 cut(s)	552
StyD4I	CCNGG	1 cut(s)	552
TaaI	ACNGT	5 cut(s)	110, 419, 456, 599, 643
TaiI	ACGT	2 cut(s)	97, 605
TaqI	TCGA	2 cut(s)	60, 162
TasI	AATT	4 cut(s)	148, 376, 485, 516
TauI	GCSGC	2 cut(s)	206, 355
TfiI	GAWTC	3 cut(s)	46, 53, 443
TscAI	CASTG	6 cut(s)	277, 312, 334, 505, 511, 648
TseI	GCWGC	4 cut(s)	67, 139, 341, 410
TspDTI	ATGAA	7 cut(s)	90, 192, 249, 421, 558, 662, 694
TspGWI	ACGGA	1 cut(s)	12
TspRI	CASTG	6 cut(s)	277, 312, 334, 505, 511, 648
XagI	CCTNNNNNAGG	1 cut(s)	557
XspI	CTAG	3 cut(s)	207, 336, 736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.