Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006731

Physical Location & Seq

Genomic Coordinates Forward (+)

32169220 .. 32170660

Gene Structure 1441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0281500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGTTCACTGTTGACCATAGGCGTGATAAATATCTCTCTCTTATTCGTCATTGGATTCGCACTGCCATTGGGCGTAATGTTATTGAACTTGACCTGTATATCGAGTTATTTTCAGAACGACATGATTTTGTGTTACCTAAGAGCCTTTTTGTGTGTAAAACACTGGAGGTTTTGAAGATTGGGCCAAATTTTATTATCAATGATCTTCCCCAGTCAGAGAACTTCTTCCCAAGCCTCAAGTTTCTTGCTGTTTTTGTTCACCATCCTGACAATGGCTCAATGGAAAAGCTTTTTCCTCACTTTCCACTACTTGAAGATTTGGCTATAGATGGAATCCTCGGGCAAAAGGAAGATTTGAAAGTCAACATCTCTGCACCTAAACTGAAGACGTTAAGAATATATTTGCAGGTTGACAGATGTGATTATCATGAGCACAATTTTTACATTAGAGCTCCAAATCTTGAAAATCTTGATCTCATGCAAGATAATTTTATAAATTTTACTTTGGAAACTCCAAACTCCCTAGTCAAAGCTGAAGTTGATGTCAGAGGGCGTTATGCAAAAGCAAAGCCTGATCATACAATTGCACTTCCTGAAGGAATTTCCAATGTCAAGTACCTGTCTCTCAGAGATAATACTTTCGAGGGTTGTCCTCTGCCTACTTTTAATAACTTGAACCATTTGAAGCTGTGTCTTTGTGATTGCAATTATGGGAGATTGCTAACAGAGTCGCTCAAGACTTTTCCTAATCTGGAACATCTTGACATTGAATATAGGTCCCTAAGTCGTGAAGAACTTTATCTACCGGAGTTTGTGCCGTTTTGTTTGTTGTCACGTCTCAAGACTATCTGTATAAGGGGATTTGCGGGACATCAAGTTGAGATGGAAGCGGCCAAGTACTTGTTAAAGAATGGTAGACTTCTGAAAAAGATGACAATTGATACTTATTACCTGCACAACAAAATGGAGGTGTTGTATAAGGAATTTTTGATGCTTCAAAGCGGTTCACTGAATTGTCAAGTTGAATTTGTCAAAATGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000381 GO:0000785 GO:0000790 GO:0000791 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005694 GO:0005719 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006508 GO:0006509 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0031982 GO:0032774 GO:0032991 GO:0033119 GO:0033120 GO:0033619 GO:0034097 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043230 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044530 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048024 GO:0048025 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051259 GO:0051260 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070062 GO:0070555 GO:0070887 GO:0071013 GO:0071310 GO:0071345 GO:0071347 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903311 GO:1903312 GO:1903313 GO:1903506 GO:1903508 GO:1903561 GO:1990837 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

347

Amino Acids

40.54

Weight (kDa)

6.89

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	8 - 322	7.4e-08	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	16 - 164	1.3e-11	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	269 - 313	6.2e-16	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55670 AT5G55670
fragaria_vesca	FvH4_3g29340 FvH4_3g29340 FvH4_3g29340
malus_domestica	MD03G1183300.v1.1 MD11G1200300.v1.1
prunus_persica	Prupe.4G242800_v2.0.a1 Prupe.4G242800_v2.0.a1 Prupe.4G242800_v2.0.a1
pyrus_communis	pycom03g13690 pycom11g17270
rosa_chinensis	RchiOBHm_Chr5g0053701
rosa_laevigata	RLG00000034897
rosa_multiflora	Rmu_co8359745.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026880
rosa_rugosa	Rorug05G0281400 Rorug05G0281500 Rorug05G0281600 Rorug05G0281600 Rorug05G0281700
rosa_samantha	Rh5AG352600 Rh5BG364300 Rh5CG389200 Rh5DG379100
rosa_wichuraiana	Rw5G033310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	494
Acc36I	ACCTGC	2 cut(s)	397, 960
AccI	GTMKAC	1 cut(s)	916
AciI	CCGC	3 cut(s)	866, 890, 1002
AcoI	YGGCCR	1 cut(s)	891
AcsI	RAATTY	5 cut(s)	187, 496, 600, 983, 1025
AcuI	CTGAAG	3 cut(s)	404, 555, 615
AfaI	GTAC	2 cut(s)	617, 899
AfiI	CCNNNNNNNGG	1 cut(s)	272
AjiI	CACGTC	1 cut(s)	836
AluBI	AGCT	4 cut(s)	289, 452, 533, 688
AluI	AGCT	4 cut(s)	289, 452, 533, 688
Alw21I	GWGCWC	2 cut(s)	435, 454
Alw26I	GTCTC	2 cut(s)	627, 842
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	2 cut(s)	182, 891
ApoI	RAATTY	5 cut(s)	187, 496, 600, 983, 1025
Asp700I	GAANNNNTTC	1 cut(s)	224
AspS9I	GGNCC	2 cut(s)	182, 777
AsuHPI	GGTGA	1 cut(s)	251
AvaI	CYCGRG	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	777
BanII	GRGCYC	1 cut(s)	454
BbsI	GAAGAC	1 cut(s)	392
Bbv12I	GWGCWC	2 cut(s)	435, 454
BccI	CCATC	3 cut(s)	270, 323, 877
BceAI	ACGGC	1 cut(s)	802
BclI	TGATCA	1 cut(s)	574
BcoDI	GTCTC	2 cut(s)	627, 842
BfaI	CTAG	1 cut(s)	524
BfmI	CTRYAG	1 cut(s)	324
BfuAI	ACCTGC	2 cut(s)	397, 960
BisI	GCNGC	1 cut(s)	891
BlsI	GCNGC	1 cut(s)	892
BmcAI	AGTACT	1 cut(s)	899
Bme18I	GGWCC	1 cut(s)	777
BmeT110I	CYCGRG	1 cut(s)	338
BmgBI	CACGTC	1 cut(s)	836
BmgT120I	GGNCC	2 cut(s)	182, 777
BmiI	GGNNCC	1 cut(s)	779
BmrI	ACTGGG	1 cut(s)	205
BmsI	GCATC	1 cut(s)	981
BmuI	ACTGGG	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	392
BpmI	CTGGAG	1 cut(s)	185
BpuEI	CTTGAG	3 cut(s)	221, 719, 824
BsaBI	GATNNNNATC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	337
BsaWI	WCCGGW	1 cut(s)	805
BsaXI	ACNNNNNCTCC	2 cut(s)	959, 989
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	2 cut(s)	168, 211
Bse8I	GATNNNNATC	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	337
BseGI	GGATG	1 cut(s)	262
BseJI	GATNNNNATC	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	640
BseNI	ACTGG	2 cut(s)	168, 211
BsgI	GTGCAG	2 cut(s)	357, 938
BshFI	GGCC	2 cut(s)	184, 893
BsiHKAI	GWGCWC	2 cut(s)	435, 454
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	806
BslFI	GGGAC	2 cut(s)	763, 882
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	2 cut(s)	627, 842
BsmBI	CGTCTC	1 cut(s)	842
BsmFI	GGGAC	2 cut(s)	763, 882
BsnI	GGCC	2 cut(s)	184, 893
BsoBI	CYCGRG	1 cut(s)	338
Bsp1286I	GDGCHC	2 cut(s)	435, 454
Bsp143I	GATC	3 cut(s)	202, 472, 574
BspACI	CCGC	3 cut(s)	866, 890, 1002
BspANI	GGCC	2 cut(s)	184, 893
BspCNI	CTCAG	1 cut(s)	639
BspHI	TCATGA	1 cut(s)	427
BspLI	GGNNCC	1 cut(s)	779
BspMI	ACCTGC	2 cut(s)	397, 960
BsrI	ACTGG	2 cut(s)	168, 211
BssECI	CCNNGG	1 cut(s)	337
BssMI	GATC	3 cut(s)	202, 472, 574
Bst4CI	ACNGT	1 cut(s)	10
BstDEI	CTNAG	3 cut(s)	138, 626, 782
BstF5I	GGATG	1 cut(s)	262
BstKTI	GATC	3 cut(s)	205, 475, 577
BstMAI	GTCTC	2 cut(s)	627, 842
BstMBI	GATC	3 cut(s)	202, 472, 574
BstSFI	CTRYAG	1 cut(s)	324
BstV2I	GAAGAC	1 cut(s)	392
BsuRI	GGCC	2 cut(s)	184, 893
BtrI	CACGTC	1 cut(s)	836
BtsCI	GGATG	1 cut(s)	262
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	4 cut(s)	6, 60, 161, 1007
BveI	ACCTGC	2 cut(s)	397, 960
CciI	TCATGA	1 cut(s)	427
Cfr13I	GGNCC	2 cut(s)	182, 777
Csp6I	GTAC	2 cut(s)	616, 898
CviAII	CATG	3 cut(s)	122, 428, 478
CviQI	GTAC	2 cut(s)	616, 898
DdeI	CTNAG	3 cut(s)	138, 626, 782
DpnI	GATC	3 cut(s)	204, 474, 576
DpnII	GATC	3 cut(s)	202, 472, 574
EaeI	YGGCCR	1 cut(s)	891
Ecl136II	GAGCTC	1 cut(s)	452
Eco24I	GRGCYC	1 cut(s)	454
Eco47I	GGWCC	1 cut(s)	777
Eco53kI	GAGCTC	1 cut(s)	452
Eco57I	CTGAAG	3 cut(s)	404, 555, 615
Eco88I	CYCGRG	1 cut(s)	338
EcoICRI	GAGCTC	1 cut(s)	452
EcoO109I	RGGNCCY	1 cut(s)	777
EcoT38I	GRGCYC	1 cut(s)	454
Esp3I	CGTCTC	1 cut(s)	842
FaeI	CATG	3 cut(s)	125, 431, 481
FaqI	GGGAC	2 cut(s)	763, 882
FatI	CATG	3 cut(s)	121, 427, 477
FauI	CCCGC	1 cut(s)	859
FbaI	TGATCA	1 cut(s)	574
FblI	GTMKAC	1 cut(s)	916
Fnu4HI	GCNGC	1 cut(s)	891
FokI	GGATG	1 cut(s)	249
FriOI	GRGCYC	1 cut(s)	454
Fsp4HI	GCNGC	1 cut(s)	891
FspBI	CTAG	1 cut(s)	524
GluI	GCNGC	1 cut(s)	891
GsuI	CTGGAG	1 cut(s)	185
HaeIII	GGCC	2 cut(s)	184, 893
HapII	CCGG	1 cut(s)	806
Hin1II	CATG	3 cut(s)	125, 431, 481
HincII	GTYRAC	3 cut(s)	13, 364, 412
HindII	GTYRAC	3 cut(s)	13, 364, 412
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	3 cut(s)	55, 333, 728
HpaII	CCGG	1 cut(s)	806
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	7 cut(s)	6, 13, 259, 364, 412, 917, 1007
Hpy188I	TCNGA	5 cut(s)	115, 217, 548, 629, 924
Hpy8I	GTNNAC	7 cut(s)	6, 13, 259, 364, 412, 917, 1007
HpyAV	CCTTC	1 cut(s)	590
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4IV	ACGT	2 cut(s)	389, 835
HpyCH4V	TGCA	7 cut(s)	374, 406, 481, 560, 587, 705, 955
HpyF3I	CTNAG	3 cut(s)	138, 626, 782
HpySE526I	ACGT	2 cut(s)	389, 835
Hsp92II	CATG	3 cut(s)	125, 431, 481
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	3 cut(s)	202, 472, 574
LmnI	GCTCC	1 cut(s)	457
LweI	GCATC	1 cut(s)	981
MaeI	CTAG	1 cut(s)	524
MaeII	ACGT	2 cut(s)	389, 835
MaeIII	GTNAC	2 cut(s)	132, 831
MalI	GATC	3 cut(s)	204, 474, 576
MboI	GATC	3 cut(s)	202, 472, 574
MboII	GAAGA	7 cut(s)	187, 197, 217, 326, 362, 397, 803
MfeI	CAATTG	2 cut(s)	582, 936
MhlI	GDGCHC	2 cut(s)	435, 454
MlyI	GAGTC	1 cut(s)	737
MnlI	CCTC	8 cut(s)	160, 245, 306, 347, 542, 637, 663, 961
MroXI	GAANNNNTTC	1 cut(s)	224
MseI	TTAA	3 cut(s)	392, 666, 905
MslI	CAYNNNNRTG	1 cut(s)	21
MspI	CCGG	1 cut(s)	806
MunI	CAATTG	2 cut(s)	582, 936
NdeII	GATC	3 cut(s)	202, 472, 574
NlaIII	CATG	3 cut(s)	125, 431, 481
NlaIV	GGNNCC	1 cut(s)	779
NmuCI	GTSAC	1 cut(s)	831
PagI	TCATGA	1 cut(s)	427
PdmI	GAANNNNTTC	1 cut(s)	224
PfeI	GAWTC	2 cut(s)	55, 333
PkrI	GCNGC	1 cut(s)	892
PleI	GAGTC	1 cut(s)	736
PpsI	GAGTC	1 cut(s)	736
PpuMI	RGGWCCY	1 cut(s)	777
PsiI	TTATAA	1 cut(s)	494
Psp124BI	GAGCTC	1 cut(s)	454
Psp5II	RGGWCCY	1 cut(s)	777
PspN4I	GGNNCC	1 cut(s)	779
PspPI	GGNCC	2 cut(s)	182, 777
PspPPI	RGGWCCY	1 cut(s)	777
PsrI	GAACNNNNNNTAC	2 cut(s)	786, 818
RsaI	GTAC	2 cut(s)	617, 899
RsaNI	GTAC	2 cut(s)	616, 898
RseI	CAYNNNNRTG	1 cut(s)	21
SacI	GAGCTC	1 cut(s)	454
SaqAI	TTAA	3 cut(s)	392, 666, 905
SatI	GCNGC	1 cut(s)	891
Sau3AI	GATC	3 cut(s)	202, 472, 574
Sau96I	GGNCC	2 cut(s)	182, 777
ScaI	AGTACT	1 cut(s)	899
SchI	GAGTC	1 cut(s)	737
SduI	GDGCHC	2 cut(s)	435, 454
SfaNI	GCATC	1 cut(s)	981
SfcI	CTRYAG	1 cut(s)	324
SinI	GGWCC	1 cut(s)	777
SmiMI	CAYNNNNRTG	1 cut(s)	21
SmlI	CTYRAG	3 cut(s)	236, 734, 839
SmoI	CTYRAG	3 cut(s)	236, 734, 839
SsiI	CCGC	3 cut(s)	866, 890, 1002
SspMI	CTAG	1 cut(s)	524
SstI	GAGCTC	1 cut(s)	454
TaaI	ACNGT	1 cut(s)	10
TaiI	ACGT	2 cut(s)	392, 838
TaqI	TCGA	2 cut(s)	102, 642
TatI	WGTACW	1 cut(s)	897
TauI	GCSGC	1 cut(s)	893
TfiI	GAWTC	2 cut(s)	55, 333
Tru1I	TTAA	3 cut(s)	392, 666, 905
Tru9I	TTAA	3 cut(s)	392, 666, 905
TscAI	CASTG	4 cut(s)	13, 67, 168, 1014
TseFI	GTSAC	1 cut(s)	831
Tsp45I	GTSAC	1 cut(s)	831
TspRI	CASTG	4 cut(s)	13, 67, 168, 1014
VpaK11BI	GGWCC	1 cut(s)	777
XapI	RAATTY	5 cut(s)	187, 496, 600, 983, 1025
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269
XmiI	GTMKAC	1 cut(s)	916
XmnI	GAANNNNTTC	1 cut(s)	224
XspI	CTAG	1 cut(s)	524
ZrmI	AGTACT	1 cut(s)	899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.