cleavage and polyadenylation specificity factor subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G55670 AT5G55670 |
| fragaria_vesca | FvH4_3g29340 FvH4_3g29340 FvH4_3g29340 |
| malus_domestica | MD03G1183300.v1.1 MD11G1200300.v1.1 |
| prunus_persica | Prupe.4G242800_v2.0.a1 Prupe.4G242800_v2.0.a1 Prupe.4G242800_v2.0.a1 |
| pyrus_communis | pycom03g13690 pycom11g17270 |
| rosa_chinensis | RchiOBHm_Chr5g0053701 |
| rosa_laevigata | RLG00000034897 |
| rosa_multiflora | Rmu_co8359745.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00026880 |
| rosa_rugosa | Rorug05G0281400 Rorug05G0281500 Rorug05G0281600 Rorug05G0281600 Rorug05G0281700 |
| rosa_samantha | Rh5AG352600 Rh5BG364300 Rh5CG389200 Rh5DG379100 |
| rosa_wichuraiana | Rw5G033310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 254 |
| AciI | CCGC | 2 cut(s) | 224, 261 |
| AcoI | YGGCCR | 1 cut(s) | 51 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 40, 254 |
| Aor13HI | TCCGGA | 1 cut(s) | 254 |
| AoxI | GGCC | 3 cut(s) | 42, 51, 180 |
| AspLEI | GCGC | 1 cut(s) | 239 |
| AspS9I | GGNCC | 1 cut(s) | 100 |
| AsuHPI | GGTGA | 1 cut(s) | 275 |
| AvaII | GGWCC | 1 cut(s) | 100 |
| BccI | CCATC | 2 cut(s) | 53, 313 |
| BceAI | ACGGC | 4 cut(s) | 25, 38, 82, 167 |
| BfaI | CTAG | 1 cut(s) | 299 |
| BfoI | RGCGCY | 1 cut(s) | 240 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 50 |
| Bme18I | GGWCC | 1 cut(s) | 100 |
| BmgT120I | GGNCC | 1 cut(s) | 100 |
| BmiI | GGNNCC | 2 cut(s) | 19, 222 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 32, 64 |
| BsaJI | CCNNGG | 2 cut(s) | 78, 183 |
| BsaWI | WCCGGW | 1 cut(s) | 254 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 40, 254 |
| BseAI | TCCGGA | 1 cut(s) | 254 |
| BseDI | CCNNGG | 2 cut(s) | 78, 183 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 40, 254 |
| BseRI | GAGGAG | 2 cut(s) | 95, 203 |
| BseX3I | CGGCCG | 1 cut(s) | 51 |
| Bsh1285I | CGRYCG | 1 cut(s) | 54 |
| BshFI | GGCC | 3 cut(s) | 44, 53, 182 |
| BsiEI | CGRYCG | 1 cut(s) | 54 |
| BsiSI | CCGG | 2 cut(s) | 209, 255 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 40, 254 |
| BsnI | GGCC | 3 cut(s) | 44, 53, 182 |
| Bsp13I | TCCGGA | 1 cut(s) | 254 |
| Bsp143I | GATC | 1 cut(s) | 22 |
| BspACI | CCGC | 2 cut(s) | 224, 261 |
| BspANI | GGCC | 3 cut(s) | 44, 53, 182 |
| BspEI | TCCGGA | 1 cut(s) | 254 |
| BspLI | GGNNCC | 2 cut(s) | 19, 222 |
| BssECI | CCNNGG | 2 cut(s) | 78, 183 |
| BssMI | GATC | 1 cut(s) | 22 |
| Bst4CI | ACNGT | 1 cut(s) | 35 |
| BstDSI | CCRYGG | 1 cut(s) | 183 |
| BstH2I | RGCGCY | 1 cut(s) | 240 |
| BstHHI | GCGC | 1 cut(s) | 239 |
| BstKTI | GATC | 1 cut(s) | 25 |
| BstMBI | GATC | 1 cut(s) | 22 |
| BstMCI | CGRYCG | 1 cut(s) | 54 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 50 |
| BstZI | CGGCCG | 1 cut(s) | 51 |
| BsuRI | GGCC | 3 cut(s) | 44, 53, 182 |
| BtgI | CCRYGG | 1 cut(s) | 183 |
| CfoI | GCGC | 1 cut(s) | 239 |
| Cfr13I | GGNCC | 1 cut(s) | 100 |
| CviJI | RGCY | 7 cut(s) | 20, 44, 53, 69, 77, 182, 221 |
| CviKI_1 | RGCY | 7 cut(s) | 20, 44, 53, 69, 77, 182, 221 |
| DpnI | GATC | 1 cut(s) | 24 |
| DpnII | GATC | 1 cut(s) | 22 |
| DraI | TTTAAA | 1 cut(s) | 172 |
| EaeI | YGGCCR | 1 cut(s) | 51 |
| EagI | CGGCCG | 1 cut(s) | 51 |
| EclXI | CGGCCG | 1 cut(s) | 51 |
| Eco47I | GGWCC | 1 cut(s) | 100 |
| Eco52I | CGGCCG | 1 cut(s) | 51 |
| EcoO109I | RGGNCCY | 1 cut(s) | 100 |
| FaiI | YATR | 1 cut(s) | 146 |
| FspBI | CTAG | 1 cut(s) | 299 |
| GlaI | GCGC | 1 cut(s) | 238 |
| HaeII | RGCGCY | 1 cut(s) | 240 |
| HaeIII | GGCC | 3 cut(s) | 44, 53, 182 |
| HapII | CCGG | 2 cut(s) | 209, 255 |
| HhaI | GCGC | 1 cut(s) | 239 |
| Hin6I | GCGC | 1 cut(s) | 237 |
| HinP1I | GCGC | 1 cut(s) | 237 |
| HinfI | GANTC | 2 cut(s) | 161, 295 |
| HpaII | CCGG | 2 cut(s) | 209, 255 |
| HphI | GGTGA | 1 cut(s) | 275 |
| Hpy188I | TCNGA | 2 cut(s) | 243, 294 |
| Hpy188III | TCNNGA | 1 cut(s) | 255 |
| Hpy99I | CGWCG | 6 cut(s) | 11, 17, 59, 65, 68, 92 |
| HpyAV | CCTTC | 1 cut(s) | 190 |
| HpyCH4III | ACNGT | 1 cut(s) | 35 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 50 |
| HspAI | GCGC | 1 cut(s) | 237 |
| Kpn2I | TCCGGA | 1 cut(s) | 254 |
| Kzo9I | GATC | 1 cut(s) | 22 |
| LmnI | GCTCC | 3 cut(s) | 17, 226, 244 |
| LpnPI | CCDG | 4 cut(s) | 150, 222, 264, 268 |
| MaeI | CTAG | 1 cut(s) | 299 |
| MaeIII | GTNAC | 1 cut(s) | 35 |
| MalI | GATC | 1 cut(s) | 24 |
| MboI | GATC | 1 cut(s) | 22 |
| MboII | GAAGA | 1 cut(s) | 205 |
| MroI | TCCGGA | 1 cut(s) | 254 |
| MseI | TTAA | 1 cut(s) | 171 |
| MspI | CCGG | 2 cut(s) | 209, 255 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 50 |
| NdeII | GATC | 1 cut(s) | 22 |
| NlaIV | GGNNCC | 2 cut(s) | 19, 222 |
| NmeAIII | GCCGAG | 2 cut(s) | 29, 103 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 93 |
| PfeI | GAWTC | 2 cut(s) | 161, 295 |
| PpuMI | RGGWCCY | 1 cut(s) | 100 |
| Psp5II | RGGWCCY | 1 cut(s) | 100 |
| PspN4I | GGNNCC | 2 cut(s) | 19, 222 |
| PspPI | GGNCC | 1 cut(s) | 100 |
| PspPPI | RGGWCCY | 1 cut(s) | 100 |
| SaqAI | TTAA | 1 cut(s) | 171 |
| Sau3AI | GATC | 1 cut(s) | 22 |
| Sau96I | GGNCC | 1 cut(s) | 100 |
| SetI | ASST | 4 cut(s) | 105, 201, 216, 330 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 50 |
| SinI | GGWCC | 1 cut(s) | 100 |
| SsiI | CCGC | 2 cut(s) | 224, 261 |
| SspMI | CTAG | 1 cut(s) | 299 |
| TaaI | ACNGT | 1 cut(s) | 35 |
| TfiI | GAWTC | 2 cut(s) | 161, 295 |
| Tru1I | TTAA | 1 cut(s) | 171 |
| Tru9I | TTAA | 1 cut(s) | 171 |
| TspGWI | ACGGA | 1 cut(s) | 30 |
| VpaK11BI | GGWCC | 1 cut(s) | 100 |
| XspI | CTAG | 1 cut(s) | 299 |