MD04G1089300.v1.1

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0008886
Physical Location & Seq
Forward (+)
15683621 .. 15684500
880 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1089300.v1.1.491

Sequence Viewer

Length: 204 bp
ATGTCCCGTGTATGGGAAAAACTTGATGAGGAGGTCGCAGGGACTCCCATGCCTCAGAAGTATCAAAATAAGATGGTTTGGATCCTCTGCAACGACTGTGGCGAAACATCTCAGGTTAATTTTCACATTGTGGCACACAAGTGCCTCAAGTGCAAATCCTACAATACAAGGAAAACACAAAGGGCCAGCGTCATTCTCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

68

Amino Acids

7.79

Weight (kDa)

9.05

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zinc_ribbon_6 PF14599 1 - 57 3.6e-28 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 76, 89
AdeI CACNNNGTG 1 cut(s) 130
AfiI CCNNNNNNNGG 2 cut(s) 12, 13
AleI CACNNNNGTG 1 cut(s) 139
AlwI GGATC 2 cut(s) 76, 89
AoxI GGCC 1 cut(s) 183
AspS9I GGNCC 1 cut(s) 183
BamHI GGATCC 1 cut(s) 81
BccI CCATC 1 cut(s) 67
BfaI CTAG 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 131
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 13
BseLI CCNNNNNNNGG 2 cut(s) 12, 13
BseMII CTCAG 2 cut(s) 68, 125
BseRI GAGGAG 1 cut(s) 44
BshFI GGCC 1 cut(s) 185
BslFI GGGAC 1 cut(s) 55
BslI CCNNNNNNNGG 2 cut(s) 12, 13
BsmFI GGGAC 1 cut(s) 55
BsnI GGCC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 81
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 2 cut(s) 67, 124
BspLI GGNNCC 1 cut(s) 83
BspPI GGATC 2 cut(s) 76, 89
BssMI GATC 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 2 cut(s) 54, 111
BstKTI GATC 1 cut(s) 84
BstMBI GATC 1 cut(s) 81
BstMWI GCNNNNNNNGC 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BsuRI GGCC 1 cut(s) 185
Cac8I GCNNGC 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 183
CseI GACGC 1 cut(s) 178
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
CviAII CATG 1 cut(s) 49
CviJI RGCY 1 cut(s) 185
CviKI_1 RGCY 1 cut(s) 185
DdeI CTNAG 2 cut(s) 54, 111
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
DraIII CACNNNGTG 1 cut(s) 130
FaeI CATG 1 cut(s) 52
FaiI YATR 2 cut(s) 13, 50
FaqI GGGAC 1 cut(s) 55
FatI CATG 1 cut(s) 48
FspBI CTAG 1 cut(s) 202
HaeIII GGCC 1 cut(s) 185
HgaI GACGC 1 cut(s) 178
Hin1II CATG 1 cut(s) 52
HinfI GANTC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 57
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4V TGCA 2 cut(s) 90, 153
HpyF10VI GCNNNNNNNGC 1 cut(s) 150
HpyF3I CTNAG 2 cut(s) 54, 111
Hsp92II CATG 1 cut(s) 52
Kzo9I GATC 1 cut(s) 81
LpnPI CCDG 3 cut(s) 24, 98, 199
MaeI CTAG 1 cut(s) 202
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MflI RGATCY 1 cut(s) 81
MluCI AATT 1 cut(s) 118
MlyI GAGTC 1 cut(s) 37
MnlI CCTC 5 cut(s) 22, 25, 63, 95, 155
MseI TTAA 1 cut(s) 117
MslI CAYNNNNRTG 1 cut(s) 139
MwoI GCNNNNNNNGC 1 cut(s) 150
NdeII GATC 1 cut(s) 81
NlaIII CATG 1 cut(s) 52
NlaIV GGNNCC 1 cut(s) 83
OliI CACNNNNGTG 1 cut(s) 139
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 83
PspPI GGNCC 1 cut(s) 183
PsuI RGATCY 1 cut(s) 81
RseI CAYNNNNRTG 1 cut(s) 139
SaqAI TTAA 1 cut(s) 117
Sau3AI GATC 1 cut(s) 81
Sau96I GGNCC 1 cut(s) 183
SchI GAGTC 1 cut(s) 37
SetI ASST 2 cut(s) 36, 117
SmiMI CAYNNNNRTG 1 cut(s) 139
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 1 cut(s) 118
SspMI CTAG 1 cut(s) 202
TaaI ACNGT 1 cut(s) 98
TasI AATT 1 cut(s) 118
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
XspI CTAG 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.