Rh5BG293200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0008886
Physical Location & Seq
Reverse (-)
37340897 .. 37341178
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG293200.1

Sequence Viewer

Length: 282 bp
ATGCAAAATCGGGCTACAGACCACAGTAACGGCGGTACGAAGGCTGAGAGTGGTCAGAAAACAACGTCGTCCAGCACCTCAGCAAACGCACCGCCCAACTCTGAAGCACTTCCTTCACATAAGCTCGAAATCGTTGGCGTCGTCATCCTCCGACGCCTCGCTCAGCTTGCCTCTGTGATTGCGAGTCCTTCTCCATCTCCTCGCGCCTCTCGCTTTTGTCCTCGTCCTCGGGGCACGAGCACGACGACCTGCCCCAGATCTCCCTCGATTCGGAAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

9.77

Weight (kDa)

11.49

Isoelectric Point (pI)

69.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 257
AccII CGCG 1 cut(s) 204
AciI CCGC 2 cut(s) 33, 92
AcuI CTGAAG 1 cut(s) 123
AcyI GRCGYC 2 cut(s) 138, 154
AfaI GTAC 1 cut(s) 37
AfiI CCNNNNNNNGG 1 cut(s) 270
AluBI AGCT 2 cut(s) 124, 166
AluI AGCT 2 cut(s) 124, 166
Alw21I GWGCWC 1 cut(s) 242
Ama87I CYCGRG 1 cut(s) 228
Asp700I GAANNNNTTC 1 cut(s) 108
AspLEI GCGC 1 cut(s) 206
AvaI CYCGRG 1 cut(s) 228
BaeGI GKGCMC 1 cut(s) 236
BauI CACGAG 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 242
BbvCI CCTCAGC 1 cut(s) 79
BccI CCATC 1 cut(s) 202
BceAI ACGGC 1 cut(s) 46
BfmI CTRYAG 1 cut(s) 15
BfuAI ACCTGC 1 cut(s) 257
BglII AGATCT 1 cut(s) 257
BlpI GCTNAGC 1 cut(s) 162
BmeT110I CYCGRG 1 cut(s) 228
BplI GAGNNNNNCTC 2 cut(s) 175, 207
Bpu10I CCTNAGC 1 cut(s) 79
Bpu1102I GCTNAGC 1 cut(s) 162
BsaHI GRCGYC 2 cut(s) 138, 154
BsaJI CCNNGG 1 cut(s) 227
Bsc4I CCNNNNNNNGG 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 227
BseGI GGATG 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 270
BseMII CTCAG 3 cut(s) 36, 93, 176
BseRI GAGGAG 1 cut(s) 189
BseSI GKGCMC 1 cut(s) 236
Bsh1236I CGCG 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 228
BslI CCNNNNNNNGG 1 cut(s) 270
BsoBI CYCGRG 1 cut(s) 228
Bsp1286I GDGCHC 2 cut(s) 236, 242
Bsp143I GATC 1 cut(s) 257
Bsp1720I GCTNAGC 1 cut(s) 162
BspACI CCGC 2 cut(s) 33, 92
BspCNI CTCAG 3 cut(s) 37, 92, 175
BspFNI CGCG 1 cut(s) 204
BspMI ACCTGC 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 227
BssMI GATC 1 cut(s) 257
BssNI GRCGYC 2 cut(s) 138, 154
BssSI CACGAG 1 cut(s) 235
Bst2BI CACGAG 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 26
BstACI GRCGYC 2 cut(s) 138, 154
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 3 cut(s) 45, 79, 162
BstF5I GGATG 1 cut(s) 144
BstFNI CGCG 1 cut(s) 204
BstHHI GCGC 1 cut(s) 206
BstKTI GATC 1 cut(s) 260
BstMBI GATC 1 cut(s) 257
BstMWI GCNNNNNNNGC 2 cut(s) 167, 210
BstSFI CTRYAG 1 cut(s) 15
BstSLI GKGCMC 1 cut(s) 236
BstUI CGCG 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 257
BstYI RGATCY 1 cut(s) 257
BtsCI GGATG 1 cut(s) 144
BveI ACCTGC 1 cut(s) 257
Cac8I GCNNGC 1 cut(s) 168
CfoI GCGC 1 cut(s) 206
CseI GACGC 2 cut(s) 127, 162
Csp6I GTAC 1 cut(s) 36
CviJI RGCY 4 cut(s) 14, 44, 124, 166
CviKI_1 RGCY 4 cut(s) 14, 44, 124, 166
CviQI GTAC 1 cut(s) 36
DdeI CTNAG 3 cut(s) 45, 79, 162
DpnI GATC 1 cut(s) 259
DpnII GATC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 123
Eco88I CYCGRG 1 cut(s) 228
FaiI YATR 1 cut(s) 120
FokI GGATG 1 cut(s) 131
GlaI GCGC 1 cut(s) 205
HgaI GACGC 2 cut(s) 127, 162
HhaI GCGC 1 cut(s) 206
Hin1I GRCGYC 2 cut(s) 138, 154
Hin6I GCGC 1 cut(s) 204
HinP1I GCGC 1 cut(s) 204
HinfI GANTC 2 cut(s) 184, 268
Hpy188I TCNGA 4 cut(s) 57, 103, 152, 273
Hpy99I CGWCG 4 cut(s) 70, 143, 156, 247
HpyAV CCTTC 3 cut(s) 34, 123, 198
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 210
HpyF3I CTNAG 3 cut(s) 45, 79, 162
HpySE526I ACGT 1 cut(s) 65
Hsp92I GRCGYC 2 cut(s) 138, 154
HspAI GCGC 1 cut(s) 204
Kzo9I GATC 1 cut(s) 257
LpnPI CCDG 3 cut(s) 85, 262, 268
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 1 cut(s) 26
MalI GATC 1 cut(s) 259
MboI GATC 1 cut(s) 257
MflI RGATCY 1 cut(s) 257
MhlI GDGCHC 2 cut(s) 236, 242
MluCI AATT 1 cut(s) 277
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 1 cut(s) 175
MnlI CCTC 9 cut(s) 88, 158, 167, 181, 210, 217, 231, 237, 274
MroXI GAANNNNTTC 1 cut(s) 108
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 2 cut(s) 167, 210
NdeII GATC 1 cut(s) 257
PcsI WCGNNNNNNNCGW 2 cut(s) 138, 242
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 1 cut(s) 268
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
PsuI RGATCY 1 cut(s) 257
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
Sau3AI GATC 1 cut(s) 257
SchI GAGTC 1 cut(s) 193
SduI GDGCHC 2 cut(s) 236, 242
SetI ASST 5 cut(s) 68, 80, 126, 168, 251
SfcI CTRYAG 1 cut(s) 15
Sse9I AATT 1 cut(s) 277
SsiI CCGC 2 cut(s) 33, 92
TaaI ACNGT 1 cut(s) 26
TaiI ACGT 1 cut(s) 68
TaqI TCGA 2 cut(s) 126, 266
TasI AATT 1 cut(s) 277
TfiI GAWTC 1 cut(s) 268
XmnI GAANNNNTTC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.