Rmu_co8224918.1_g000001

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8224918.1
OG0008886
Physical Location & Seq
Reverse (-)
33 .. 580
548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8224918.1_g000001.1.cds

Sequence Viewer

Length: 345 bp
atgcatcatgactgccctgtttgcttcgagttcttatttgactcaagaaatgatgttacagtgatgccatgtggacacactattcacaagcattgcttgaaagagatgagagaccatttgcaatatgcttgccctctttgctccaagtcagtttgtgatatgtccaaggtatgggagaaatatgatatggagatcgcagctacaccaatgcccgaaccatatcaaaataaacaagtttcaattctgtgcaacgactgtgggaagagctcacaagtgcagtttcacattgtggcgcagaaatgctcaaattgcaaatcttacaatactcgccaaacaagaggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

114

Amino Acids

13.16

Weight (kDa)

7.54

Isoelectric Point (pI)

63.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 171
AdeI CACNNNGTG 1 cut(s) 289
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 2 cut(s) 100, 240
AluBI AGCT 2 cut(s) 200, 267
AluI AGCT 2 cut(s) 200, 267
Alw21I GWGCWC 1 cut(s) 269
Alw26I GTCTC 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 197
AspLEI GCGC 1 cut(s) 295
BanII GRGCYC 1 cut(s) 269
Bbv12I GWGCWC 1 cut(s) 269
BbvI GCAGC 1 cut(s) 209
BcoDI GTCTC 1 cut(s) 105
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
BmsI GCATC 2 cut(s) 13, 54
BpuEI CTTGAG 1 cut(s) 28
BsaI GGTCTC 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 165
BseLI CCNNNNNNNGG 1 cut(s) 171
BseMI GCAATG 1 cut(s) 91
BseXI GCAGC 1 cut(s) 209
BsgI GTGCAG 1 cut(s) 296
BsiHKAI GWGCWC 1 cut(s) 269
BslI CCNNNNNNNGG 1 cut(s) 171
BsmAI GTCTC 1 cut(s) 105
Bso31I GGTCTC 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 269
Bsp143I GATC 1 cut(s) 192
BspHI TCATGA 1 cut(s) 7
BspQI GCTCTTC 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 105
BsrDI GCAATG 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 61, 257
Bst6I CTCTTC 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 130
BstHHI GCGC 1 cut(s) 295
BstKTI GATC 1 cut(s) 195
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 1 cut(s) 192
BstMWI GCNNNNNNNGC 3 cut(s) 21, 138, 309
BstV1I GCAGC 1 cut(s) 209
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 1 cut(s) 130
CciI TCATGA 1 cut(s) 7
CfoI GCGC 1 cut(s) 295
CspCI CAANNNNNGTGG 2 cut(s) 238, 273
CviAII CATG 2 cut(s) 8, 69
CviJI RGCY 3 cut(s) 200, 267, 342
CviKI_1 RGCY 3 cut(s) 200, 267, 342
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
DraIII CACNNNGTG 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Ecl136II GAGCTC 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 269
Eco31I GGTCTC 1 cut(s) 105
Eco53kI GAGCTC 1 cut(s) 267
EcoICRI GAGCTC 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 165
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 269
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 2 cut(s) 11, 72
FaiI YATR 8 cut(s) 9, 70, 126, 161, 172, 183, 188, 220
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FatI CATG 2 cut(s) 7, 68
Fnu4HI GCNGC 1 cut(s) 198
FriOI GRGCYC 1 cut(s) 269
Fsp4HI GCNGC 1 cut(s) 198
GlaI GCGC 1 cut(s) 294
GluI GCNGC 1 cut(s) 198
HhaI GCGC 1 cut(s) 295
Hin1II CATG 2 cut(s) 11, 72
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HinfI GANTC 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 74
Hpy188III TCNNGA 2 cut(s) 8, 45
Hpy8I GTNNAC 1 cut(s) 74
HpyCH4III ACNGT 2 cut(s) 61, 257
HpyCH4V TGCA 5 cut(s) 4, 121, 249, 277, 312
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 138, 309
Hsp92II CATG 2 cut(s) 11, 72
HspAI GCGC 1 cut(s) 293
Kzo9I GATC 1 cut(s) 192
LguI GCTCTTC 1 cut(s) 257
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 1 cut(s) 30
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 2 cut(s) 13, 54
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MboII GAAGA 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 269
MluCI AATT 2 cut(s) 240, 307
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 2 cut(s) 144, 332
Mph1103I ATGCAT 1 cut(s) 6
MwoI GCNNNNNNNGC 3 cut(s) 21, 138, 309
NdeII GATC 1 cut(s) 192
NlaIII CATG 2 cut(s) 11, 72
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 7
PciSI GCTCTTC 1 cut(s) 257
PflMI CCANNNNNTGG 1 cut(s) 171
PkrI GCNGC 1 cut(s) 199
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
Psp124BI GAGCTC 1 cut(s) 269
SacI GAGCTC 1 cut(s) 269
SapI GCTCTTC 1 cut(s) 257
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 1 cut(s) 192
SchI GAGTC 1 cut(s) 35
SduI GDGCHC 1 cut(s) 269
SetI ASST 3 cut(s) 171, 202, 269
SfaNI GCATC 2 cut(s) 13, 54
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
Sse9I AATT 2 cut(s) 240, 307
SstI GAGCTC 1 cut(s) 269
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 2 cut(s) 61, 257
TaqI TCGA 1 cut(s) 27
TasI AATT 2 cut(s) 240, 307
TscAI CASTG 1 cut(s) 66
TseI GCWGC 1 cut(s) 197
TspRI CASTG 1 cut(s) 66
Van91I CCANNNNNTGG 1 cut(s) 171
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.