Rh5BG241200

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0008886
Physical Location & Seq
Reverse (-)
29083798 .. 29084305
508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG241200.1

Sequence Viewer

Length: 396 bp
ATGTTCTCCCTCCACCGCAATATGGCGCGAGCCAAAACGGCAGTCAAGATTCAGGAAATCGAGCAGAGAGCGACGACGGATCAAGAGGCGAGGGTGGGATGGAGCACGAGCAGCCCGAGAATGAACTCGTCGGGGAAAATAGTGTTCCAAAGCTTAGAGCGTAGCTCAAGCAGTCCAAGCAGCTTCAATGATGGTGGTGTTGATGTTGAGTTGTGTTGTGCAGAGCTGCTGGGCGAGAGAGTGAAGGAAGAGATTGACATGTCTAGAACCTGGAAGAAAATAGATGAAGAGATTGAAGCCATTGTTATGCCCGAGGATTACCGGAATAACAATGTTTGGATCCTGTGCAATGACTGCAATGACACAACTGAAGTTTACTTCCACATTATTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000731 GO:0002039 GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019941 GO:0019985 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031347 GO:0031348 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032102 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045862 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0090304 GO:0140096 GO:1900424 GO:1900425 GO:1901360 GO:1901362 GO:1901483 GO:1901485 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-C3HC4 zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

131

Amino Acids

14.92

Weight (kDa)

4.85

Isoelectric Point (pI)

64.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zinc_ribbon_6 PF14599 85 - 131 2.4e-17 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 28
AciI CCGC 1 cut(s) 16
AclWI GGATC 3 cut(s) 87, 334, 347
AcuI CTGAAG 1 cut(s) 390
AfiI CCNNNNNNNGG 1 cut(s) 22
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 2 cut(s) 187, 296
AjnI CCWGG 1 cut(s) 269
AluBI AGCT 4 cut(s) 153, 165, 183, 226
AluI AGCT 4 cut(s) 153, 165, 183, 226
Alw21I GWGCWC 1 cut(s) 107
AlwI GGATC 3 cut(s) 87, 334, 347
Ama87I CYCGRG 2 cut(s) 115, 311
ApeKI GCWGC 3 cut(s) 111, 180, 226
ArsI GACNNNNNNTTYG 2 cut(s) 27, 59
AspLEI GCGC 1 cut(s) 28
AvaI CYCGRG 2 cut(s) 115, 311
BamHI GGATCC 1 cut(s) 339
BauI CACGAG 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 107
BbvI GCAGC 3 cut(s) 123, 192, 213
BccI CCATC 2 cut(s) 93, 185
BceAI ACGGC 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 271
BfaI CTAG 1 cut(s) 264
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 3 cut(s) 112, 181, 227
BlsI GCNGC 3 cut(s) 113, 182, 228
Bme1390I CCNGG 1 cut(s) 271
BmeT110I CYCGRG 2 cut(s) 115, 311
BmiI GGNNCC 1 cut(s) 341
BmrFI CCNGG 1 cut(s) 271
BplI GAGNNNNNCTC 2 cut(s) 149, 181
BpuEI CTTGAG 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 312
BsaWI WCCGGW 1 cut(s) 321
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse3DI GCAATG 2 cut(s) 355, 364
BseBI CCWGG 1 cut(s) 271
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 1 cut(s) 104
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMI GCAATG 2 cut(s) 355, 364
BseXI GCAGC 3 cut(s) 123, 192, 213
BseYI CCCAGC 1 cut(s) 229
BsgI GTGCAG 1 cut(s) 240
Bsh1236I CGCG 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 107
BsiHKCI CYCGRG 2 cut(s) 115, 311
BsiSI CCGG 1 cut(s) 322
BslI CCNNNNNNNGG 1 cut(s) 22
BsoBI CYCGRG 2 cut(s) 115, 311
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 2 cut(s) 79, 339
BspACI CCGC 1 cut(s) 16
BspFNI CGCG 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 341
BspPI GGATC 3 cut(s) 87, 334, 347
BsrDI GCAATG 2 cut(s) 355, 364
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 2 cut(s) 79, 339
BssSI CACGAG 1 cut(s) 106
Bst2BI CACGAG 1 cut(s) 106
Bst2UI CCWGG 1 cut(s) 271
Bst6I CTCTTC 2 cut(s) 243, 282
BstAPI GCANNNNNTGC 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 154
BstF5I GGATG 1 cut(s) 104
BstFNI CGCG 1 cut(s) 28
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 2 cut(s) 82, 342
BstMBI GATC 2 cut(s) 79, 339
BstMWI GCNNNNNNNGC 4 cut(s) 38, 111, 177, 354
BstNI CCWGG 1 cut(s) 271
BstNSI RCATGY 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 269
BstUI CGCG 1 cut(s) 28
BstV1I GCAGC 3 cut(s) 123, 192, 213
BstX2I RGATCY 1 cut(s) 339
BstXI CCANNNNNNTGG 1 cut(s) 389
BstYI RGATCY 1 cut(s) 339
BtsCI GGATG 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 30
CfoI GCGC 1 cut(s) 28
CspCI CAANNNNNGTGG 2 cut(s) 175, 210
CviAII CATG 1 cut(s) 259
CviJI RGCY 7 cut(s) 32, 114, 153, 165, 183, 226, 299
CviKI_1 RGCY 7 cut(s) 32, 114, 153, 165, 183, 226, 299
DdeI CTNAG 1 cut(s) 154
DpnI GATC 2 cut(s) 81, 341
DpnII GATC 2 cut(s) 79, 339
Eam1104I CTCTTC 2 cut(s) 243, 282
EarI CTCTTC 2 cut(s) 243, 282
Eco57I CTGAAG 1 cut(s) 390
Eco88I CYCGRG 2 cut(s) 115, 311
EcoRII CCWGG 1 cut(s) 269
FaeI CATG 1 cut(s) 262
FaiI YATR 3 cut(s) 23, 260, 308
FatI CATG 1 cut(s) 258
Fnu4HI GCNGC 3 cut(s) 112, 181, 227
FokI GGATG 1 cut(s) 111
Fsp4HI GCNGC 3 cut(s) 112, 181, 227
FspBI CTAG 1 cut(s) 264
GlaI GCGC 1 cut(s) 27
GluI GCNGC 3 cut(s) 112, 181, 227
GsaI CCCAGC 1 cut(s) 233
HapII CCGG 1 cut(s) 322
HhaI GCGC 1 cut(s) 28
Hin1II CATG 1 cut(s) 262
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HindIII AAGCTT 1 cut(s) 151
HinfI GANTC 1 cut(s) 49
HpaII CCGG 1 cut(s) 322
Hpy166II GTNNAC 1 cut(s) 376
Hpy188III TCNNGA 4 cut(s) 46, 53, 83, 264
Hpy8I GTNNAC 1 cut(s) 376
Hpy99I CGWCG 3 cut(s) 76, 79, 133
HpyAV CCTTC 1 cut(s) 238
HpyCH4V TGCA 3 cut(s) 221, 348, 357
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 111, 177, 354
HpyF3I CTNAG 1 cut(s) 154
Hsp92II CATG 1 cut(s) 262
HspAI GCGC 1 cut(s) 26
Kzo9I GATC 2 cut(s) 79, 339
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 6 cut(s) 38, 215, 256, 283, 335, 356
Lsp1109I GCAGC 3 cut(s) 123, 192, 213
MaeI CTAG 1 cut(s) 264
MalI GATC 2 cut(s) 81, 341
MboI GATC 2 cut(s) 79, 339
MboII GAAGA 3 cut(s) 260, 286, 299
MflI RGATCY 1 cut(s) 339
MhlI GDGCHC 1 cut(s) 107
MnlI CCTC 4 cut(s) 20, 79, 84, 307
MslI CAYNNNNRTG 1 cut(s) 305
MspI CCGG 1 cut(s) 322
MspR9I CCNGG 1 cut(s) 271
MvaI CCWGG 1 cut(s) 271
MvnI CGCG 1 cut(s) 28
MwoI GCNNNNNNNGC 4 cut(s) 38, 111, 177, 354
NdeII GATC 2 cut(s) 79, 339
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 1 cut(s) 341
NspI RCATGY 1 cut(s) 262
PciI ACATGT 1 cut(s) 258
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PfeI GAWTC 1 cut(s) 49
PkrI GCNGC 3 cut(s) 113, 182, 228
PscI ACATGT 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 269
PspFI CCCAGC 1 cut(s) 229
PspGI CCWGG 1 cut(s) 269
PspN4I GGNNCC 1 cut(s) 341
PsuI RGATCY 1 cut(s) 339
RseI CAYNNNNRTG 1 cut(s) 305
SatI GCNGC 3 cut(s) 112, 181, 227
Sau3AI GATC 2 cut(s) 79, 339
ScrFI CCNGG 1 cut(s) 271
SduI GDGCHC 1 cut(s) 107
SetI ASST 5 cut(s) 155, 167, 185, 228, 272
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
SsiI CCGC 1 cut(s) 16
SspMI CTAG 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 269
TaqI TCGA 1 cut(s) 60
TfiI GAWTC 1 cut(s) 49
TseI GCWGC 3 cut(s) 111, 180, 226
TspDTI ATGAA 2 cut(s) 137, 300
TspGWI ACGGA 1 cut(s) 92
XbaI TCTAGA 1 cut(s) 263
XceI RCATGY 1 cut(s) 262
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.