Rh1DG057800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0008886
Physical Location & Seq
Reverse (-)
9391862 .. 9392215
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG057800.1

Sequence Viewer

Length: 354 bp
ATGGTGTTTCCATCTCCATCTCCTCGCGCCTCTTGCTCTCGTCCTCGTCCTCAGGGCACGAGCATGATGACCATGAAAGCGAACCCGAACCCAATGTTCTCCCTCCACCGCAAAACGGCGCGGGCCAAAACGGCAGTCAAGATTCAGGAAATCGAGCACAGAGCGGCGGCGGATCAGGCGGCGAGGGTGGGACGGAGCTCGAGCAGCTCGAGAATGAACTCGTTGGGGAAAATGGTGTTCCAAAGCTTAGAGCCTAGCTCAAGCAGTCCAAGCAACTTCAATGGTGGGTATGGTGTTTCTCATGATTTCCGGAATCTCACTTCTCTCTTCATTCATAGGCCAAACTATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.86

Weight (kDa)

11.18

Isoelectric Point (pI)

63.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 164
AccII CGCG 2 cut(s) 27, 121
AccIII TCCGGA 1 cut(s) 309
AciI CCGC 6 cut(s) 109, 121, 164, 167, 170, 179
AclWI GGATC 1 cut(s) 180
AfiI CCNNNNNNNGG 1 cut(s) 115
AgsI TTSAA 1 cut(s) 280
AluBI AGCT 4 cut(s) 198, 207, 246, 258
AluI AGCT 4 cut(s) 198, 207, 246, 258
Alw21I GWGCWC 2 cut(s) 159, 200
AlwI GGATC 1 cut(s) 180
Ama87I CYCGRG 2 cut(s) 199, 208
Aor13HI TCCGGA 1 cut(s) 309
AoxI GGCC 2 cut(s) 123, 338
ApeKI GCWGC 1 cut(s) 204
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
AspLEI GCGC 2 cut(s) 29, 121
AspS9I GGNCC 1 cut(s) 123
AvaI CYCGRG 2 cut(s) 199, 208
AxyI CCTNAGG 1 cut(s) 51
BaeGI GKGCMC 1 cut(s) 59
BanII GRGCYC 1 cut(s) 200
BauI CACGAG 1 cut(s) 58
Bbv12I GWGCWC 2 cut(s) 159, 200
BbvI GCAGC 1 cut(s) 216
BccI CCATC 2 cut(s) 19, 25
BceAI ACGGC 2 cut(s) 132, 147
BfaI CTAG 1 cut(s) 255
BglI GCCNNNNNGGC 1 cut(s) 131
BisI GCNGC 4 cut(s) 165, 168, 180, 205
BlsI GCNGC 4 cut(s) 166, 169, 181, 206
BmeT110I CYCGRG 2 cut(s) 199, 208
BmgT120I GGNCC 1 cut(s) 123
BplI GAGNNNNNCTC 2 cut(s) 242, 274
BpuEI CTTGAG 1 cut(s) 244
BsaWI WCCGGW 1 cut(s) 309
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse21I CCTNAGG 1 cut(s) 51
BseAI TCCGGA 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 65
BseRI GAGGAG 1 cut(s) 12
BseSI GKGCMC 1 cut(s) 59
BseXI GCAGC 1 cut(s) 216
Bsh1236I CGCG 2 cut(s) 27, 121
BshFI GGCC 2 cut(s) 125, 340
BsiHKAI GWGCWC 2 cut(s) 159, 200
BsiHKCI CYCGRG 2 cut(s) 199, 208
BsiSI CCGG 1 cut(s) 310
BslFI GGGAC 1 cut(s) 204
BslI CCNNNNNNNGG 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 204
BsnI GGCC 2 cut(s) 125, 340
BsoBI CYCGRG 2 cut(s) 199, 208
Bsp1286I GDGCHC 3 cut(s) 59, 159, 200
Bsp13I TCCGGA 1 cut(s) 309
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 6 cut(s) 109, 121, 164, 167, 170, 179
BspANI GGCC 2 cut(s) 125, 340
BspCNI CTCAG 1 cut(s) 64
BspEI TCCGGA 1 cut(s) 309
BspFNI CGCG 2 cut(s) 27, 121
BspHI TCATGA 1 cut(s) 301
BspPI GGATC 1 cut(s) 180
BsrBI CCGCTC 1 cut(s) 164
BssMI GATC 1 cut(s) 172
BssSI CACGAG 1 cut(s) 58
Bst2BI CACGAG 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 2 cut(s) 51, 247
BstFNI CGCG 2 cut(s) 27, 121
BstHHI GCGC 2 cut(s) 29, 121
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 5 cut(s) 33, 131, 176, 204, 270
BstSLI GKGCMC 1 cut(s) 59
BstUI CGCG 2 cut(s) 27, 121
BstV1I GCAGC 1 cut(s) 216
Bsu36I CCTNAGG 1 cut(s) 51
BsuRI GGCC 2 cut(s) 125, 340
Cac8I GCNNGC 1 cut(s) 123
CciI TCATGA 1 cut(s) 301
CfoI GCGC 2 cut(s) 29, 121
Cfr13I GGNCC 1 cut(s) 123
CviAII CATG 3 cut(s) 64, 73, 302
CviJI RGCY 7 cut(s) 125, 198, 207, 246, 253, 258, 340
CviKI_1 RGCY 7 cut(s) 125, 198, 207, 246, 253, 258, 340
DdeI CTNAG 2 cut(s) 51, 247
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eam1104I CTCTTC 1 cut(s) 332
EarI CTCTTC 1 cut(s) 332
EciI GGCGGA 1 cut(s) 185
Ecl136II GAGCTC 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 200
Eco53kI GAGCTC 1 cut(s) 198
Eco81I CCTNAGG 1 cut(s) 51
Eco88I CYCGRG 2 cut(s) 199, 208
EcoICRI GAGCTC 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 200
FaeI CATG 3 cut(s) 67, 76, 305
FaiI YATR 5 cut(s) 65, 74, 291, 303, 336
FaqI GGGAC 1 cut(s) 204
FatI CATG 3 cut(s) 63, 72, 301
FauI CCCGC 1 cut(s) 114
Fnu4HI GCNGC 4 cut(s) 165, 168, 180, 205
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 4 cut(s) 165, 168, 180, 205
FspBI CTAG 1 cut(s) 255
GlaI GCGC 2 cut(s) 28, 120
GluI GCNGC 4 cut(s) 165, 168, 180, 205
HaeIII GGCC 2 cut(s) 125, 340
HapII CCGG 1 cut(s) 310
HhaI GCGC 2 cut(s) 29, 121
Hin1II CATG 3 cut(s) 67, 76, 305
Hin6I GCGC 2 cut(s) 27, 119
HinP1I GCGC 2 cut(s) 27, 119
HindIII AAGCTT 1 cut(s) 244
HinfI GANTC 2 cut(s) 142, 313
HpaII CCGG 1 cut(s) 310
Hpy188III TCNNGA 5 cut(s) 139, 146, 210, 302, 310
HpyF10VI GCNNNNNNNGC 5 cut(s) 33, 131, 176, 204, 270
HpyF3I CTNAG 2 cut(s) 51, 247
Hsp92II CATG 3 cut(s) 67, 76, 305
HspAI GCGC 2 cut(s) 27, 119
Kpn2I TCCGGA 1 cut(s) 309
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 1 cut(s) 195
LpnPI CCDG 4 cut(s) 38, 131, 161, 323
Lsp1109I GCAGC 1 cut(s) 216
MaeI CTAG 1 cut(s) 255
MalI GATC 1 cut(s) 174
MbiI CCGCTC 1 cut(s) 164
MboI GATC 1 cut(s) 172
MboII GAAGA 1 cut(s) 319
MhlI GDGCHC 3 cut(s) 59, 159, 200
MnlI CCTC 6 cut(s) 33, 40, 54, 60, 113, 177
MroI TCCGGA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 62
MspI CCGG 1 cut(s) 310
MvnI CGCG 2 cut(s) 27, 121
MwoI GCNNNNNNNGC 5 cut(s) 33, 131, 176, 204, 270
NdeII GATC 1 cut(s) 172
NlaIII CATG 3 cut(s) 67, 76, 305
PaeR7I CTCGAG 2 cut(s) 199, 208
PagI TCATGA 1 cut(s) 301
PcsI WCGNNNNNNNCGW 1 cut(s) 206
PfeI GAWTC 2 cut(s) 142, 313
PkrI GCNGC 4 cut(s) 166, 169, 181, 206
Psp124BI GAGCTC 1 cut(s) 200
PspPI GGNCC 1 cut(s) 123
PspXI VCTCGAGB 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 62
SacI GAGCTC 1 cut(s) 200
SatI GCNGC 4 cut(s) 165, 168, 180, 205
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 1 cut(s) 123
SduI GDGCHC 3 cut(s) 59, 159, 200
SetI ASST 4 cut(s) 200, 209, 248, 260
Sfr274I CTCGAG 2 cut(s) 199, 208
SlaI CTCGAG 2 cut(s) 199, 208
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 3 cut(s) 199, 208, 259
SmoI CTYRAG 3 cut(s) 199, 208, 259
SsiI CCGC 6 cut(s) 109, 121, 164, 167, 170, 179
SspMI CTAG 1 cut(s) 255
SstI GAGCTC 1 cut(s) 200
TaqI TCGA 3 cut(s) 153, 200, 209
TauI GCSGC 3 cut(s) 167, 170, 182
TfiI GAWTC 2 cut(s) 142, 313
TseI GCWGC 1 cut(s) 204
TspDTI ATGAA 4 cut(s) 89, 230, 319, 323
TspGWI ACGGA 1 cut(s) 208
XhoI CTCGAG 2 cut(s) 199, 208
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.