Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0008886

Physical Location & Seq

Genomic Coordinates Forward (+)

16982241 .. 16983044

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1107700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGCCTCTAAAGTATCTAAATAAGATGGTTTGGATCCTCTGCAACGACTGTGGAGAAATATCTGAGGTCAATTTTCACATTGTGGGACACAAGTGCCTCAAGTGCAAATCCTACAATACAAGGAGAACACGAGGAGGGCCAGCATCATGCTCGTCAAGGATTACTGCAACGATGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko05162 map04115 map04120 map05162

Pfam Domains

Protein Families

zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

60

Amino Acids

6.72

Weight (kDa)

9.6

Isoelectric Point (pI)

64.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zinc_ribbon_6	PF14599	1 - 41	2.3e-19	Zinc-ribbon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0008886)

Species	Orthologous Gene IDs
malus_domestica	MD04G1089300.v1.1 MD12G1107700.v1.1
pyrus_communis	pycom04g08370
rosa_laevigata	RLG00000003447 RLG00000033932 RLG00000035274
rosa_multiflora	Rmu_co8224918.1_g000001 Rmu_sc0002460.1_g000039 Rmu_sc0005446.1_g000013 Rmu_sc0009617.1_g000009
rosa_samantha	Rh1BG137900 Rh1CG053500 Rh1CG053600 Rh1DG057700 Rh1DG057800 Rh3BG059100 Rh3CG058300 Rh3DG059600 Rh5BG241200 Rh5BG293200 Rh7AG232600 Rh7BG208700 Rh7BG208800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	28, 41
AdeI	CACNNNGTG	1 cut(s)	82
AlwI	GGATC	2 cut(s)	28, 41
AoxI	GGCC	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	137
BamHI	GGATCC	1 cut(s)	33
BauI	CACGAG	1 cut(s)	129
BccI	CCATC	1 cut(s)	19
BcgI	CGANNNNNNTGC	2 cut(s)	132, 166
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	35
BmsI	GCATC	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	54
BseRI	GAGGAG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	139
BslFI	GGGAC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	99
BsnI	GGCC	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	33
BspANI	GGCC	1 cut(s)	139
BspCNI	CTCAG	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	35
BspPI	GGATC	2 cut(s)	28, 41
BssMI	GATC	1 cut(s)	33
BssSI	CACGAG	1 cut(s)	129
Bst2BI	CACGAG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	63
BstKTI	GATC	1 cut(s)	36
BstMBI	GATC	1 cut(s)	33
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	137
CspCI	CAANNNNNGTGG	2 cut(s)	31, 66
CviAII	CATG	1 cut(s)	147
CviJI	RGCY	1 cut(s)	139
CviKI_1	RGCY	1 cut(s)	139
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
DraIII	CACNNNGTG	1 cut(s)	82
FaeI	CATG	1 cut(s)	150
FaiI	YATR	1 cut(s)	148
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	139
Hin1II	CATG	1 cut(s)	150
Hpy188I	TCNGA	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4V	TGCA	3 cut(s)	42, 105, 167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	33
LpnPI	CCDG	1 cut(s)	153
LweI	GCATC	1 cut(s)	152
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MflI	RGATCY	1 cut(s)	33
MluCI	AATT	1 cut(s)	70
MnlI	CCTC	7 cut(s)	15, 47, 58, 107, 125, 128, 168
MwoI	GCNNNNNNNGC	1 cut(s)	102
NdeII	GATC	1 cut(s)	33
NlaIII	CATG	1 cut(s)	150
NlaIV	GGNNCC	1 cut(s)	35
PspN4I	GGNNCC	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	33
Sau96I	GGNCC	1 cut(s)	137
SetI	ASST	2 cut(s)	69, 179
SfaNI	GCATC	1 cut(s)	152
SgeI	CNNG	9 cut(s)	103, 112, 132, 141, 143, 152, 159, 163, 168
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	1 cut(s)	70
TaaI	ACNGT	1 cut(s)	50
TasI	AATT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.