Rh7BG208700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0008886
Physical Location & Seq
Forward (+)
17623012 .. 17623386
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG208700.1

Sequence Viewer

Length: 246 bp
ATGGGTATGGCGTTTCCATCTCCATCTCCTCGCGCTTCTCGCTCTAGTCCTCGTCCTCAGGGCACGAGCACGACGACCTGCCCCGACTCTCCCTCGATTCGGACAAACAGATGCCGAACCCAATGTTCTCCCTCCACCGCAAGACGGCGCGAGCCAAAACGGCAGTCAAGATTCAGGAAATCGAGCAAAGAGCGGCGGCGGATCAGGCGGCGAGGGTGGGACGGAGCTCGAGCAGCCCGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.29

Weight (kDa)

12.0

Isoelectric Point (pI)

123.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 86
AccBSI CCGCTC 1 cut(s) 193
AccII CGCG 2 cut(s) 33, 150
AciI CCGC 5 cut(s) 138, 193, 196, 199, 208
AclWI GGATC 1 cut(s) 209
AfiI CCNNNNNNNGG 2 cut(s) 99, 144
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
Alw21I GWGCWC 2 cut(s) 71, 229
AlwI GGATC 1 cut(s) 209
Ama87I CYCGRG 2 cut(s) 228, 237
ApeKI GCWGC 1 cut(s) 233
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
AspLEI GCGC 2 cut(s) 35, 150
AvaI CYCGRG 2 cut(s) 228, 237
AxyI CCTNAGG 1 cut(s) 57
BaeGI GKGCMC 1 cut(s) 65
BanII GRGCYC 1 cut(s) 229
BauI CACGAG 1 cut(s) 64
Bbv12I GWGCWC 2 cut(s) 71, 229
BccI CCATC 2 cut(s) 25, 31
BceAI ACGGC 2 cut(s) 161, 176
BfaI CTAG 1 cut(s) 45
BfuAI ACCTGC 1 cut(s) 86
BglI GCCNNNNNGGC 1 cut(s) 160
BisI GCNGC 4 cut(s) 194, 197, 209, 234
BlsI GCNGC 4 cut(s) 195, 198, 210, 235
BmeT110I CYCGRG 2 cut(s) 228, 237
BmsI GCATC 1 cut(s) 101
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 144
Bse21I CCTNAGG 1 cut(s) 57
BseLI CCNNNNNNNGG 2 cut(s) 99, 144
BseMII CTCAG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 18
BseSI GKGCMC 1 cut(s) 65
Bsh1236I CGCG 2 cut(s) 33, 150
BsiHKAI GWGCWC 2 cut(s) 71, 229
BsiHKCI CYCGRG 2 cut(s) 228, 237
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 2 cut(s) 99, 144
BsmFI GGGAC 1 cut(s) 233
BsoBI CYCGRG 2 cut(s) 228, 237
Bsp1286I GDGCHC 3 cut(s) 65, 71, 229
Bsp143I GATC 1 cut(s) 201
BspACI CCGC 5 cut(s) 138, 193, 196, 199, 208
BspCNI CTCAG 1 cut(s) 70
BspFNI CGCG 2 cut(s) 33, 150
BspMI ACCTGC 1 cut(s) 86
BspPI GGATC 1 cut(s) 209
BsrBI CCGCTC 1 cut(s) 193
BssMI GATC 1 cut(s) 201
BssSI CACGAG 1 cut(s) 64
Bst2BI CACGAG 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 57
BstFNI CGCG 2 cut(s) 33, 150
BstHHI GCGC 2 cut(s) 35, 150
BstKTI GATC 1 cut(s) 204
BstMBI GATC 1 cut(s) 201
BstMWI GCNNNNNNNGC 4 cut(s) 39, 160, 205, 233
BstSLI GKGCMC 1 cut(s) 65
BstUI CGCG 2 cut(s) 33, 150
Bsu36I CCTNAGG 1 cut(s) 57
BveI ACCTGC 1 cut(s) 86
Cac8I GCNNGC 1 cut(s) 152
CfoI GCGC 2 cut(s) 35, 150
CviJI RGCY 3 cut(s) 154, 227, 236
CviKI_1 RGCY 3 cut(s) 154, 227, 236
DdeI CTNAG 1 cut(s) 57
DpnI GATC 1 cut(s) 203
DpnII GATC 1 cut(s) 201
EciI GGCGGA 1 cut(s) 214
Ecl136II GAGCTC 1 cut(s) 227
Eco24I GRGCYC 1 cut(s) 229
Eco53kI GAGCTC 1 cut(s) 227
Eco81I CCTNAGG 1 cut(s) 57
Eco88I CYCGRG 2 cut(s) 228, 237
EcoICRI GAGCTC 1 cut(s) 227
EcoT38I GRGCYC 1 cut(s) 229
FaiI YATR 1 cut(s) 8
FaqI GGGAC 1 cut(s) 233
Fnu4HI GCNGC 4 cut(s) 194, 197, 209, 234
FriOI GRGCYC 1 cut(s) 229
Fsp4HI GCNGC 4 cut(s) 194, 197, 209, 234
FspBI CTAG 1 cut(s) 45
GlaI GCGC 2 cut(s) 34, 149
GluI GCNGC 4 cut(s) 194, 197, 209, 234
HhaI GCGC 2 cut(s) 35, 150
Hin6I GCGC 2 cut(s) 33, 148
HinP1I GCGC 2 cut(s) 33, 148
HinfI GANTC 3 cut(s) 86, 97, 171
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 2 cut(s) 168, 175
Hpy99I CGWCG 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 160, 205, 233
HpyF3I CTNAG 1 cut(s) 57
HspAI GCGC 2 cut(s) 33, 148
Kzo9I GATC 1 cut(s) 201
LmnI GCTCC 1 cut(s) 224
LpnPI CCDG 4 cut(s) 44, 91, 160, 190
LweI GCATC 1 cut(s) 101
MaeI CTAG 1 cut(s) 45
MalI GATC 1 cut(s) 203
MbiI CCGCTC 1 cut(s) 193
MboI GATC 1 cut(s) 201
MhlI GDGCHC 3 cut(s) 65, 71, 229
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 6 cut(s) 39, 60, 66, 103, 142, 206
MvnI CGCG 2 cut(s) 33, 150
MwoI GCNNNNNNNGC 4 cut(s) 39, 160, 205, 233
NdeII GATC 1 cut(s) 201
PaeR7I CTCGAG 1 cut(s) 228
PcsI WCGNNNNNNNCGW 2 cut(s) 71, 235
PfeI GAWTC 2 cut(s) 97, 171
PkrI GCNGC 4 cut(s) 195, 198, 210, 235
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
Psp124BI GAGCTC 1 cut(s) 229
PspXI VCTCGAGB 1 cut(s) 228
SacI GAGCTC 1 cut(s) 229
SatI GCNGC 4 cut(s) 194, 197, 209, 234
Sau3AI GATC 1 cut(s) 201
SchI GAGTC 1 cut(s) 80
SduI GDGCHC 3 cut(s) 65, 71, 229
SetI ASST 2 cut(s) 80, 229
SfaNI GCATC 1 cut(s) 101
Sfr274I CTCGAG 1 cut(s) 228
SlaI CTCGAG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 228
SmoI CTYRAG 1 cut(s) 228
SsiI CCGC 5 cut(s) 138, 193, 196, 199, 208
SspMI CTAG 1 cut(s) 45
SstI GAGCTC 1 cut(s) 229
TaqI TCGA 3 cut(s) 95, 182, 229
TauI GCSGC 3 cut(s) 196, 199, 211
TfiI GAWTC 2 cut(s) 97, 171
TseI GCWGC 1 cut(s) 233
TspGWI ACGGA 1 cut(s) 237
XhoI CTCGAG 1 cut(s) 228
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.