Rh3DG059600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0008886
Physical Location & Seq
Reverse (-)
4039458 .. 4039835
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG059600.1

Sequence Viewer

Length: 378 bp
ATGGGTATGGCAATTTCCATCTCCTCGCTCATCTCGCTCTCGTCCTCGTCCTTAGGGAACGAGCACGACGACCTGCCCCGACTCTCCCTGGATTCGGACAAACCGAACCCGAACCCAATGTTCTCCCTACACCGCAAGACTGCGTGGGCCAAAACGGCAGTCAAGATTCAGGAAATCAAGCAGATAGCAGCAACGGGTCAAGCGGCGAGGGTGGGATGGAGCTCGAGCAGCCCGAGAATGAACTCGTCGGGGAAAATAGTGTTCCAAAGCTTAGAGCGTAGCTCGAGCAGTCCAAGCAGCTTCAATGGTGGGTATGGCGTTTCTCATGATTTCCAGAATCTCACTTCTCTCTTCATTCATAGGCCAAACTATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.63

Weight (kDa)

9.77

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 81
AciI CCGC 2 cut(s) 133, 203
AfiI CCNNNNNNNGG 1 cut(s) 94
AgsI TTSAA 1 cut(s) 304
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 4 cut(s) 222, 270, 282, 300
AluI AGCT 4 cut(s) 222, 270, 282, 300
Alw21I GWGCWC 2 cut(s) 66, 224
Ama87I CYCGRG 3 cut(s) 223, 232, 283
AoxI GGCC 2 cut(s) 147, 362
ApeKI GCWGC 3 cut(s) 188, 228, 297
ArsI GACNNNNNNTTYG 2 cut(s) 144, 176
AspS9I GGNCC 1 cut(s) 147
AvaI CYCGRG 3 cut(s) 223, 232, 283
AxyI CCTNAGG 1 cut(s) 52
BanII GRGCYC 1 cut(s) 224
Bbv12I GWGCWC 2 cut(s) 66, 224
BbvI GCAGC 3 cut(s) 200, 240, 309
BccI CCATC 2 cut(s) 26, 210
BceAI ACGGC 1 cut(s) 171
BciT130I CCWGG 1 cut(s) 89
BfuAI ACCTGC 1 cut(s) 81
BglI GCCNNNNNGGC 1 cut(s) 155
BisI GCNGC 4 cut(s) 189, 204, 229, 298
BlsI GCNGC 4 cut(s) 190, 205, 230, 299
Bme1390I CCNGG 1 cut(s) 89
BmeT110I CYCGRG 3 cut(s) 223, 232, 283
BmgT120I GGNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 89
BplI GAGNNNNNCTC 2 cut(s) 266, 298
BsaJI CCNNGG 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse21I CCTNAGG 1 cut(s) 52
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 1 cut(s) 221
BseLI CCNNNNNNNGG 1 cut(s) 94
BseRI GAGGAG 1 cut(s) 13
BseXI GCAGC 3 cut(s) 200, 240, 309
BshFI GGCC 2 cut(s) 149, 364
BsiHKAI GWGCWC 2 cut(s) 66, 224
BsiHKCI CYCGRG 3 cut(s) 223, 232, 283
BslI CCNNNNNNNGG 1 cut(s) 94
BsnI GGCC 2 cut(s) 149, 364
BsoBI CYCGRG 3 cut(s) 223, 232, 283
Bsp1286I GDGCHC 2 cut(s) 66, 224
BspACI CCGC 2 cut(s) 133, 203
BspANI GGCC 2 cut(s) 149, 364
BspHI TCATGA 1 cut(s) 325
BspMI ACCTGC 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 356
BstDEI CTNAG 2 cut(s) 52, 271
BstF5I GGATG 1 cut(s) 221
BstMWI GCNNNNNNNGC 4 cut(s) 34, 155, 228, 294
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BstV1I GCAGC 3 cut(s) 200, 240, 309
BstXI CCANNNNNNTGG 1 cut(s) 372
Bsu36I CCTNAGG 1 cut(s) 52
BsuRI GGCC 2 cut(s) 149, 364
BtsCI GGATG 1 cut(s) 221
BveI ACCTGC 1 cut(s) 81
CciI TCATGA 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 147
CviAII CATG 1 cut(s) 326
CviJI RGCY 7 cut(s) 149, 222, 231, 270, 282, 300, 364
CviKI_1 RGCY 7 cut(s) 149, 222, 231, 270, 282, 300, 364
DdeI CTNAG 2 cut(s) 52, 271
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
Ecl136II GAGCTC 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 224
Eco53kI GAGCTC 1 cut(s) 222
Eco81I CCTNAGG 1 cut(s) 52
Eco88I CYCGRG 3 cut(s) 223, 232, 283
EcoICRI GAGCTC 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 224
FaeI CATG 1 cut(s) 329
FaiI YATR 4 cut(s) 8, 315, 327, 360
FatI CATG 1 cut(s) 325
Fnu4HI GCNGC 4 cut(s) 189, 204, 229, 298
FokI GGATG 1 cut(s) 228
FriOI GRGCYC 1 cut(s) 224
Fsp4HI GCNGC 4 cut(s) 189, 204, 229, 298
GluI GCNGC 4 cut(s) 189, 204, 229, 298
HaeIII GGCC 2 cut(s) 149, 364
Hin1II CATG 1 cut(s) 329
HindIII AAGCTT 1 cut(s) 268
HinfI GANTC 4 cut(s) 81, 92, 166, 337
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 4 cut(s) 163, 170, 326, 334
Hpy99I CGWCG 2 cut(s) 71, 250
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 155, 228, 294
HpyF3I CTNAG 2 cut(s) 52, 271
Hsp92II CATG 1 cut(s) 329
LmnI GCTCC 1 cut(s) 219
LpnPI CCDG 5 cut(s) 74, 86, 101, 155, 347
Lsp1109I GCAGC 3 cut(s) 200, 240, 309
MboII GAAGA 1 cut(s) 343
MhlI GDGCHC 2 cut(s) 66, 224
MluCI AATT 1 cut(s) 12
MlyI GAGTC 1 cut(s) 75
MnlI CCTC 3 cut(s) 34, 55, 201
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 4 cut(s) 34, 155, 228, 294
NlaIII CATG 1 cut(s) 329
PaeR7I CTCGAG 2 cut(s) 223, 283
PagI TCATGA 1 cut(s) 325
PcsI WCGNNNNNNNCGW 3 cut(s) 66, 101, 230
PfeI GAWTC 3 cut(s) 92, 166, 337
PkrI GCNGC 4 cut(s) 190, 205, 230, 299
PleI GAGTC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 75
Psp124BI GAGCTC 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspPI GGNCC 1 cut(s) 147
PspXI VCTCGAGB 2 cut(s) 223, 283
SacI GAGCTC 1 cut(s) 224
SatI GCNGC 4 cut(s) 189, 204, 229, 298
Sau96I GGNCC 1 cut(s) 147
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 2 cut(s) 66, 224
SetI ASST 5 cut(s) 75, 224, 272, 284, 302
Sfr274I CTCGAG 2 cut(s) 223, 283
SlaI CTCGAG 2 cut(s) 223, 283
SmlI CTYRAG 2 cut(s) 223, 283
SmoI CTYRAG 2 cut(s) 223, 283
Sse9I AATT 1 cut(s) 12
SsiI CCGC 2 cut(s) 133, 203
SstI GAGCTC 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 87
TaqI TCGA 2 cut(s) 224, 284
TasI AATT 1 cut(s) 12
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 3 cut(s) 92, 166, 337
TseI GCWGC 3 cut(s) 188, 228, 297
TspDTI ATGAA 3 cut(s) 254, 343, 347
XhoI CTCGAG 2 cut(s) 223, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.