Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0008886

Physical Location & Seq

Genomic Coordinates Reverse (-)

9933476 .. 9933762

Gene Structure 287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG053600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 287 bp

ATGGTGTTTCCATCTCCATCTCCTCGCGCCTCTTGCTCTCGTCCTCGTCCTCAGGGCACGAGCATGATGACCATGAAAGCGAACCCGAACCCAATGTTCTCCCTCCACCGCAAAACGGCGCGGGCCAAAACGGCAGTCAAGATTCAGGAAATCGAGCACAGAGCGGCGGCGGATCAGGCGGCGAGGGTGGGACGGAGCTCGAGCAGCTCGAGAATGAACTCGTTGGGGAAAATGGTGTTCCAAAGCTTAGAGCCTAGCTCAAGCAGTCCAAGCAACTTCAATGGTGG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

95

Amino Acids

10.28

Weight (kDa)

11.72

Isoelectric Point (pI)

72.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008886)

Species	Orthologous Gene IDs
malus_domestica	MD04G1089300.v1.1 MD12G1107700.v1.1
pyrus_communis	pycom04g08370
rosa_laevigata	RLG00000003447 RLG00000033932 RLG00000035274
rosa_multiflora	Rmu_co8224918.1_g000001 Rmu_sc0002460.1_g000039 Rmu_sc0005446.1_g000013 Rmu_sc0009617.1_g000009
rosa_samantha	Rh1BG137900 Rh1CG053500 Rh1CG053600 Rh1DG057700 Rh1DG057800 Rh3BG059100 Rh3CG058300 Rh3DG059600 Rh5BG241200 Rh5BG293200 Rh7AG232600 Rh7BG208700 Rh7BG208800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	164
AccII	CGCG	2 cut(s)	27, 121
AciI	CCGC	6 cut(s)	109, 121, 164, 167, 170, 179
AclWI	GGATC	1 cut(s)	180
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	280
AluBI	AGCT	4 cut(s)	198, 207, 246, 258
AluI	AGCT	4 cut(s)	198, 207, 246, 258
Alw21I	GWGCWC	2 cut(s)	159, 200
AlwI	GGATC	1 cut(s)	180
Ama87I	CYCGRG	2 cut(s)	199, 208
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	1 cut(s)	204
ArsI	GACNNNNNNTTYG	2 cut(s)	120, 152
AspLEI	GCGC	2 cut(s)	29, 121
AspS9I	GGNCC	1 cut(s)	123
AvaI	CYCGRG	2 cut(s)	199, 208
AxyI	CCTNAGG	1 cut(s)	51
BaeGI	GKGCMC	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	200
BauI	CACGAG	1 cut(s)	58
Bbv12I	GWGCWC	2 cut(s)	159, 200
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	2 cut(s)	19, 25
BceAI	ACGGC	2 cut(s)	132, 147
BfaI	CTAG	1 cut(s)	255
BglI	GCCNNNNNGGC	1 cut(s)	131
BisI	GCNGC	4 cut(s)	165, 168, 180, 205
BlsI	GCNGC	4 cut(s)	166, 169, 181, 206
BmeT110I	CYCGRG	2 cut(s)	199, 208
BmgT120I	GGNCC	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
BpuEI	CTTGAG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse21I	CCTNAGG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	12
BseSI	GKGCMC	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	216
Bsh1236I	CGCG	2 cut(s)	27, 121
BshFI	GGCC	1 cut(s)	125
BsiHKAI	GWGCWC	2 cut(s)	159, 200
BsiHKCI	CYCGRG	2 cut(s)	199, 208
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	204
BsnI	GGCC	1 cut(s)	125
BsoBI	CYCGRG	2 cut(s)	199, 208
Bsp1286I	GDGCHC	3 cut(s)	59, 159, 200
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	6 cut(s)	109, 121, 164, 167, 170, 179
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	1 cut(s)	64
BspFNI	CGCG	2 cut(s)	27, 121
BspPI	GGATC	1 cut(s)	180
BsrBI	CCGCTC	1 cut(s)	164
BssMI	GATC	1 cut(s)	172
BssSI	CACGAG	1 cut(s)	58
Bst2BI	CACGAG	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	2 cut(s)	51, 247
BstFNI	CGCG	2 cut(s)	27, 121
BstHHI	GCGC	2 cut(s)	29, 121
BstKTI	GATC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	5 cut(s)	33, 131, 176, 204, 270
BstSLI	GKGCMC	1 cut(s)	59
BstUI	CGCG	2 cut(s)	27, 121
BstV1I	GCAGC	1 cut(s)	216
Bsu36I	CCTNAGG	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	125
Cac8I	GCNNGC	1 cut(s)	123
CfoI	GCGC	2 cut(s)	29, 121
Cfr13I	GGNCC	1 cut(s)	123
CviAII	CATG	2 cut(s)	64, 73
CviJI	RGCY	6 cut(s)	125, 198, 207, 246, 253, 258
CviKI_1	RGCY	6 cut(s)	125, 198, 207, 246, 253, 258
DdeI	CTNAG	2 cut(s)	51, 247
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
EciI	GGCGGA	1 cut(s)	185
Ecl136II	GAGCTC	1 cut(s)	198
Eco24I	GRGCYC	1 cut(s)	200
Eco53kI	GAGCTC	1 cut(s)	198
Eco81I	CCTNAGG	1 cut(s)	51
Eco88I	CYCGRG	2 cut(s)	199, 208
EcoICRI	GAGCTC	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	200
FaeI	CATG	2 cut(s)	67, 76
FaiI	YATR	2 cut(s)	65, 74
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	2 cut(s)	63, 72
FauI	CCCGC	1 cut(s)	114
Fnu4HI	GCNGC	4 cut(s)	165, 168, 180, 205
FriOI	GRGCYC	1 cut(s)	200
Fsp4HI	GCNGC	4 cut(s)	165, 168, 180, 205
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	2 cut(s)	28, 120
GluI	GCNGC	4 cut(s)	165, 168, 180, 205
HaeIII	GGCC	1 cut(s)	125
HhaI	GCGC	2 cut(s)	29, 121
Hin1II	CATG	2 cut(s)	67, 76
Hin6I	GCGC	2 cut(s)	27, 119
HinP1I	GCGC	2 cut(s)	27, 119
HindIII	AAGCTT	1 cut(s)	244
HinfI	GANTC	1 cut(s)	142
Hpy188III	TCNNGA	3 cut(s)	139, 146, 210
HpyF10VI	GCNNNNNNNGC	5 cut(s)	33, 131, 176, 204, 270
HpyF3I	CTNAG	2 cut(s)	51, 247
Hsp92II	CATG	2 cut(s)	67, 76
HspAI	GCGC	2 cut(s)	27, 119
Kzo9I	GATC	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	195
LpnPI	CCDG	3 cut(s)	38, 131, 161
Lsp1109I	GCAGC	1 cut(s)	216
MaeI	CTAG	1 cut(s)	255
MalI	GATC	1 cut(s)	174
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	1 cut(s)	172
MhlI	GDGCHC	3 cut(s)	59, 159, 200
MnlI	CCTC	6 cut(s)	33, 40, 54, 60, 113, 177
MslI	CAYNNNNRTG	1 cut(s)	62
MvnI	CGCG	2 cut(s)	27, 121
MwoI	GCNNNNNNNGC	5 cut(s)	33, 131, 176, 204, 270
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	2 cut(s)	67, 76
PaeR7I	CTCGAG	2 cut(s)	199, 208
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	142
PkrI	GCNGC	4 cut(s)	166, 169, 181, 206
Psp124BI	GAGCTC	1 cut(s)	200
PspPI	GGNCC	1 cut(s)	123
PspXI	VCTCGAGB	1 cut(s)	199
RseI	CAYNNNNRTG	1 cut(s)	62
SacI	GAGCTC	1 cut(s)	200
SatI	GCNGC	4 cut(s)	165, 168, 180, 205
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	1 cut(s)	123
SduI	GDGCHC	3 cut(s)	59, 159, 200
SetI	ASST	4 cut(s)	200, 209, 248, 260
Sfr274I	CTCGAG	2 cut(s)	199, 208
SlaI	CTCGAG	2 cut(s)	199, 208
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	3 cut(s)	199, 208, 259
SmoI	CTYRAG	3 cut(s)	199, 208, 259
SsiI	CCGC	6 cut(s)	109, 121, 164, 167, 170, 179
SspMI	CTAG	1 cut(s)	255
SstI	GAGCTC	1 cut(s)	200
TaqI	TCGA	3 cut(s)	153, 200, 209
TauI	GCSGC	3 cut(s)	167, 170, 182
TfiI	GAWTC	1 cut(s)	142
TseI	GCWGC	1 cut(s)	204
TspDTI	ATGAA	2 cut(s)	89, 230
TspGWI	ACGGA	1 cut(s)	208
XhoI	CTCGAG	2 cut(s)	199, 208
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.