RLG00000035274

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008886
Physical Location & Seq
Reverse (-)
63987996 .. 63988897
902 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035274

Sequence Viewer

Length: 495 bp
ATGTTCTCCCTCCATCGCAAGACCGCGCGGGCCAAAACGGCAGTCAAGATTCAGGAAATTGAGCAGAGAGCGGCGGCGGATCAGGTGGTGAAGGTGGGACGGAGCTCGAGCAGCCCGAGAATGAACTCGTCGGGGAAAATAGTGTTCCAAAGCTTAGAGCATAGCTTGAGCCAAACTATTGGTGAGGTTGGAATGCGGTGTTTTGATGGCAATGTTCATGATGCAGATGGTGGTGTTGATGTTGAGTTGTGTTGTGTAGAGCTGCTGGGCGAGAGAGTGAAGGAAGAGATTGACATGTCTAGAACCTGGAAGAAAATAGATGAAGAGATTGAAGCCACTGTCATGCCCGAGGATTACCGGAATAACAATGTTTGGATCTTGTGCAATGACTGCAATGACACAACTGAAGTTTACTTCCACATTATTGGCCAGAAATGCAGCCACTGCAAATTATACAACACCTACACAATTGCCCCTCTAGTTCTTCCTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000731 GO:0002039 GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019941 GO:0019985 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031347 GO:0031348 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032102 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045862 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0090304 GO:0140096 GO:1900424 GO:1900425 GO:1901360 GO:1901362 GO:1901483 GO:1901485 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-C3HC4 zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

165

Amino Acids

18.51

Weight (kDa)

5.54

Isoelectric Point (pI)

43.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zinc_ribbon_6 PF14599 97 - 154 2.2e-25 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 71
AccII CGCG 2 cut(s) 26, 28
AciI CCGC 6 cut(s) 24, 28, 71, 74, 77, 196
AclWI GGATC 2 cut(s) 87, 383
AcoI YGGCCR 1 cut(s) 427
AcuI CTGAAG 1 cut(s) 426
AflIII ACRYGT 1 cut(s) 294
AgsI TTSAA 1 cut(s) 332
AjnI CCWGG 1 cut(s) 305
AluBI AGCT 4 cut(s) 105, 153, 165, 262
AluI AGCT 4 cut(s) 105, 153, 165, 262
Alw21I GWGCWC 1 cut(s) 107
AlwI GGATC 2 cut(s) 87, 383
AlwNI CAGNNNCTG 1 cut(s) 444
Ama87I CYCGRG 3 cut(s) 106, 115, 347
AoxI GGCC 2 cut(s) 30, 427
ApeKI GCWGC 3 cut(s) 111, 262, 438
ArsI GACNNNNNNTTYG 2 cut(s) 27, 59
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 30
AsuHPI GGTGA 2 cut(s) 100, 194
AvaI CYCGRG 3 cut(s) 106, 115, 347
BalI TGGCCA 1 cut(s) 429
BanII GRGCYC 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 107
BbvI GCAGC 3 cut(s) 123, 249, 450
BccI CCATC 3 cut(s) 21, 200, 221
BceAI ACGGC 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 307
BfaI CTAG 2 cut(s) 300, 479
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 5 cut(s) 72, 75, 112, 263, 439
BlsI GCNGC 5 cut(s) 73, 76, 113, 264, 440
Bme1390I CCNGG 1 cut(s) 307
BmeT110I CYCGRG 3 cut(s) 106, 115, 347
BmgT120I GGNCC 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 307
BmsI GCATC 1 cut(s) 211
BpuEI CTTGAG 1 cut(s) 187
BsaJI CCNNGG 1 cut(s) 348
BsaWI WCCGGW 1 cut(s) 357
Bse3DI GCAATG 3 cut(s) 217, 391, 400
BseBI CCWGG 1 cut(s) 307
BseDI CCNNGG 1 cut(s) 348
BseMI GCAATG 3 cut(s) 217, 391, 400
BseXI GCAGC 3 cut(s) 123, 249, 450
BseYI CCCAGC 1 cut(s) 265
Bsh1236I CGCG 2 cut(s) 26, 28
BshFI GGCC 2 cut(s) 32, 429
BsiHKAI GWGCWC 1 cut(s) 107
BsiHKCI CYCGRG 3 cut(s) 106, 115, 347
BsiSI CCGG 1 cut(s) 358
BslFI GGGAC 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 111
BsmI GAATGC 1 cut(s) 198
BsnI GGCC 2 cut(s) 32, 429
BsoBI CYCGRG 3 cut(s) 106, 115, 347
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 2 cut(s) 79, 375
BspACI CCGC 6 cut(s) 24, 28, 71, 74, 77, 196
BspANI GGCC 2 cut(s) 32, 429
BspFNI CGCG 2 cut(s) 26, 28
BspHI TCATGA 1 cut(s) 217
BspPI GGATC 2 cut(s) 87, 383
BsrBI CCGCTC 1 cut(s) 71
BsrDI GCAATG 3 cut(s) 217, 391, 400
BssECI CCNNGG 1 cut(s) 348
BssMI GATC 2 cut(s) 79, 375
Bst2UI CCWGG 1 cut(s) 307
Bst4CI ACNGT 1 cut(s) 340
Bst6I CTCTTC 2 cut(s) 279, 318
BstAPI GCANNNNNTGC 2 cut(s) 390, 444
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 154
BstFNI CGCG 2 cut(s) 26, 28
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 2 cut(s) 82, 378
BstMBI GATC 2 cut(s) 79, 375
BstMWI GCNNNNNNNGC 5 cut(s) 38, 111, 390, 435, 444
BstNI CCWGG 1 cut(s) 307
BstNSI RCATGY 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 305
BstUI CGCG 2 cut(s) 26, 28
BstV1I GCAGC 3 cut(s) 123, 249, 450
BstX2I RGATCY 1 cut(s) 375
BstXI CCANNNNNNTGG 2 cut(s) 179, 425
BstYI RGATCY 1 cut(s) 375
BsuRI GGCC 2 cut(s) 32, 429
BtsI GCAGTG 1 cut(s) 442
BtsIMutI CAGTG 2 cut(s) 336, 442
Cac8I GCNNGC 1 cut(s) 30
CaiI CAGNNNCTG 1 cut(s) 444
CciI TCATGA 1 cut(s) 217
CfoI GCGC 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 30
CviAII CATG 3 cut(s) 218, 295, 343
DdeI CTNAG 1 cut(s) 154
DpnI GATC 2 cut(s) 81, 377
DpnII GATC 2 cut(s) 79, 375
EaeI YGGCCR 1 cut(s) 427
Eam1104I CTCTTC 2 cut(s) 279, 318
EarI CTCTTC 2 cut(s) 279, 318
EciI GGCGGA 1 cut(s) 92
Ecl136II GAGCTC 1 cut(s) 105
Eco24I GRGCYC 1 cut(s) 107
Eco53kI GAGCTC 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 426
Eco88I CYCGRG 3 cut(s) 106, 115, 347
EcoICRI GAGCTC 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 305
EcoT38I GRGCYC 1 cut(s) 107
FaeI CATG 3 cut(s) 221, 298, 346
FaiI YATR 5 cut(s) 162, 219, 296, 344, 454
FaqI GGGAC 1 cut(s) 111
FatI CATG 3 cut(s) 217, 294, 342
FauI CCCGC 1 cut(s) 21
Fnu4HI GCNGC 5 cut(s) 72, 75, 112, 263, 439
FriOI GRGCYC 1 cut(s) 107
Fsp4HI GCNGC 5 cut(s) 72, 75, 112, 263, 439
FspBI CTAG 2 cut(s) 300, 479
GlaI GCGC 1 cut(s) 27
GluI GCNGC 5 cut(s) 72, 75, 112, 263, 439
GsaI CCCAGC 1 cut(s) 269
HaeIII GGCC 2 cut(s) 32, 429
HapII CCGG 1 cut(s) 358
HhaI GCGC 1 cut(s) 28
Hin1II CATG 3 cut(s) 221, 298, 346
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HindIII AAGCTT 1 cut(s) 151
HinfI GANTC 1 cut(s) 49
HpaII CCGG 1 cut(s) 358
HphI GGTGA 2 cut(s) 100, 194
Hpy166II GTNNAC 1 cut(s) 412
Hpy188III TCNNGA 4 cut(s) 46, 53, 218, 300
Hpy8I GTNNAC 1 cut(s) 412
Hpy99I CGWCG 1 cut(s) 133
HpyAV CCTTC 2 cut(s) 85, 274
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4V TGCA 5 cut(s) 224, 384, 393, 438, 447
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 111, 390, 435, 444
HpyF3I CTNAG 1 cut(s) 154
Hsp92II CATG 3 cut(s) 221, 298, 346
HspAI GCGC 1 cut(s) 26
Kzo9I GATC 2 cut(s) 79, 375
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 7 cut(s) 38, 68, 251, 292, 319, 371, 443
Lsp1109I GCAGC 3 cut(s) 123, 249, 450
LweI GCATC 1 cut(s) 211
MaeI CTAG 2 cut(s) 300, 479
MalI GATC 2 cut(s) 81, 377
MbiI CCGCTC 1 cut(s) 71
MboI GATC 2 cut(s) 79, 375
MboII GAAGA 4 cut(s) 296, 322, 335, 476
MfeI CAATTG 1 cut(s) 468
MflI RGATCY 1 cut(s) 375
MhlI GDGCHC 1 cut(s) 107
MlsI TGGCCA 1 cut(s) 429
MluCI AATT 3 cut(s) 57, 449, 468
MluNI TGGCCA 1 cut(s) 429
MmeI TCCRAC 1 cut(s) 169
MnlI CCTC 4 cut(s) 20, 178, 343, 486
Mox20I TGGCCA 1 cut(s) 429
MscI TGGCCA 1 cut(s) 429
MslI CAYNNNNRTG 1 cut(s) 341
Msp20I TGGCCA 1 cut(s) 429
MspI CCGG 1 cut(s) 358
MspR9I CCNGG 1 cut(s) 307
MunI CAATTG 1 cut(s) 468
Mva1269I GAATGC 1 cut(s) 198
MvaI CCWGG 1 cut(s) 307
MvnI CGCG 2 cut(s) 26, 28
MwoI GCNNNNNNNGC 5 cut(s) 38, 111, 390, 435, 444
NdeII GATC 2 cut(s) 79, 375
NlaIII CATG 3 cut(s) 221, 298, 346
NspI RCATGY 1 cut(s) 298
PaeR7I CTCGAG 1 cut(s) 106
PagI TCATGA 1 cut(s) 217
PciI ACATGT 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PctI GAATGC 1 cut(s) 198
PfeI GAWTC 1 cut(s) 49
PkrI GCNGC 5 cut(s) 73, 76, 113, 264, 440
PscI ACATGT 1 cut(s) 294
Psp124BI GAGCTC 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 305
PspFI CCCAGC 1 cut(s) 265
PspGI CCWGG 1 cut(s) 305
PspPI GGNCC 1 cut(s) 30
PspXI VCTCGAGB 1 cut(s) 106
PstNI CAGNNNCTG 1 cut(s) 444
PsuI RGATCY 1 cut(s) 375
RseI CAYNNNNRTG 1 cut(s) 341
SacI GAGCTC 1 cut(s) 107
SatI GCNGC 5 cut(s) 72, 75, 112, 263, 439
Sau3AI GATC 2 cut(s) 79, 375
Sau96I GGNCC 1 cut(s) 30
ScrFI CCNGG 1 cut(s) 307
SduI GDGCHC 1 cut(s) 107
SetI ASST 9 cut(s) 87, 96, 107, 155, 167, 189, 264, 308, 464
SfaNI GCATC 1 cut(s) 211
Sfr274I CTCGAG 1 cut(s) 106
SlaI CTCGAG 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 341
SmlI CTYRAG 2 cut(s) 106, 166
SmoI CTYRAG 2 cut(s) 106, 166
Sse9I AATT 3 cut(s) 57, 449, 468
SsiI CCGC 6 cut(s) 24, 28, 71, 74, 77, 196
SspMI CTAG 2 cut(s) 300, 479
SstI GAGCTC 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 305
TaaI ACNGT 1 cut(s) 340
TaqI TCGA 1 cut(s) 107
TasI AATT 3 cut(s) 57, 449, 468
TauI GCSGC 2 cut(s) 74, 77
TfiI GAWTC 1 cut(s) 49
TscAI CASTG 2 cut(s) 343, 449
TseI GCWGC 3 cut(s) 111, 262, 438
TspDTI ATGAA 3 cut(s) 137, 206, 336
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 2 cut(s) 343, 449
XbaI TCTAGA 1 cut(s) 299
XceI RCATGY 1 cut(s) 298
XhoI CTCGAG 1 cut(s) 106
XspI CTAG 2 cut(s) 300, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.