Rh7BG208800

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0008886
Physical Location & Seq
Forward (+)
17623415 .. 17624101
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG208800.1

Sequence Viewer

Length: 303 bp
ATGCGGTGTTTTGATGGCAATGTTGATGATGCAGATGGTGGTGTTGATGTTGAGTTGCGCTGTGCAGAGCTGCTGGGCGAGAGAGTGAAGGAAGAGATTGACATGTCTAGAACCTGGAAGAAAATAGATGAAGAGATTGAAGCCACTGTTATGCCCGAGGATTACAGGAATAACAATGTTTGGATCCTGTGCAATGACTGCAATGACACAACTGAAGTTTACTTCCACATTATTGGCCAGAAATGCAACCACTGCAAATTATACAACACCTGCACAATTGCCCCTCAAGTTCTTCCTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000731 GO:0002039 GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019941 GO:0019985 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031347 GO:0031348 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032102 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045862 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0090304 GO:0140096 GO:1900424 GO:1900425 GO:1901360 GO:1901362 GO:1901483 GO:1901485 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-C3HC4 zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

100

Amino Acids

11.54

Weight (kDa)

4.44

Isoelectric Point (pI)

48.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zinc_ribbon_6 PF14599 33 - 91 1.4e-25 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 278
Acc36I ACCTGC 1 cut(s) 278
AciI CCGC 1 cut(s) 4
AclWI GGATC 2 cut(s) 178, 191
AcoI YGGCCR 1 cut(s) 235
AcuI CTGAAG 1 cut(s) 234
AflIII ACRYGT 1 cut(s) 102
AgsI TTSAA 1 cut(s) 140
AjnI CCWGG 1 cut(s) 113
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
AlwI GGATC 2 cut(s) 178, 191
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 70
AspLEI GCGC 1 cut(s) 60
AvaI CYCGRG 1 cut(s) 155
BalI TGGCCA 1 cut(s) 237
BamHI GGATCC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 57
BccI CCATC 2 cut(s) 8, 29
BciT130I CCWGG 1 cut(s) 115
BfaI CTAG 1 cut(s) 108
BfuAI ACCTGC 1 cut(s) 278
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
Bme1390I CCNGG 1 cut(s) 115
BmeT110I CYCGRG 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 115
BmsI GCATC 1 cut(s) 19
BpuEI CTTGAG 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 156
Bse3DI GCAATG 3 cut(s) 25, 199, 208
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 1 cut(s) 156
BseMI GCAATG 3 cut(s) 25, 199, 208
BseXI GCAGC 1 cut(s) 57
BseYI CCCAGC 1 cut(s) 73
BsgI GTGCAG 2 cut(s) 84, 256
BshFI GGCC 1 cut(s) 237
BsiHKCI CYCGRG 1 cut(s) 155
BsnI GGCC 1 cut(s) 237
BsoBI CYCGRG 1 cut(s) 155
Bsp143I GATC 1 cut(s) 183
BspACI CCGC 1 cut(s) 4
BspANI GGCC 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 185
BspMI ACCTGC 1 cut(s) 278
BspPI GGATC 2 cut(s) 178, 191
BsrDI GCAATG 3 cut(s) 25, 199, 208
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 115
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 2 cut(s) 87, 126
BstAPI GCANNNNNTGC 2 cut(s) 198, 252
BstHHI GCGC 1 cut(s) 60
BstKTI GATC 1 cut(s) 186
BstMBI GATC 1 cut(s) 183
BstMWI GCNNNNNNNGC 3 cut(s) 198, 243, 252
BstNI CCWGG 1 cut(s) 115
BstNSI RCATGY 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 183
BstXI CCANNNNNNTGG 1 cut(s) 233
BstYI RGATCY 1 cut(s) 183
BsuRI GGCC 1 cut(s) 237
BtsI GCAGTG 1 cut(s) 250
BtsIMutI CAGTG 2 cut(s) 144, 250
BveI ACCTGC 1 cut(s) 278
CfoI GCGC 1 cut(s) 60
CviAII CATG 1 cut(s) 103
CviJI RGCY 3 cut(s) 70, 143, 237
CviKI_1 RGCY 3 cut(s) 70, 143, 237
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
EaeI YGGCCR 1 cut(s) 235
Eam1104I CTCTTC 2 cut(s) 87, 126
EarI CTCTTC 2 cut(s) 87, 126
Eco57I CTGAAG 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 113
FaeI CATG 1 cut(s) 106
FaiI YATR 3 cut(s) 104, 152, 262
FatI CATG 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 71
FspBI CTAG 1 cut(s) 108
GlaI GCGC 1 cut(s) 59
GluI GCNGC 1 cut(s) 71
GsaI CCCAGC 1 cut(s) 77
HaeIII GGCC 1 cut(s) 237
HhaI GCGC 1 cut(s) 60
Hin1II CATG 1 cut(s) 106
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 220
Hpy188III TCNNGA 1 cut(s) 108
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 7 cut(s) 32, 65, 192, 201, 246, 255, 273
HpyF10VI GCNNNNNNNGC 3 cut(s) 198, 243, 252
Hsp92II CATG 1 cut(s) 106
HspAI GCGC 1 cut(s) 58
Kzo9I GATC 1 cut(s) 183
LpnPI CCDG 7 cut(s) 59, 100, 127, 151, 200, 251, 283
Lsp1109I GCAGC 1 cut(s) 57
LweI GCATC 1 cut(s) 19
MaeI CTAG 1 cut(s) 108
MalI GATC 1 cut(s) 185
MboI GATC 1 cut(s) 183
MboII GAAGA 4 cut(s) 104, 130, 143, 284
MfeI CAATTG 1 cut(s) 276
MflI RGATCY 1 cut(s) 183
MlsI TGGCCA 1 cut(s) 237
MluCI AATT 2 cut(s) 257, 276
MluNI TGGCCA 1 cut(s) 237
MnlI CCTC 2 cut(s) 151, 294
Mox20I TGGCCA 1 cut(s) 237
MscI TGGCCA 1 cut(s) 237
MslI CAYNNNNRTG 1 cut(s) 149
Msp20I TGGCCA 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 115
MunI CAATTG 1 cut(s) 276
MvaI CCWGG 1 cut(s) 115
MwoI GCNNNNNNNGC 3 cut(s) 198, 243, 252
NdeII GATC 1 cut(s) 183
NlaIII CATG 1 cut(s) 106
NlaIV GGNNCC 1 cut(s) 185
NspI RCATGY 1 cut(s) 106
PaqCI CACCTGC 1 cut(s) 278
PciI ACATGT 1 cut(s) 102
PkrI GCNGC 1 cut(s) 72
PscI ACATGT 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 113
PspFI CCCAGC 1 cut(s) 73
PspGI CCWGG 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 185
PsuI RGATCY 1 cut(s) 183
RseI CAYNNNNRTG 1 cut(s) 149
SatI GCNGC 1 cut(s) 71
Sau3AI GATC 1 cut(s) 183
ScrFI CCNGG 1 cut(s) 115
SetI ASST 3 cut(s) 72, 116, 272
SfaNI GCATC 1 cut(s) 19
SmiMI CAYNNNNRTG 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
Sse9I AATT 2 cut(s) 257, 276
SsiI CCGC 1 cut(s) 4
SspMI CTAG 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 148
TasI AATT 2 cut(s) 257, 276
TscAI CASTG 2 cut(s) 151, 257
TseI GCWGC 1 cut(s) 70
TspDTI ATGAA 1 cut(s) 144
TspRI CASTG 2 cut(s) 151, 257
XbaI TCTAGA 1 cut(s) 107
XceI RCATGY 1 cut(s) 106
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.