Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005446.1

Orthogroup ID

OG0008886

Physical Location & Seq

Genomic Coordinates Forward (+)

49782 .. 50280

Gene Structure 499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005446.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgttcttcctccaccgcaacatggcgcgagccaaaacggcagtcaagattcacgaaatcgagcagagagcggcggcggatcaggaggcgagggtgggacggagctcgagaatgaactcgttggggaaaatagtgttccaaagcttagagcatagctcgagcagccaaactattggtgaggttggaatacggtgttttgatgacaatgttcatgatgcagatggtggtgttgatgttgagttgtgttgtgcagagctgctgggcgagagagtgaaggaagagattgacatgtctagaacctggaagaaaatagatgaagagattgaagccattgttatgcccgaggattaccggaataacaatgtttggatcctttgcaatgactgcaatgacacaactgaagtttacttccacattattggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000731 GO:0002039 GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019941 GO:0019985 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031347 GO:0031348 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032102 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045862 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0090304 GO:0140096 GO:1900424 GO:1900425 GO:1901360 GO:1901362 GO:1901483 GO:1901485 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko05162 map04115 map04120 map05162

Pfam Domains

Protein Families

zf-C3HC4 zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

141

Amino Acids

16.06

Weight (kDa)

4.89

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008886)

Species	Orthologous Gene IDs
malus_domestica	MD04G1089300.v1.1 MD12G1107700.v1.1
pyrus_communis	pycom04g08370
rosa_laevigata	RLG00000003447 RLG00000033932 RLG00000035274
rosa_multiflora	Rmu_co8224918.1_g000001 Rmu_sc0002460.1_g000039 Rmu_sc0005446.1_g000013 Rmu_sc0009617.1_g000009
rosa_samantha	Rh1BG137900 Rh1CG053500 Rh1CG053600 Rh1DG057700 Rh1DG057800 Rh3BG059100 Rh3CG058300 Rh3DG059600 Rh5BG241200 Rh5BG293200 Rh7AG232600 Rh7BG208700 Rh7BG208800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	71
AccII	CGCG	1 cut(s)	28
AciI	CCGC	4 cut(s)	16, 71, 74, 77
AclWI	GGATC	3 cut(s)	87, 364, 377
AcuI	CTGAAG	1 cut(s)	420
AfiI	CCNNNNNNNGG	1 cut(s)	22
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	1 cut(s)	326
AjnI	CCWGG	1 cut(s)	299
AluBI	AGCT	4 cut(s)	105, 144, 156, 256
AluI	AGCT	4 cut(s)	105, 144, 156, 256
Alw21I	GWGCWC	1 cut(s)	107
AlwI	GGATC	3 cut(s)	87, 364, 377
Ama87I	CYCGRG	3 cut(s)	106, 157, 341
ApeKI	GCWGC	2 cut(s)	162, 256
ArsI	GACNNNNNNTTYG	2 cut(s)	27, 59
AspLEI	GCGC	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	188
AvaI	CYCGRG	3 cut(s)	106, 157, 341
BamHI	GGATCC	1 cut(s)	369
BanII	GRGCYC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	107
BbvI	GCAGC	2 cut(s)	174, 243
BccI	CCATC	1 cut(s)	215
BceAI	ACGGC	1 cut(s)	54
BciT130I	CCWGG	1 cut(s)	301
BfaI	CTAG	1 cut(s)	294
BglI	GCCNNNNNGGC	1 cut(s)	38
BisI	GCNGC	4 cut(s)	72, 75, 163, 257
BlsI	GCNGC	4 cut(s)	73, 76, 164, 258
Bme1390I	CCNGG	1 cut(s)	301
BmeT110I	CYCGRG	3 cut(s)	106, 157, 341
BmiI	GGNNCC	1 cut(s)	371
BmrFI	CCNGG	1 cut(s)	301
BmsI	GCATC	1 cut(s)	205
BplI	GAGNNNNNCTC	2 cut(s)	140, 172
BsaJI	CCNNGG	1 cut(s)	342
BsaWI	WCCGGW	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse3DI	GCAATG	2 cut(s)	385, 394
BseBI	CCWGG	1 cut(s)	301
BseDI	CCNNGG	1 cut(s)	342
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMI	GCAATG	2 cut(s)	385, 394
BseXI	GCAGC	2 cut(s)	174, 243
BseYI	CCCAGC	1 cut(s)	259
BsgI	GTGCAG	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	107
BsiHKCI	CYCGRG	3 cut(s)	106, 157, 341
BsiSI	CCGG	1 cut(s)	352
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	111
BsoBI	CYCGRG	3 cut(s)	106, 157, 341
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	2 cut(s)	79, 369
BspACI	CCGC	4 cut(s)	16, 71, 74, 77
BspFNI	CGCG	1 cut(s)	28
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	371
BspPI	GGATC	3 cut(s)	87, 364, 377
BsrBI	CCGCTC	1 cut(s)	71
BsrDI	GCAATG	2 cut(s)	385, 394
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	2 cut(s)	79, 369
Bst2UI	CCWGG	1 cut(s)	301
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	2 cut(s)	273, 312
BstAPI	GCANNNNNTGC	1 cut(s)	384
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	145
BstFNI	CGCG	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	2 cut(s)	82, 372
BstMBI	GATC	2 cut(s)	79, 369
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 162, 384
BstNI	CCWGG	1 cut(s)	301
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	1 cut(s)	299
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	2 cut(s)	174, 243
BstX2I	RGATCY	1 cut(s)	369
BstXI	CCANNNNNNTGG	2 cut(s)	173, 419
BstYI	RGATCY	1 cut(s)	369
Cac8I	GCNNGC	1 cut(s)	30
CciI	TCATGA	1 cut(s)	211
CfoI	GCGC	1 cut(s)	28
CviAII	CATG	3 cut(s)	22, 212, 289
CviJI	RGCY	7 cut(s)	32, 105, 144, 156, 165, 256, 329
CviKI_1	RGCY	7 cut(s)	32, 105, 144, 156, 165, 256, 329
DdeI	CTNAG	1 cut(s)	145
DpnI	GATC	2 cut(s)	81, 371
DpnII	GATC	2 cut(s)	79, 369
Eam1104I	CTCTTC	2 cut(s)	273, 312
EarI	CTCTTC	2 cut(s)	273, 312
EciI	GGCGGA	1 cut(s)	92
Ecl136II	GAGCTC	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	107
Eco53kI	GAGCTC	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	420
Eco88I	CYCGRG	3 cut(s)	106, 157, 341
EcoICRI	GAGCTC	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	299
EcoT38I	GRGCYC	1 cut(s)	107
FaeI	CATG	3 cut(s)	25, 215, 292
FaiI	YATR	5 cut(s)	23, 153, 213, 290, 338
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	3 cut(s)	21, 211, 288
Fnu4HI	GCNGC	4 cut(s)	72, 75, 163, 257
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	4 cut(s)	72, 75, 163, 257
FspBI	CTAG	1 cut(s)	294
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	4 cut(s)	72, 75, 163, 257
GsaI	CCCAGC	1 cut(s)	263
HapII	CCGG	1 cut(s)	352
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	3 cut(s)	25, 215, 292
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HindIII	AAGCTT	1 cut(s)	142
HinfI	GANTC	1 cut(s)	49
HpaII	CCGG	1 cut(s)	352
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188III	TCNNGA	6 cut(s)	46, 53, 83, 108, 212, 294
Hpy8I	GTNNAC	1 cut(s)	406
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4V	TGCA	4 cut(s)	218, 251, 378, 387
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 162, 384
HpyF3I	CTNAG	1 cut(s)	145
Hsp92II	CATG	3 cut(s)	25, 215, 292
HspAI	GCGC	1 cut(s)	26
Kzo9I	GATC	2 cut(s)	79, 369
LmnI	GCTCC	1 cut(s)	102
LpnPI	CCDG	5 cut(s)	68, 245, 286, 313, 365
Lsp1109I	GCAGC	2 cut(s)	174, 243
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	294
MalI	GATC	2 cut(s)	81, 371
MbiI	CCGCTC	1 cut(s)	71
MboI	GATC	2 cut(s)	79, 369
MboII	GAAGA	3 cut(s)	290, 316, 329
MflI	RGATCY	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	5 cut(s)	20, 79, 84, 172, 337
MslI	CAYNNNNRTG	1 cut(s)	335
MspI	CCGG	1 cut(s)	352
MspR9I	CCNGG	1 cut(s)	301
MvaI	CCWGG	1 cut(s)	301
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	3 cut(s)	38, 162, 384
NdeII	GATC	2 cut(s)	79, 369
NlaIII	CATG	3 cut(s)	25, 215, 292
NlaIV	GGNNCC	1 cut(s)	371
NspI	RCATGY	1 cut(s)	292
PaeR7I	CTCGAG	2 cut(s)	106, 157
PagI	TCATGA	1 cut(s)	211
PciI	ACATGT	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	49
PkrI	GCNGC	4 cut(s)	73, 76, 164, 258
PscI	ACATGT	1 cut(s)	288
Psp124BI	GAGCTC	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	299
PspFI	CCCAGC	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	299
PspN4I	GGNNCC	1 cut(s)	371
PspXI	VCTCGAGB	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	369
RseI	CAYNNNNRTG	1 cut(s)	335
SacI	GAGCTC	1 cut(s)	107
SatI	GCNGC	4 cut(s)	72, 75, 163, 257
Sau3AI	GATC	2 cut(s)	79, 369
ScrFI	CCNGG	1 cut(s)	301
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	6 cut(s)	107, 146, 158, 183, 258, 302
SfaNI	GCATC	1 cut(s)	205
Sfr274I	CTCGAG	2 cut(s)	106, 157
SlaI	CTCGAG	2 cut(s)	106, 157
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	2 cut(s)	106, 157
SmoI	CTYRAG	2 cut(s)	106, 157
SsiI	CCGC	4 cut(s)	16, 71, 74, 77
SspMI	CTAG	1 cut(s)	294
SstI	GAGCTC	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	299
TaaI	ACNGT	1 cut(s)	192
TaqI	TCGA	3 cut(s)	60, 107, 158
TauI	GCSGC	2 cut(s)	74, 77
TfiI	GAWTC	1 cut(s)	49
TseI	GCWGC	2 cut(s)	162, 256
TspDTI	ATGAA	3 cut(s)	128, 200, 330
TspGWI	ACGGA	1 cut(s)	115
XbaI	TCTAGA	1 cut(s)	293
XceI	RCATGY	1 cut(s)	292
XhoI	CTCGAG	2 cut(s)	106, 157
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.