pycom04g08370

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0008886
Physical Location & Seq
Forward (+)
9981641 .. 9982783
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g08370.7

Sequence Viewer

Length: 495 bp
ATGTGGTATTTGCAGAATGTTTTCCACTGTAACAAGTGTGGATGTTGTTACTCAAGGGCGATGAAGGATTCAAACAATTGTGTGGAAAAAGCGATGCATCATAATTGCCCTGTGTGCTTTGAAGTAAAGTTTGGAGAATACTGTTGCACCAACTCACATCGGTTATTTCTGCAGTTTCTTTTGGATACAAGGGAAGACATTACTGTCTTGCGATGTGGACACAATATTCATTTGGAATGTATTCATGCCCAGGTTGCAAAATCATTCTGCGATATGTCCCGTGTATGGGAAAAACTTGATGAGGAGGTGGCAGGGACTCCCATGCCTCAGAAGTATCAAAATAAGATGGTTTGGATCCTCTGCAACTACTGTGGTGAAACATCTCAGGTTAATTTTCACATTGTGGCACACAAGTGCCTCAAGTGCAAATCCTACAATACAAGGAAAACACGAGAAGGGCCAGCGTCATTCTCGTCTAGGATTACTGCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

165

Amino Acids

19.12

Weight (kDa)

8.58

Isoelectric Point (pI)

53.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 203
AclWI GGATC 2 cut(s) 349, 362
AdeI CACNNNGTG 1 cut(s) 403
AfiI CCNNNNNNNGG 2 cut(s) 285, 286
AgsI TTSAA 2 cut(s) 72, 122
AjnI CCWGG 1 cut(s) 249
AjuI GAANNNNNNNTTGG 2 cut(s) 114, 146
AleI CACNNNNGTG 1 cut(s) 412
AlwI GGATC 2 cut(s) 349, 362
AoxI GGCC 1 cut(s) 458
Asp700I GAANNNNTTC 2 cut(s) 20, 240
AspS9I GGNCC 1 cut(s) 458
AsuHPI GGTGA 1 cut(s) 386
BamHI GGATCC 1 cut(s) 354
BauI CACGAG 1 cut(s) 450
BbsI GAAGAC 1 cut(s) 201
BccI CCATC 1 cut(s) 340
BciT130I CCWGG 1 cut(s) 251
BciVI GTATCC 1 cut(s) 178
BfaI CTAG 1 cut(s) 477
BfmI CTRYAG 1 cut(s) 170
BfuI GTATCC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 458
BmiI GGNNCC 1 cut(s) 356
BmrFI CCNGG 1 cut(s) 251
BmsI GCATC 2 cut(s) 84, 106
BpiI GAAGAC 1 cut(s) 201
BpuEI CTTGAG 2 cut(s) 37, 404
BsaJI CCNNGG 1 cut(s) 249
Bsc4I CCNNNNNNNGG 2 cut(s) 285, 286
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 47
BseLI CCNNNNNNNGG 2 cut(s) 285, 286
BseMII CTCAG 2 cut(s) 341, 398
BseRI GAGGAG 1 cut(s) 317
BshFI GGCC 1 cut(s) 460
BslFI GGGAC 2 cut(s) 262, 328
BslI CCNNNNNNNGG 2 cut(s) 285, 286
BsmFI GGGAC 2 cut(s) 262, 328
BsnI GGCC 1 cut(s) 460
Bsp143I GATC 1 cut(s) 354
BspANI GGCC 1 cut(s) 460
BspCNI CTCAG 2 cut(s) 340, 397
BspLI GGNNCC 1 cut(s) 356
BspMAI CTGCAG 1 cut(s) 174
BspPI GGATC 2 cut(s) 349, 362
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 1 cut(s) 354
BssSI CACGAG 1 cut(s) 450
Bst2BI CACGAG 1 cut(s) 450
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 4 cut(s) 29, 143, 205, 371
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 2 cut(s) 327, 384
BstF5I GGATG 1 cut(s) 47
BstKTI GATC 1 cut(s) 357
BstMBI GATC 1 cut(s) 354
BstMWI GCNNNNNNNGC 3 cut(s) 114, 254, 423
BstNI CCWGG 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 249
BstSFI CTRYAG 1 cut(s) 170
BstV2I GAAGAC 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 354
BstYI RGATCY 1 cut(s) 354
BsuI GTATCC 1 cut(s) 178
BsuRI GGCC 1 cut(s) 460
BtgZI GCGATG 3 cut(s) 74, 107, 226
BtsCI GGATG 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 462
Cfr13I GGNCC 1 cut(s) 458
CseI GACGC 1 cut(s) 453
CspCI CAANNNNNGTGG 2 cut(s) 352, 387
CviAII CATG 2 cut(s) 245, 322
CviJI RGCY 1 cut(s) 460
CviKI_1 RGCY 1 cut(s) 460
DdeI CTNAG 2 cut(s) 327, 384
DpnI GATC 1 cut(s) 356
DpnII GATC 1 cut(s) 354
DraIII CACNNNGTG 1 cut(s) 403
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 249
EcoT22I ATGCAT 1 cut(s) 99
FaeI CATG 2 cut(s) 248, 325
FaiI YATR 5 cut(s) 102, 246, 275, 286, 323
FaqI GGGAC 2 cut(s) 262, 328
FatI CATG 2 cut(s) 244, 321
FokI GGATG 1 cut(s) 54
FspBI CTAG 1 cut(s) 477
HaeIII GGCC 1 cut(s) 460
HgaI GACGC 1 cut(s) 453
Hin1II CATG 2 cut(s) 248, 325
HinfI GANTC 2 cut(s) 68, 316
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 1 cut(s) 218
Hpy188I TCNGA 1 cut(s) 330
Hpy8I GTNNAC 1 cut(s) 218
HpyAV CCTTC 2 cut(s) 58, 449
HpyCH4III ACNGT 4 cut(s) 29, 143, 205, 371
HpyCH4V TGCA 8 cut(s) 13, 97, 147, 172, 257, 363, 426, 488
HpyF10VI GCNNNNNNNGC 3 cut(s) 114, 254, 423
HpyF3I CTNAG 2 cut(s) 327, 384
Hsp92II CATG 2 cut(s) 248, 325
Kzo9I GATC 1 cut(s) 354
LpnPI CCDG 6 cut(s) 123, 236, 263, 297, 371, 474
LweI GCATC 2 cut(s) 84, 106
MaeI CTAG 1 cut(s) 477
MaeIII GTNAC 2 cut(s) 29, 47
MalI GATC 1 cut(s) 356
MboI GATC 1 cut(s) 354
MboII GAAGA 1 cut(s) 206
MfeI CAATTG 1 cut(s) 76
MflI RGATCY 1 cut(s) 354
MluCI AATT 3 cut(s) 76, 103, 391
MlyI GAGTC 1 cut(s) 310
MnlI CCTC 5 cut(s) 295, 298, 336, 368, 428
Mph1103I ATGCAT 1 cut(s) 99
MroXI GAANNNNTTC 2 cut(s) 20, 240
MseI TTAA 1 cut(s) 390
MslI CAYNNNNRTG 1 cut(s) 412
MspR9I CCNGG 1 cut(s) 251
MunI CAATTG 1 cut(s) 76
MvaI CCWGG 1 cut(s) 251
MwoI GCNNNNNNNGC 3 cut(s) 114, 254, 423
NdeII GATC 1 cut(s) 354
NlaIII CATG 2 cut(s) 248, 325
NlaIV GGNNCC 1 cut(s) 356
NsiI ATGCAT 1 cut(s) 99
OliI CACNNNNGTG 1 cut(s) 412
PdmI GAANNNNTTC 2 cut(s) 20, 240
PfeI GAWTC 1 cut(s) 68
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 249
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 356
PspPI GGNCC 1 cut(s) 458
PstI CTGCAG 1 cut(s) 174
PsuI RGATCY 1 cut(s) 354
RseI CAYNNNNRTG 1 cut(s) 412
SaqAI TTAA 1 cut(s) 390
Sau3AI GATC 1 cut(s) 354
Sau96I GGNCC 1 cut(s) 458
SchI GAGTC 1 cut(s) 310
ScrFI CCNGG 1 cut(s) 251
SetI ASST 4 cut(s) 255, 309, 390, 494
SfaNI GCATC 2 cut(s) 84, 106
SfcI CTRYAG 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 412
SmlI CTYRAG 2 cut(s) 52, 419
SmoI CTYRAG 2 cut(s) 52, 419
Sse9I AATT 3 cut(s) 76, 103, 391
SspI AATATT 1 cut(s) 226
SspMI CTAG 1 cut(s) 477
StyD4I CCNGG 1 cut(s) 249
TaaI ACNGT 4 cut(s) 29, 143, 205, 371
TasI AATT 3 cut(s) 76, 103, 391
TfiI GAWTC 1 cut(s) 68
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 1 cut(s) 32
TspDTI ATGAA 3 cut(s) 77, 218, 233
TspRI CASTG 1 cut(s) 32
XmnI GAANNNNTTC 2 cut(s) 20, 240
XspI CTAG 1 cut(s) 477
Zsp2I ATGCAT 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.