Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009617.1

Orthogroup ID

OG0008886

Physical Location & Seq

Genomic Coordinates Reverse (-)

24522 .. 25029

Gene Structure 508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009617.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atgttctccctccaccgcaacatggctcgagccaaaacggcagtcaagattcaggaaatcgagcagagagcggcggcagatcaggaggcgagggtgggacagagctcgagcagcccgagaatgaactcgttgaggaaaatagtgttccaaagcttagagcgtagctcgagcagccaaactattggtgaggttggaatgcggtgttttgatggcaatgttcatgatgcagatggtggtgttgatgttgacttgtgttgtgcagagctgctgggcgagagagtgaaggaagagattaacatgtctagaacctggaagaaaatagatgaagagattgaagccattgttatgcctgaggattatcggaataacaatgtttggatcctgtgtaatgattgcaatgacacaactgaagtttacttccacattattggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000731 GO:0002039 GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019941 GO:0019985 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031347 GO:0031348 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032102 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045862 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0090304 GO:0140096 GO:1900424 GO:1900425 GO:1901360 GO:1901362 GO:1901483 GO:1901485 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko05162 map04115 map04120 map05162

Pfam Domains

Protein Families

zf-C3HC4 zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

144

Amino Acids

16.3

Weight (kDa)

4.98

Isoelectric Point (pI)

57.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008886)

Species	Orthologous Gene IDs
malus_domestica	MD04G1089300.v1.1 MD12G1107700.v1.1
pyrus_communis	pycom04g08370
rosa_laevigata	RLG00000003447 RLG00000033932 RLG00000035274
rosa_multiflora	Rmu_co8224918.1_g000001 Rmu_sc0002460.1_g000039 Rmu_sc0005446.1_g000013 Rmu_sc0009617.1_g000009
rosa_samantha	Rh1BG137900 Rh1CG053500 Rh1CG053600 Rh1DG057700 Rh1DG057800 Rh3BG059100 Rh3CG058300 Rh3DG059600 Rh5BG241200 Rh5BG293200 Rh7AG232600 Rh7BG208700 Rh7BG208800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	71
AciI	CCGC	4 cut(s)	16, 71, 74, 199
AclWI	GGATC	2 cut(s)	373, 386
AcuI	CTGAAG	1 cut(s)	429
AfiI	CCNNNNNNNGG	1 cut(s)	22
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	1 cut(s)	335
AjnI	CCWGG	1 cut(s)	308
AluBI	AGCT	4 cut(s)	105, 153, 165, 265
AluI	AGCT	4 cut(s)	105, 153, 165, 265
Alw21I	GWGCWC	1 cut(s)	107
AlwI	GGATC	2 cut(s)	373, 386
Ama87I	CYCGRG	4 cut(s)	27, 106, 115, 166
ApeKI	GCWGC	3 cut(s)	111, 171, 265
ArsI	GACNNNNNNTTYG	2 cut(s)	27, 59
AsuHPI	GGTGA	1 cut(s)	197
AvaI	CYCGRG	4 cut(s)	27, 106, 115, 166
AxyI	CCTNAGG	1 cut(s)	351
BamHI	GGATCC	1 cut(s)	378
BanII	GRGCYC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	107
BbvI	GCAGC	3 cut(s)	123, 183, 252
BccI	CCATC	2 cut(s)	203, 224
BceAI	ACGGC	1 cut(s)	54
BciT130I	CCWGG	1 cut(s)	310
BfaI	CTAG	1 cut(s)	303
BglI	GCCNNNNNGGC	1 cut(s)	38
BisI	GCNGC	5 cut(s)	72, 75, 112, 172, 266
BlsI	GCNGC	5 cut(s)	73, 76, 113, 173, 267
Bme1390I	CCNGG	1 cut(s)	310
BmeT110I	CYCGRG	4 cut(s)	27, 106, 115, 166
BmiI	GGNNCC	1 cut(s)	380
BmrFI	CCNGG	1 cut(s)	310
BmsI	GCATC	1 cut(s)	214
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse21I	CCTNAGG	1 cut(s)	351
Bse3DI	GCAATG	2 cut(s)	220, 403
BseBI	CCWGG	1 cut(s)	310
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMI	GCAATG	2 cut(s)	220, 403
BseMII	CTCAG	1 cut(s)	342
BseXI	GCAGC	3 cut(s)	123, 183, 252
BseYI	CCCAGC	1 cut(s)	268
BsgI	GTGCAG	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	107
BsiHKCI	CYCGRG	4 cut(s)	27, 106, 115, 166
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	111
BsmI	GAATGC	1 cut(s)	201
BsoBI	CYCGRG	4 cut(s)	27, 106, 115, 166
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	2 cut(s)	79, 378
BspACI	CCGC	4 cut(s)	16, 71, 74, 199
BspCNI	CTCAG	1 cut(s)	343
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	380
BspPI	GGATC	2 cut(s)	373, 386
BsrBI	CCGCTC	1 cut(s)	71
BsrDI	GCAATG	2 cut(s)	220, 403
BssMI	GATC	2 cut(s)	79, 378
Bst2UI	CCWGG	1 cut(s)	310
Bst6I	CTCTTC	2 cut(s)	282, 321
BstDEI	CTNAG	2 cut(s)	154, 351
BstKTI	GATC	2 cut(s)	82, 381
BstMBI	GATC	2 cut(s)	79, 378
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 111, 171
BstNI	CCWGG	1 cut(s)	310
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	1 cut(s)	308
BstV1I	GCAGC	3 cut(s)	123, 183, 252
BstX2I	RGATCY	1 cut(s)	378
BstXI	CCANNNNNNTGG	2 cut(s)	182, 428
BstYI	RGATCY	1 cut(s)	378
Bsu36I	CCTNAGG	1 cut(s)	351
CciI	TCATGA	1 cut(s)	220
CviAII	CATG	3 cut(s)	22, 221, 298
CviJI	RGCY	9 cut(s)	26, 32, 105, 114, 153, 165, 174, 265, 338
CviKI_1	RGCY	9 cut(s)	26, 32, 105, 114, 153, 165, 174, 265, 338
DdeI	CTNAG	2 cut(s)	154, 351
DpnI	GATC	2 cut(s)	81, 380
DpnII	GATC	2 cut(s)	79, 378
Eam1104I	CTCTTC	2 cut(s)	282, 321
EarI	CTCTTC	2 cut(s)	282, 321
Ecl136II	GAGCTC	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	107
Eco53kI	GAGCTC	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	429
Eco81I	CCTNAGG	1 cut(s)	351
Eco88I	CYCGRG	4 cut(s)	27, 106, 115, 166
EcoICRI	GAGCTC	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	107
FaeI	CATG	3 cut(s)	25, 224, 301
FaiI	YATR	4 cut(s)	23, 222, 299, 347
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	3 cut(s)	21, 220, 297
Fnu4HI	GCNGC	5 cut(s)	72, 75, 112, 172, 266
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	5 cut(s)	72, 75, 112, 172, 266
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	5 cut(s)	72, 75, 112, 172, 266
GsaI	CCCAGC	1 cut(s)	272
Hin1II	CATG	3 cut(s)	25, 224, 301
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HindIII	AAGCTT	1 cut(s)	151
HinfI	GANTC	1 cut(s)	49
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	2 cut(s)	247, 415
Hpy188I	TCNGA	1 cut(s)	363
Hpy188III	TCNNGA	5 cut(s)	46, 53, 83, 221, 303
Hpy8I	GTNNAC	2 cut(s)	247, 415
HpyAV	CCTTC	1 cut(s)	277
HpyCH4V	TGCA	3 cut(s)	227, 260, 396
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 111, 171
HpyF3I	CTNAG	2 cut(s)	154, 351
Hsp92II	CATG	3 cut(s)	25, 224, 301
Kzo9I	GATC	2 cut(s)	79, 378
LpnPI	CCDG	7 cut(s)	38, 68, 254, 295, 322, 363, 395
Lsp1109I	GCAGC	3 cut(s)	123, 183, 252
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	303
MalI	GATC	2 cut(s)	81, 380
MbiI	CCGCTC	1 cut(s)	71
MboI	GATC	2 cut(s)	79, 378
MboII	GAAGA	3 cut(s)	299, 325, 338
MflI	RGATCY	1 cut(s)	378
MhlI	GDGCHC	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	6 cut(s)	20, 79, 84, 126, 181, 346
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	310
Mva1269I	GAATGC	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	310
MwoI	GCNNNNNNNGC	3 cut(s)	38, 111, 171
NdeII	GATC	2 cut(s)	79, 378
NlaIII	CATG	3 cut(s)	25, 224, 301
NlaIV	GGNNCC	1 cut(s)	380
NspI	RCATGY	1 cut(s)	301
PaeR7I	CTCGAG	3 cut(s)	27, 106, 166
PagI	TCATGA	1 cut(s)	220
PciI	ACATGT	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	1 cut(s)	113
PctI	GAATGC	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	49
PkrI	GCNGC	5 cut(s)	73, 76, 113, 173, 267
PscI	ACATGT	1 cut(s)	297
Psp124BI	GAGCTC	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	308
PspFI	CCCAGC	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	308
PspN4I	GGNNCC	1 cut(s)	380
PspXI	VCTCGAGB	3 cut(s)	27, 106, 166
PsuI	RGATCY	1 cut(s)	378
RseI	CAYNNNNRTG	1 cut(s)	344
SacI	GAGCTC	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	5 cut(s)	72, 75, 112, 172, 266
Sau3AI	GATC	2 cut(s)	79, 378
ScrFI	CCNGG	1 cut(s)	310
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	6 cut(s)	107, 155, 167, 192, 267, 311
SfaNI	GCATC	1 cut(s)	214
Sfr274I	CTCGAG	3 cut(s)	27, 106, 166
SlaI	CTCGAG	3 cut(s)	27, 106, 166
SmiMI	CAYNNNNRTG	1 cut(s)	344
SmlI	CTYRAG	3 cut(s)	27, 106, 166
SmoI	CTYRAG	3 cut(s)	27, 106, 166
SsiI	CCGC	4 cut(s)	16, 71, 74, 199
SspMI	CTAG	1 cut(s)	303
SstI	GAGCTC	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	308
TaqI	TCGA	4 cut(s)	28, 60, 107, 167
TauI	GCSGC	2 cut(s)	74, 77
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TseI	GCWGC	3 cut(s)	111, 171, 265
TspDTI	ATGAA	3 cut(s)	137, 209, 339
XbaI	TCTAGA	1 cut(s)	302
XceI	RCATGY	1 cut(s)	301
XhoI	CTCGAG	3 cut(s)	27, 106, 166
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.