Rh1BG137900

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0008886
Physical Location & Seq
Forward (+)
22999753 .. 23000403
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG137900.1

Sequence Viewer

Length: 651 bp
ATGGCCAATGCTGAAAAAATTGCAGAGATTAAGGCTAAAGAGTTTGATGAGAAGATGAAGAACAAGTATGGACAGAGGGTGAAGCCTGAGTCTCTGAGATGTTTGTATGGGTCACTGTGGTTGTGGCCATTGGGTTATGTATGTGAAGTAAAGGAAGGGGGTGGCTGTCTCTGTCTCTTTCTAATTGAGGGGATTCAGACAAACAAAGAAGCCAAACTCCCATCCTTCCCAAATCGGGAAACTTCTTCTTTGCTTTGTCTGCGATTCCCTTCCCTTCCTCCAACTCTCATGGAAGGCTCAGGCAATGAACATCCCAGTTTTGGGAAGATGGGTTACGGATGCAAGCATTACAGAAGGAGATGTGGGCACACAATGCATTGTGAATGTTACAGCGAAATGATAAAGCGGGACAAATATTGTTGTCCAATATGCTCCAAGTCAGTGATTGACATGTCTAGAACCTGGAAGAAAATAGATGAAGAGATTGAAGCCACTGTTATGCCCGAGGATTACCGGAATAACAAGGTTTGGATCCTGTGCAATGACTGCAATGACACAACCGAAGTTTACTTCCACATTATTGGCCAGAAATGCAACCACTGCAAATCATACAACACCCGCACAATTGCCCCTCCAGTTCTTCCTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000731 GO:0002039 GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019941 GO:0019985 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031347 GO:0031348 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032102 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045862 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0090304 GO:0140096 GO:1900424 GO:1900425 GO:1901360 GO:1901362 GO:1901483 GO:1901485 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-C3HC4 zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

216

Amino Acids

24.88

Weight (kDa)

8.41

Isoelectric Point (pI)

62.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zinc_ribbon_6 PF14599 149 - 207 1.5e-27 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 406, 619
AclWI GGATC 2 cut(s) 526, 539
AcoI YGGCCR 3 cut(s) 3, 125, 583
AfiI CCNNNNNNNGG 3 cut(s) 235, 320, 321
AflIII ACRYGT 1 cut(s) 450
AgsI TTSAA 1 cut(s) 488
AjnI CCWGG 1 cut(s) 461
Alw26I GTCTC 3 cut(s) 96, 173, 179
AlwI GGATC 2 cut(s) 526, 539
Ama87I CYCGRG 1 cut(s) 503
AoxI GGCC 3 cut(s) 3, 125, 583
AsuHPI GGTGA 1 cut(s) 91
AvaI CYCGRG 1 cut(s) 503
BaeGI GKGCMC 1 cut(s) 369
BalI TGGCCA 3 cut(s) 5, 127, 585
BamHI GGATCC 1 cut(s) 531
BarI GAAGNNNNNNTAC 2 cut(s) 317, 349
BccI CCATC 2 cut(s) 229, 322
BciT130I CCWGG 1 cut(s) 463
BcoDI GTCTC 3 cut(s) 96, 173, 179
BfaI CTAG 1 cut(s) 456
Bme1390I CCNGG 1 cut(s) 463
BmeT110I CYCGRG 1 cut(s) 503
BmiI GGNNCC 1 cut(s) 533
BmrFI CCNGG 1 cut(s) 463
BmrI ACTGGG 1 cut(s) 309
BmsI GCATC 1 cut(s) 329
BmuI ACTGGG 1 cut(s) 309
BpmI CTGGAG 1 cut(s) 618
Bpu10I CCTNAGC 1 cut(s) 298
BsaJI CCNNGG 1 cut(s) 504
BsaWI WCCGGW 1 cut(s) 513
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 320, 321
Bse1I ACTGG 2 cut(s) 315, 635
Bse3DI GCAATG 3 cut(s) 310, 547, 556
BseBI CCWGG 1 cut(s) 463
BseDI CCNNGG 1 cut(s) 504
BseGI GGATG 3 cut(s) 221, 310, 344
BseLI CCNNNNNNNGG 3 cut(s) 235, 320, 321
BseMI GCAATG 3 cut(s) 310, 547, 556
BseMII CTCAG 3 cut(s) 78, 86, 312
BseNI ACTGG 2 cut(s) 315, 635
BseSI GKGCMC 1 cut(s) 369
BshFI GGCC 3 cut(s) 5, 127, 585
BsiHKCI CYCGRG 1 cut(s) 503
BsiSI CCGG 1 cut(s) 514
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 3 cut(s) 235, 320, 321
BsmAI GTCTC 3 cut(s) 96, 173, 179
BsmFI GGGAC 1 cut(s) 422
BsnI GGCC 3 cut(s) 5, 127, 585
BsoBI CYCGRG 1 cut(s) 503
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 1 cut(s) 531
BspACI CCGC 2 cut(s) 406, 619
BspANI GGCC 3 cut(s) 5, 127, 585
BspCNI CTCAG 3 cut(s) 79, 87, 311
BspLI GGNNCC 1 cut(s) 533
BspPI GGATC 2 cut(s) 526, 539
BsrDI GCAATG 3 cut(s) 310, 547, 556
BsrI ACTGG 2 cut(s) 315, 635
BssECI CCNNGG 1 cut(s) 504
BssMI GATC 1 cut(s) 531
Bst2UI CCWGG 1 cut(s) 463
Bst4CI ACNGT 2 cut(s) 117, 496
Bst6I CTCTTC 1 cut(s) 474
BstAPI GCANNNNNTGC 3 cut(s) 373, 546, 600
BstC8I GCNNGC 1 cut(s) 344
BstDEI CTNAG 3 cut(s) 87, 95, 298
BstF5I GGATG 3 cut(s) 221, 310, 344
BstKTI GATC 1 cut(s) 534
BstMAI GTCTC 3 cut(s) 96, 173, 179
BstMBI GATC 1 cut(s) 531
BstMWI GCNNNNNNNGC 5 cut(s) 259, 373, 546, 591, 600
BstNI CCWGG 1 cut(s) 463
BstNSI RCATGY 1 cut(s) 454
BstSCI CCNGG 1 cut(s) 461
BstSLI GKGCMC 1 cut(s) 369
BstX2I RGATCY 1 cut(s) 531
BstXI CCANNNNNNTGG 1 cut(s) 581
BstYI RGATCY 1 cut(s) 531
BsuRI GGCC 3 cut(s) 5, 127, 585
BtsCI GGATG 3 cut(s) 221, 310, 344
BtsI GCAGTG 1 cut(s) 598
BtsIMutI CAGTG 4 cut(s) 113, 447, 492, 598
Cac8I GCNNGC 1 cut(s) 344
CviAII CATG 2 cut(s) 289, 451
CviJI RGCY 9 cut(s) 5, 35, 85, 127, 165, 212, 297, 491, 585
CviKI_1 RGCY 9 cut(s) 5, 35, 85, 127, 165, 212, 297, 491, 585
DdeI CTNAG 3 cut(s) 87, 95, 298
DpnI GATC 1 cut(s) 533
DpnII GATC 1 cut(s) 531
EaeI YGGCCR 3 cut(s) 3, 125, 583
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Eco88I CYCGRG 1 cut(s) 503
EcoRII CCWGG 1 cut(s) 461
EcoT22I ATGCAT 1 cut(s) 378
FaeI CATG 2 cut(s) 292, 454
FaiI YATR 9 cut(s) 69, 108, 138, 142, 290, 430, 452, 500, 610
FaqI GGGAC 1 cut(s) 422
FatI CATG 2 cut(s) 288, 450
FauI CCCGC 2 cut(s) 399, 626
FokI GGATG 3 cut(s) 208, 297, 351
FspBI CTAG 1 cut(s) 456
GsuI CTGGAG 1 cut(s) 618
HaeIII GGCC 3 cut(s) 5, 127, 585
HapII CCGG 1 cut(s) 514
Hin1II CATG 2 cut(s) 292, 454
HinfI GANTC 3 cut(s) 89, 193, 264
HpaII CCGG 1 cut(s) 514
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 568
Hpy188I TCNGA 2 cut(s) 96, 198
Hpy188III TCNNGA 2 cut(s) 236, 456
Hpy8I GTNNAC 1 cut(s) 568
HpyAV CCTTC 6 cut(s) 149, 235, 279, 284, 287, 348
HpyCH4III ACNGT 2 cut(s) 117, 496
HpyCH4V TGCA 7 cut(s) 23, 342, 376, 540, 549, 594, 603
HpyF10VI GCNNNNNNNGC 5 cut(s) 259, 373, 546, 591, 600
HpyF3I CTNAG 3 cut(s) 87, 95, 298
Hsp92II CATG 2 cut(s) 292, 454
Kzo9I GATC 1 cut(s) 531
LmnI GCTCC 1 cut(s) 437
LpnPI CCDG 8 cut(s) 99, 285, 328, 448, 475, 527, 548, 599
LweI GCATC 1 cut(s) 329
MaeI CTAG 1 cut(s) 456
MaeIII GTNAC 3 cut(s) 111, 332, 386
MalI GATC 1 cut(s) 533
MboI GATC 1 cut(s) 531
MboII GAAGA 7 cut(s) 64, 70, 237, 337, 478, 491, 632
MfeI CAATTG 1 cut(s) 624
MflI RGATCY 1 cut(s) 531
MhlI GDGCHC 1 cut(s) 369
MlsI TGGCCA 3 cut(s) 5, 127, 585
MluCI AATT 3 cut(s) 18, 183, 624
MluNI TGGCCA 3 cut(s) 5, 127, 585
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 1 cut(s) 305
MnlI CCTC 5 cut(s) 69, 181, 288, 499, 642
Mox20I TGGCCA 3 cut(s) 5, 127, 585
Mph1103I ATGCAT 1 cut(s) 378
MscI TGGCCA 3 cut(s) 5, 127, 585
MseI TTAA 1 cut(s) 30
MslI CAYNNNNRTG 1 cut(s) 497
Msp20I TGGCCA 3 cut(s) 5, 127, 585
MspI CCGG 1 cut(s) 514
MspR9I CCNGG 1 cut(s) 463
MunI CAATTG 1 cut(s) 624
MvaI CCWGG 1 cut(s) 463
MwoI GCNNNNNNNGC 5 cut(s) 259, 373, 546, 591, 600
NdeII GATC 1 cut(s) 531
NlaIII CATG 2 cut(s) 292, 454
NlaIV GGNNCC 1 cut(s) 533
NmuCI GTSAC 1 cut(s) 111
NsiI ATGCAT 1 cut(s) 378
NspI RCATGY 1 cut(s) 454
PciI ACATGT 1 cut(s) 450
PfeI GAWTC 2 cut(s) 193, 264
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PscI ACATGT 1 cut(s) 450
Psp6I CCWGG 1 cut(s) 461
PspGI CCWGG 1 cut(s) 461
PspN4I GGNNCC 1 cut(s) 533
PsuI RGATCY 1 cut(s) 531
RseI CAYNNNNRTG 1 cut(s) 497
SaqAI TTAA 1 cut(s) 30
Sau3AI GATC 1 cut(s) 531
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 463
SduI GDGCHC 1 cut(s) 369
SetI ASST 2 cut(s) 464, 528
SfaNI GCATC 1 cut(s) 329
SmiMI CAYNNNNRTG 1 cut(s) 497
Sse9I AATT 3 cut(s) 18, 183, 624
SsiI CCGC 2 cut(s) 406, 619
SspI AATATT 1 cut(s) 416
SspMI CTAG 1 cut(s) 456
StyD4I CCNGG 1 cut(s) 461
TaaI ACNGT 2 cut(s) 117, 496
TasI AATT 3 cut(s) 18, 183, 624
TfiI GAWTC 2 cut(s) 193, 264
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TscAI CASTG 4 cut(s) 120, 447, 499, 605
TseFI GTSAC 1 cut(s) 111
Tsp45I GTSAC 1 cut(s) 111
TspDTI ATGAA 3 cut(s) 71, 321, 492
TspGWI ACGGA 1 cut(s) 351
TspRI CASTG 4 cut(s) 120, 447, 499, 605
XbaI TCTAGA 1 cut(s) 455
XceI RCATGY 1 cut(s) 454
XspI CTAG 1 cut(s) 456
Zsp2I ATGCAT 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.