Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002460.1

Orthogroup ID

OG0008886

Physical Location & Seq

Genomic Coordinates Forward (+)

152425 .. 152911

Gene Structure 487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002460.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atggcgcgagccaaaacggcagtcaagattcaggaaatcgagcagagagcgacgactgatcaggaggcgagggtgggacggagcacgagcagcccgagaatgaactcgtcggggaaaatagtgttcctaagtttagagcgtagctcgagcagccaaactattggtgaggttggaatgcggtgttttgatggcaatgttcatgatgcagatggtggtgttgatgttgacttgtgttgtgcagagctgctgggcgagagagtgaaggaagagattaacatgtctagaacctggaagaaaatagatgaagagattgaagccattgttatgcctgaggattatcggaataacaatgtttggatcctgtgtaatgattgcaatgacacaactgaagtttacttccacattattggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000731 GO:0002039 GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019941 GO:0019985 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031347 GO:0031348 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032102 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045862 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0090304 GO:0140096 GO:1900424 GO:1900425 GO:1901360 GO:1901362 GO:1901483 GO:1901485 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko05162 map04115 map04120 map05162

Pfam Domains

Protein Families

zf-C3HC4 zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

137

Amino Acids

15.38

Weight (kDa)

4.78

Isoelectric Point (pI)

52.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008886)

Species	Orthologous Gene IDs
malus_domestica	MD04G1089300.v1.1 MD12G1107700.v1.1
pyrus_communis	pycom04g08370
rosa_laevigata	RLG00000003447 RLG00000033932 RLG00000035274
rosa_multiflora	Rmu_co8224918.1_g000001 Rmu_sc0002460.1_g000039 Rmu_sc0005446.1_g000013 Rmu_sc0009617.1_g000009
rosa_samantha	Rh1BG137900 Rh1CG053500 Rh1CG053600 Rh1DG057700 Rh1DG057800 Rh3BG059100 Rh3CG058300 Rh3DG059600 Rh5BG241200 Rh5BG293200 Rh7AG232600 Rh7BG208700 Rh7BG208800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	7
AciI	CCGC	1 cut(s)	178
AclWI	GGATC	2 cut(s)	352, 365
AcuI	CTGAAG	1 cut(s)	408
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	1 cut(s)	314
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	2 cut(s)	144, 244
AluI	AGCT	2 cut(s)	144, 244
Alw21I	GWGCWC	1 cut(s)	86
AlwI	GGATC	2 cut(s)	352, 365
Ama87I	CYCGRG	2 cut(s)	94, 145
ApeKI	GCWGC	3 cut(s)	90, 150, 244
ArsI	GACNNNNNNTTYG	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	176
AvaI	CYCGRG	2 cut(s)	94, 145
AxyI	CCTNAGG	1 cut(s)	330
BamHI	GGATCC	1 cut(s)	357
BauI	CACGAG	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	86
BbvI	GCAGC	3 cut(s)	102, 162, 231
BccI	CCATC	2 cut(s)	182, 203
BceAI	ACGGC	1 cut(s)	33
BciT130I	CCWGG	1 cut(s)	289
BclI	TGATCA	1 cut(s)	58
BfaI	CTAG	1 cut(s)	282
BglI	GCCNNNNNGGC	1 cut(s)	17
BisI	GCNGC	3 cut(s)	91, 151, 245
BlsI	GCNGC	3 cut(s)	92, 152, 246
Bme1390I	CCNGG	1 cut(s)	289
BmeT110I	CYCGRG	2 cut(s)	94, 145
BmiI	GGNNCC	1 cut(s)	359
BmrFI	CCNGG	1 cut(s)	289
BmsI	GCATC	1 cut(s)	193
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
Bse21I	CCTNAGG	1 cut(s)	330
Bse3DI	GCAATG	2 cut(s)	199, 382
BseBI	CCWGG	1 cut(s)	289
BseMI	GCAATG	2 cut(s)	199, 382
BseMII	CTCAG	1 cut(s)	321
BseXI	GCAGC	3 cut(s)	102, 162, 231
BseYI	CCCAGC	1 cut(s)	247
BsgI	GTGCAG	1 cut(s)	258
Bsh1236I	CGCG	1 cut(s)	7
BsiHKAI	GWGCWC	1 cut(s)	86
BsiHKCI	CYCGRG	2 cut(s)	94, 145
BslFI	GGGAC	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	90
BsmI	GAATGC	1 cut(s)	180
BsoBI	CYCGRG	2 cut(s)	94, 145
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	2 cut(s)	58, 357
BspACI	CCGC	1 cut(s)	178
BspCNI	CTCAG	1 cut(s)	322
BspFNI	CGCG	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	359
BspPI	GGATC	2 cut(s)	352, 365
BsrDI	GCAATG	2 cut(s)	199, 382
BssMI	GATC	2 cut(s)	58, 357
BssSI	CACGAG	1 cut(s)	85
Bst2BI	CACGAG	1 cut(s)	85
Bst2UI	CCWGG	1 cut(s)	289
Bst6I	CTCTTC	2 cut(s)	261, 300
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	2 cut(s)	128, 330
BstFNI	CGCG	1 cut(s)	7
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	61, 360
BstMBI	GATC	2 cut(s)	58, 357
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 90, 150
BstNI	CCWGG	1 cut(s)	289
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	287
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	3 cut(s)	102, 162, 231
BstX2I	RGATCY	1 cut(s)	357
BstXI	CCANNNNNNTGG	2 cut(s)	161, 407
BstYI	RGATCY	1 cut(s)	357
Bsu36I	CCTNAGG	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	9
CciI	TCATGA	1 cut(s)	199
CfoI	GCGC	1 cut(s)	7
CviAII	CATG	2 cut(s)	200, 277
CviJI	RGCY	6 cut(s)	11, 93, 144, 153, 244, 317
CviKI_1	RGCY	6 cut(s)	11, 93, 144, 153, 244, 317
DdeI	CTNAG	2 cut(s)	128, 330
DpnI	GATC	2 cut(s)	60, 359
DpnII	GATC	2 cut(s)	58, 357
Eam1104I	CTCTTC	2 cut(s)	261, 300
EarI	CTCTTC	2 cut(s)	261, 300
Eco57I	CTGAAG	1 cut(s)	408
Eco81I	CCTNAGG	1 cut(s)	330
Eco88I	CYCGRG	2 cut(s)	94, 145
EcoRII	CCWGG	1 cut(s)	287
FaeI	CATG	2 cut(s)	203, 280
FaiI	YATR	3 cut(s)	201, 278, 326
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	2 cut(s)	199, 276
FbaI	TGATCA	1 cut(s)	58
Fnu4HI	GCNGC	3 cut(s)	91, 151, 245
Fsp4HI	GCNGC	3 cut(s)	91, 151, 245
FspBI	CTAG	1 cut(s)	282
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	91, 151, 245
GsaI	CCCAGC	1 cut(s)	251
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	2 cut(s)	203, 280
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	1 cut(s)	28
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	2 cut(s)	226, 394
Hpy188I	TCNGA	1 cut(s)	342
Hpy188III	TCNNGA	5 cut(s)	25, 32, 62, 200, 282
Hpy8I	GTNNAC	2 cut(s)	226, 394
Hpy99I	CGWCG	2 cut(s)	55, 112
HpyAV	CCTTC	1 cut(s)	256
HpyCH4V	TGCA	3 cut(s)	206, 239, 375
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 90, 150
HpyF3I	CTNAG	2 cut(s)	128, 330
Hsp92II	CATG	2 cut(s)	203, 280
HspAI	GCGC	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	58, 357
LmnI	GCTCC	1 cut(s)	81
LpnPI	CCDG	7 cut(s)	17, 47, 233, 274, 301, 342, 374
Lsp1109I	GCAGC	3 cut(s)	102, 162, 231
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	282
MalI	GATC	2 cut(s)	60, 359
MboI	GATC	2 cut(s)	58, 357
MboII	GAAGA	3 cut(s)	278, 304, 317
MflI	RGATCY	1 cut(s)	357
MhlI	GDGCHC	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	4 cut(s)	58, 63, 160, 325
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	323
MspR9I	CCNGG	1 cut(s)	289
Mva1269I	GAATGC	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	289
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	3 cut(s)	17, 90, 150
NdeII	GATC	2 cut(s)	58, 357
NlaIII	CATG	2 cut(s)	203, 280
NlaIV	GGNNCC	1 cut(s)	359
NspI	RCATGY	1 cut(s)	280
PaeR7I	CTCGAG	1 cut(s)	145
PagI	TCATGA	1 cut(s)	199
PciI	ACATGT	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	1 cut(s)	92
PctI	GAATGC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	3 cut(s)	92, 152, 246
PscI	ACATGT	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	287
PspFI	CCCAGC	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	359
PspXI	VCTCGAGB	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	357
RseI	CAYNNNNRTG	1 cut(s)	323
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	3 cut(s)	91, 151, 245
Sau3AI	GATC	2 cut(s)	58, 357
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	86
SetI	ASST	4 cut(s)	146, 171, 246, 290
SfaNI	GCATC	1 cut(s)	193
Sfr274I	CTCGAG	1 cut(s)	145
SlaI	CTCGAG	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
SsiI	CCGC	1 cut(s)	178
SspMI	CTAG	1 cut(s)	282
StyD4I	CCNGG	1 cut(s)	287
TaqI	TCGA	2 cut(s)	39, 146
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TseI	GCWGC	3 cut(s)	90, 150, 244
TspDTI	ATGAA	3 cut(s)	116, 188, 318
TspGWI	ACGGA	1 cut(s)	94
XbaI	TCTAGA	1 cut(s)	281
XceI	RCATGY	1 cut(s)	280
XhoI	CTCGAG	1 cut(s)	145
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.