RLG00000003447

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008886
Physical Location & Seq
Forward (+)
48614719 .. 48615289
571 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003447

Sequence Viewer

Length: 459 bp
ATGTTCTCTCTCCACCGCAAGACGGCACGGGCCAAAACGGTAGTCAAGATTCAGGAACTCGAGCAGAGAGCGACGGCGGATCAGGCGGCGAAGGTGGGACGGAGCTCGAGCAGCCCGAGAATGAACTCGTCGGGGAAAATAGTGTTCCAAAGCTTAGAGCGTAGCTCGAGCAGTCCAAGCAGCTTCAATGATGGTGGTGTTGATGTTGAGTTGTGTTGTGCAGAGCTGCTGGGCCAGAGAGTGAAGGAAGAGATTGACATGTCTAGAACCTGGAAGAAAATAGATGAAGAGATTGAAGCCATTGTTATGCCCGAGGATTACCGGAATAACAATGTTTGGATCCTATGCAATGACTGCAATGACACAACTGAAGTTTACTTCCACATTATTGGCCAGAAATGCAGCCACTGCAAATTATACAACGCCTGCACAATTGCCCCTCCAGTTCTTCCTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000731 GO:0002039 GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019941 GO:0019985 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031347 GO:0031348 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032102 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045862 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0090304 GO:0140096 GO:1900424 GO:1900425 GO:1901360 GO:1901362 GO:1901483 GO:1901485 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-C3HC4 zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

153

Amino Acids

17.07

Weight (kDa)

6.3

Isoelectric Point (pI)

64.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zinc_ribbon_6 PF14599 85 - 142 1.2e-23 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 16, 77, 86
AclWI GGATC 3 cut(s) 87, 334, 347
AcoI YGGCCR 1 cut(s) 391
AcuI CTGAAG 1 cut(s) 390
AfiI CCNNNNNNNGG 1 cut(s) 22
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 2 cut(s) 187, 296
AjnI CCWGG 1 cut(s) 269
AluBI AGCT 5 cut(s) 105, 153, 165, 183, 226
AluI AGCT 5 cut(s) 105, 153, 165, 183, 226
Alw21I GWGCWC 1 cut(s) 107
AlwI GGATC 3 cut(s) 87, 334, 347
AlwNI CAGNNNCTG 1 cut(s) 408
Ama87I CYCGRG 5 cut(s) 59, 106, 115, 166, 311
AoxI GGCC 3 cut(s) 30, 232, 391
ApeKI GCWGC 4 cut(s) 111, 180, 226, 402
ArsI GACNNNNNNTTYG 2 cut(s) 27, 59
AspS9I GGNCC 2 cut(s) 30, 232
AvaI CYCGRG 5 cut(s) 59, 106, 115, 166, 311
BalI TGGCCA 1 cut(s) 393
BamHI GGATCC 1 cut(s) 339
BanII GRGCYC 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 107
BbvI GCAGC 4 cut(s) 123, 192, 213, 414
BccI CCATC 1 cut(s) 185
BceAI ACGGC 2 cut(s) 39, 90
BciT130I CCWGG 1 cut(s) 271
BfaI CTAG 1 cut(s) 264
BisI GCNGC 5 cut(s) 87, 112, 181, 227, 403
BlsI GCNGC 5 cut(s) 88, 113, 182, 228, 404
Bme1390I CCNGG 1 cut(s) 271
BmeT110I CYCGRG 5 cut(s) 59, 106, 115, 166, 311
BmgT120I GGNCC 2 cut(s) 30, 232
BmiI GGNNCC 1 cut(s) 341
BmrFI CCNGG 1 cut(s) 271
BplI GAGNNNNNCTC 2 cut(s) 149, 181
BpmI CTGGAG 1 cut(s) 426
BsaJI CCNNGG 1 cut(s) 312
BsaWI WCCGGW 1 cut(s) 321
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 443
Bse3DI GCAATG 2 cut(s) 355, 364
BseBI CCWGG 1 cut(s) 271
BseDI CCNNGG 1 cut(s) 312
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMI GCAATG 2 cut(s) 355, 364
BseNI ACTGG 1 cut(s) 443
BseXI GCAGC 4 cut(s) 123, 192, 213, 414
BseYI CCCAGC 1 cut(s) 229
BsgI GTGCAG 2 cut(s) 240, 412
BshFI GGCC 3 cut(s) 32, 234, 393
BsiHKAI GWGCWC 1 cut(s) 107
BsiHKCI CYCGRG 5 cut(s) 59, 106, 115, 166, 311
BsiSI CCGG 1 cut(s) 322
BslFI GGGAC 1 cut(s) 111
BslI CCNNNNNNNGG 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 111
BsnI GGCC 3 cut(s) 32, 234, 393
BsoBI CYCGRG 5 cut(s) 59, 106, 115, 166, 311
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 2 cut(s) 79, 339
BspACI CCGC 3 cut(s) 16, 77, 86
BspANI GGCC 3 cut(s) 32, 234, 393
BspLI GGNNCC 1 cut(s) 341
BspPI GGATC 3 cut(s) 87, 334, 347
BsrDI GCAATG 2 cut(s) 355, 364
BsrI ACTGG 1 cut(s) 443
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 2 cut(s) 79, 339
Bst2UI CCWGG 1 cut(s) 271
Bst4CI ACNGT 1 cut(s) 40
Bst6I CTCTTC 2 cut(s) 243, 282
BstAPI GCANNNNNTGC 2 cut(s) 354, 408
BstC8I GCNNGC 1 cut(s) 427
BstDEI CTNAG 1 cut(s) 154
BstKTI GATC 2 cut(s) 82, 342
BstMBI GATC 2 cut(s) 79, 339
BstMWI GCNNNNNNNGC 6 cut(s) 83, 111, 177, 354, 399, 408
BstNI CCWGG 1 cut(s) 271
BstNSI RCATGY 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 269
BstV1I GCAGC 4 cut(s) 123, 192, 213, 414
BstX2I RGATCY 1 cut(s) 339
BstXI CCANNNNNNTGG 1 cut(s) 389
BstYI RGATCY 1 cut(s) 339
BsuRI GGCC 3 cut(s) 32, 234, 393
BtsI GCAGTG 1 cut(s) 406
BtsIMutI CAGTG 1 cut(s) 406
Cac8I GCNNGC 1 cut(s) 427
CaiI CAGNNNCTG 1 cut(s) 408
Cfr13I GGNCC 2 cut(s) 30, 232
CspCI CAANNNNNGTGG 2 cut(s) 175, 210
CviAII CATG 1 cut(s) 259
DdeI CTNAG 1 cut(s) 154
DpnI GATC 2 cut(s) 81, 341
DpnII GATC 2 cut(s) 79, 339
EaeI YGGCCR 1 cut(s) 391
Eam1104I CTCTTC 2 cut(s) 243, 282
EarI CTCTTC 2 cut(s) 243, 282
EciI GGCGGA 1 cut(s) 92
Ecl136II GAGCTC 1 cut(s) 105
Eco24I GRGCYC 1 cut(s) 107
Eco53kI GAGCTC 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 390
Eco88I CYCGRG 5 cut(s) 59, 106, 115, 166, 311
EcoICRI GAGCTC 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 269
EcoT38I GRGCYC 1 cut(s) 107
FaeI CATG 1 cut(s) 262
FaiI YATR 4 cut(s) 260, 308, 346, 418
FaqI GGGAC 1 cut(s) 111
FatI CATG 1 cut(s) 258
Fnu4HI GCNGC 5 cut(s) 87, 112, 181, 227, 403
FriOI GRGCYC 1 cut(s) 107
Fsp4HI GCNGC 5 cut(s) 87, 112, 181, 227, 403
FspBI CTAG 1 cut(s) 264
GluI GCNGC 5 cut(s) 87, 112, 181, 227, 403
GsaI CCCAGC 1 cut(s) 233
GsuI CTGGAG 1 cut(s) 426
HaeIII GGCC 3 cut(s) 32, 234, 393
HapII CCGG 1 cut(s) 322
Hin1II CATG 1 cut(s) 262
HindIII AAGCTT 1 cut(s) 151
HinfI GANTC 1 cut(s) 49
HpaII CCGG 1 cut(s) 322
Hpy166II GTNNAC 1 cut(s) 376
Hpy188III TCNNGA 3 cut(s) 46, 53, 264
Hpy8I GTNNAC 1 cut(s) 376
Hpy99I CGWCG 2 cut(s) 76, 133
HpyAV CCTTC 2 cut(s) 85, 238
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4V TGCA 6 cut(s) 221, 348, 357, 402, 411, 429
HpyF10VI GCNNNNNNNGC 6 cut(s) 83, 111, 177, 354, 399, 408
HpyF3I CTNAG 1 cut(s) 154
Hsp92II CATG 1 cut(s) 262
Kzo9I GATC 2 cut(s) 79, 339
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 9 cut(s) 38, 68, 215, 248, 256, 283, 335, 407, 439
Lsp1109I GCAGC 4 cut(s) 123, 192, 213, 414
MaeI CTAG 1 cut(s) 264
MalI GATC 2 cut(s) 81, 341
MboI GATC 2 cut(s) 79, 339
MboII GAAGA 4 cut(s) 260, 286, 299, 440
MfeI CAATTG 1 cut(s) 432
MflI RGATCY 1 cut(s) 339
MhlI GDGCHC 1 cut(s) 107
MlsI TGGCCA 1 cut(s) 393
MluCI AATT 2 cut(s) 413, 432
MluNI TGGCCA 1 cut(s) 393
MnlI CCTC 2 cut(s) 307, 450
Mox20I TGGCCA 1 cut(s) 393
MscI TGGCCA 1 cut(s) 393
MslI CAYNNNNRTG 1 cut(s) 305
Msp20I TGGCCA 1 cut(s) 393
MspI CCGG 1 cut(s) 322
MspR9I CCNGG 1 cut(s) 271
MunI CAATTG 1 cut(s) 432
MvaI CCWGG 1 cut(s) 271
MwoI GCNNNNNNNGC 6 cut(s) 83, 111, 177, 354, 399, 408
NdeII GATC 2 cut(s) 79, 339
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 1 cut(s) 341
NspI RCATGY 1 cut(s) 262
PaeR7I CTCGAG 3 cut(s) 59, 106, 166
PciI ACATGT 1 cut(s) 258
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PfeI GAWTC 1 cut(s) 49
PkrI GCNGC 5 cut(s) 88, 113, 182, 228, 404
PscI ACATGT 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 269
PspFI CCCAGC 1 cut(s) 229
PspGI CCWGG 1 cut(s) 269
PspN4I GGNNCC 1 cut(s) 341
PspPI GGNCC 2 cut(s) 30, 232
PspXI VCTCGAGB 3 cut(s) 59, 106, 166
PstNI CAGNNNCTG 1 cut(s) 408
PsuI RGATCY 1 cut(s) 339
RseI CAYNNNNRTG 1 cut(s) 305
SacI GAGCTC 1 cut(s) 107
SatI GCNGC 5 cut(s) 87, 112, 181, 227, 403
Sau3AI GATC 2 cut(s) 79, 339
Sau96I GGNCC 2 cut(s) 30, 232
ScrFI CCNGG 1 cut(s) 271
SduI GDGCHC 1 cut(s) 107
SetI ASST 7 cut(s) 96, 107, 155, 167, 185, 228, 272
Sfr274I CTCGAG 3 cut(s) 59, 106, 166
SlaI CTCGAG 3 cut(s) 59, 106, 166
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 3 cut(s) 59, 106, 166
SmoI CTYRAG 3 cut(s) 59, 106, 166
Sse9I AATT 2 cut(s) 413, 432
SsiI CCGC 3 cut(s) 16, 77, 86
SspMI CTAG 1 cut(s) 264
SstI GAGCTC 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 269
TaaI ACNGT 1 cut(s) 40
TaqI TCGA 3 cut(s) 60, 107, 167
TasI AATT 2 cut(s) 413, 432
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 1 cut(s) 49
TscAI CASTG 1 cut(s) 413
TseI GCWGC 4 cut(s) 111, 180, 226, 402
TspDTI ATGAA 2 cut(s) 137, 300
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 1 cut(s) 413
XbaI TCTAGA 1 cut(s) 263
XceI RCATGY 1 cut(s) 262
XhoI CTCGAG 3 cut(s) 59, 106, 166
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.