RLG00000033932

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008886
Physical Location & Seq
Reverse (-)
34338952 .. 34339714
763 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033932

Sequence Viewer

Length: 564 bp
ATGAGCGGCGAATCAGGCAGCGAGGGTGGGACGGAGCTTGAGCAGCCCGAGAATGAACTCGTCTGGGAAAATGGCCAAACAATTGGTGAGGTTGGAATACGGTGTTTTGATGGCAATGCTGATGATACAGATGGTGGTGTTGATGTTGAGTTGTGCTGTGCAGAGCTGCTGGGCGAGAGAGTGAAGGATTGGATCGAAGCCGAGAGAGAGGCCATAACGAACATCCCAGTTTTGGGAAGATGGGTTATTGCTGCAAGCATTACAGAAGTGATTGACATGTCTAGAACCTGGAAGAAAATAGATGAAGAGATTGAAGCCACTGTTATGCCCGAGGATTACCGGAATAACAAGGTTTGGATCCTGTGCAATGACTGCAATGACACAACCGAAGTTTACTTCCACATTATTGGCCAGAAATGTAACCACTGCAAATTATACAACACCCACACATTGCCCTTCCGGTTCTTCCTCAATGATCAGAAGATGTTTCCCACGAATATGTCCAGTCCAGTTGGTGCAGCGAAAGCTTGTACCCTCAAATGTGCCCTGGAAAGGGGAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000731 GO:0002039 GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019941 GO:0019985 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031347 GO:0031348 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032102 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045862 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0090304 GO:0140096 GO:1900424 GO:1900425 GO:1901360 GO:1901362 GO:1901483 GO:1901485 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-C3HC4 zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

188

Amino Acids

20.96

Weight (kDa)

4.5

Isoelectric Point (pI)

49.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zinc_ribbon_6 PF14599 91 - 148 1.4e-25 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 6
AciI CCGC 1 cut(s) 6
AclWI GGATC 3 cut(s) 200, 352, 365
AcoI YGGCCR 2 cut(s) 73, 409
AfaI GTAC 1 cut(s) 532
AfiI CCNNNNNNNGG 4 cut(s) 232, 233, 552, 553
AflIII ACRYGT 1 cut(s) 276
AgsI TTSAA 1 cut(s) 314
AjnI CCWGG 2 cut(s) 287, 546
AluBI AGCT 3 cut(s) 37, 166, 527
AluI AGCT 3 cut(s) 37, 166, 527
AlwI GGATC 3 cut(s) 200, 352, 365
Ama87I CYCGRG 2 cut(s) 47, 329
AoxI GGCC 3 cut(s) 73, 210, 409
ApeKI GCWGC 5 cut(s) 18, 43, 166, 251, 518
AsuHPI GGTGA 1 cut(s) 98
AvaI CYCGRG 2 cut(s) 47, 329
BaeGI GKGCMC 1 cut(s) 547
BalI TGGCCA 2 cut(s) 75, 411
BamHI GGATCC 1 cut(s) 357
BbvI GCAGC 5 cut(s) 30, 55, 153, 238, 530
BccI CCATC 3 cut(s) 104, 125, 234
BciT130I CCWGG 2 cut(s) 289, 548
BclI TGATCA 1 cut(s) 475
BfaI CTAG 1 cut(s) 282
BisI GCNGC 6 cut(s) 7, 19, 44, 167, 252, 519
BlsI GCNGC 6 cut(s) 8, 20, 45, 168, 253, 520
Bme1390I CCNGG 2 cut(s) 289, 548
BmeT110I CYCGRG 2 cut(s) 47, 329
BmiI GGNNCC 1 cut(s) 359
BmrFI CCNGG 2 cut(s) 289, 548
BmrI ACTGGG 1 cut(s) 221
BmuI ACTGGG 1 cut(s) 221
BpuEI CTTGAG 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 330, 546
BsaWI WCCGGW 2 cut(s) 339, 459
Bsc4I CCNNNNNNNGG 4 cut(s) 232, 233, 552, 553
Bse1I ACTGG 3 cut(s) 227, 504, 509
Bse3DI GCAATG 4 cut(s) 121, 373, 382, 449
BseBI CCWGG 2 cut(s) 289, 548
BseDI CCNNGG 2 cut(s) 330, 546
BseGI GGATG 1 cut(s) 222
BseLI CCNNNNNNNGG 4 cut(s) 232, 233, 552, 553
BseMI GCAATG 4 cut(s) 121, 373, 382, 449
BseNI ACTGG 3 cut(s) 227, 504, 509
BseSI GKGCMC 1 cut(s) 547
BseXI GCAGC 5 cut(s) 30, 55, 153, 238, 530
BseYI CCCAGC 1 cut(s) 169
BsgI GTGCAG 2 cut(s) 180, 537
BshFI GGCC 3 cut(s) 75, 212, 411
BsiHKCI CYCGRG 2 cut(s) 47, 329
BsiSI CCGG 2 cut(s) 340, 460
BslFI GGGAC 1 cut(s) 43
BslI CCNNNNNNNGG 4 cut(s) 232, 233, 552, 553
BsmFI GGGAC 1 cut(s) 43
BsnI GGCC 3 cut(s) 75, 212, 411
BsoBI CYCGRG 2 cut(s) 47, 329
Bsp1286I GDGCHC 1 cut(s) 547
Bsp143I GATC 3 cut(s) 192, 357, 475
BspACI CCGC 1 cut(s) 6
BspANI GGCC 3 cut(s) 75, 212, 411
BspLI GGNNCC 1 cut(s) 359
BspPI GGATC 3 cut(s) 200, 352, 365
BsrBI CCGCTC 1 cut(s) 6
BsrDI GCAATG 4 cut(s) 121, 373, 382, 449
BsrI ACTGG 3 cut(s) 227, 504, 509
BssECI CCNNGG 2 cut(s) 330, 546
BssMI GATC 3 cut(s) 192, 357, 475
Bst2UI CCWGG 2 cut(s) 289, 548
Bst4CI ACNGT 2 cut(s) 102, 322
Bst6I CTCTTC 1 cut(s) 300
BstAPI GCANNNNNTGC 1 cut(s) 372
BstC8I GCNNGC 1 cut(s) 256
BstF5I GGATG 1 cut(s) 222
BstKTI GATC 3 cut(s) 195, 360, 478
BstMBI GATC 3 cut(s) 192, 357, 475
BstMWI GCNNNNNNNGC 4 cut(s) 15, 43, 372, 524
BstNI CCWGG 2 cut(s) 289, 548
BstNSI RCATGY 1 cut(s) 280
BstSCI CCNGG 2 cut(s) 287, 546
BstSLI GKGCMC 1 cut(s) 547
BstV1I GCAGC 5 cut(s) 30, 55, 153, 238, 530
BstX2I RGATCY 1 cut(s) 357
BstXI CCANNNNNNTGG 2 cut(s) 83, 407
BstYI RGATCY 1 cut(s) 357
BsuRI GGCC 3 cut(s) 75, 212, 411
BtsCI GGATG 1 cut(s) 222
BtsI GCAGTG 1 cut(s) 424
BtsIMutI CAGTG 2 cut(s) 318, 424
Cac8I GCNNGC 1 cut(s) 256
Csp6I GTAC 1 cut(s) 531
CviAII CATG 1 cut(s) 277
CviJI RGCY 9 cut(s) 37, 46, 75, 166, 200, 212, 317, 411, 527
CviKI_1 RGCY 9 cut(s) 37, 46, 75, 166, 200, 212, 317, 411, 527
CviQI GTAC 1 cut(s) 531
DpnI GATC 3 cut(s) 194, 359, 477
DpnII GATC 3 cut(s) 192, 357, 475
EaeI YGGCCR 2 cut(s) 73, 409
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco88I CYCGRG 2 cut(s) 47, 329
EcoRII CCWGG 2 cut(s) 287, 546
FaeI CATG 1 cut(s) 280
FaiI YATR 5 cut(s) 215, 278, 326, 436, 500
FalI AAGNNNNNCTT 1 cut(s) 544
FaqI GGGAC 1 cut(s) 43
FatI CATG 1 cut(s) 276
FbaI TGATCA 1 cut(s) 475
Fnu4HI GCNGC 6 cut(s) 7, 19, 44, 167, 252, 519
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 6 cut(s) 7, 19, 44, 167, 252, 519
FspBI CTAG 1 cut(s) 282
GluI GCNGC 6 cut(s) 7, 19, 44, 167, 252, 519
GsaI CCCAGC 1 cut(s) 173
HaeIII GGCC 3 cut(s) 75, 212, 411
HapII CCGG 2 cut(s) 340, 460
Hin1II CATG 1 cut(s) 280
HindIII AAGCTT 1 cut(s) 525
HinfI GANTC 1 cut(s) 11
HpaII CCGG 2 cut(s) 340, 460
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 1 cut(s) 480
Hpy188III TCNNGA 1 cut(s) 282
Hpy8I GTNNAC 1 cut(s) 394
HpyAV CCTTC 2 cut(s) 178, 466
HpyCH4III ACNGT 2 cut(s) 102, 322
HpyCH4V TGCA 6 cut(s) 161, 254, 366, 375, 429, 518
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 43, 372, 524
Hsp92II CATG 1 cut(s) 280
Ksp22I TGATCA 1 cut(s) 475
Kzo9I GATC 3 cut(s) 192, 357, 475
LmnI GCTCC 1 cut(s) 34
Lsp1109I GCAGC 5 cut(s) 30, 55, 153, 238, 530
MaeI CTAG 1 cut(s) 282
MaeIII GTNAC 1 cut(s) 419
MalI GATC 3 cut(s) 194, 359, 477
MbiI CCGCTC 1 cut(s) 6
MboI GATC 3 cut(s) 192, 357, 475
MboII GAAGA 5 cut(s) 249, 304, 317, 457, 493
MfeI CAATTG 1 cut(s) 81
MflI RGATCY 1 cut(s) 357
MhlI GDGCHC 1 cut(s) 547
MlsI TGGCCA 2 cut(s) 75, 411
MluCI AATT 2 cut(s) 81, 431
MluNI TGGCCA 2 cut(s) 75, 411
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 6 cut(s) 16, 82, 202, 325, 479, 545
Mox20I TGGCCA 2 cut(s) 75, 411
MscI TGGCCA 2 cut(s) 75, 411
MslI CAYNNNNRTG 2 cut(s) 323, 497
Msp20I TGGCCA 2 cut(s) 75, 411
MspI CCGG 2 cut(s) 340, 460
MspR9I CCNGG 2 cut(s) 289, 548
MunI CAATTG 1 cut(s) 81
MvaI CCWGG 2 cut(s) 289, 548
MwoI GCNNNNNNNGC 4 cut(s) 15, 43, 372, 524
NdeII GATC 3 cut(s) 192, 357, 475
NlaIII CATG 1 cut(s) 280
NlaIV GGNNCC 1 cut(s) 359
NmeAIII GCCGAG 1 cut(s) 226
NspI RCATGY 1 cut(s) 280
PciI ACATGT 1 cut(s) 276
PfeI GAWTC 1 cut(s) 11
PkrI GCNGC 6 cut(s) 8, 20, 45, 168, 253, 520
PscI ACATGT 1 cut(s) 276
Psp6I CCWGG 2 cut(s) 287, 546
PspFI CCCAGC 1 cut(s) 169
PspGI CCWGG 2 cut(s) 287, 546
PspN4I GGNNCC 1 cut(s) 359
PsuI RGATCY 1 cut(s) 357
RsaI GTAC 1 cut(s) 532
RsaNI GTAC 1 cut(s) 531
RseI CAYNNNNRTG 2 cut(s) 323, 497
SatI GCNGC 6 cut(s) 7, 19, 44, 167, 252, 519
Sau3AI GATC 3 cut(s) 192, 357, 475
ScrFI CCNGG 2 cut(s) 289, 548
SduI GDGCHC 1 cut(s) 547
SetI ASST 6 cut(s) 39, 93, 168, 290, 354, 529
SmiMI CAYNNNNRTG 2 cut(s) 323, 497
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
Sse9I AATT 2 cut(s) 81, 431
SsiI CCGC 1 cut(s) 6
SspMI CTAG 1 cut(s) 282
StyD4I CCNGG 2 cut(s) 287, 546
TaaI ACNGT 2 cut(s) 102, 322
TaqI TCGA 1 cut(s) 195
TasI AATT 2 cut(s) 81, 431
TauI GCSGC 1 cut(s) 9
TfiI GAWTC 1 cut(s) 11
TscAI CASTG 2 cut(s) 325, 431
TseI GCWGC 5 cut(s) 18, 43, 166, 251, 518
TspDTI ATGAA 2 cut(s) 69, 318
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 2 cut(s) 325, 431
XbaI TCTAGA 1 cut(s) 281
XceI RCATGY 1 cut(s) 280
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.