Rh7AG232600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0008886
Physical Location & Seq
Forward (+)
22455262 .. 22455621
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG232600.1

Sequence Viewer

Length: 360 bp
ATGGGTATGGCGTTTCCATCTCCATCTCCTCGCGCCTCTTGCTCTCATCCTCGTCCTCAGGGCACGAGCAAGATGACCATGAAACCGAACCTGAACCCAATGTTCTCCCTCCACCGCAAGACGGCGCGGGCCAAAACGACAGTCAAGATTCAAGAAATAATCGAGCAGAGAGCGGCGGAGGATCAGGCGGCGAGGGTGGGACGGAGCTCGAGCAGCCCAAGAATGAACTCGTCGGGAAAAATGGTGTTCCAAAGCTTAGACCGTAGCTCAAGCAGTCCAAGCAGCTTCAATGGTGGGTTTGGCGTTTCTTATGATTTCCGGAATCTCACTTCTCTCTTCATTCATAGGCCAAACTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.14

Weight (kDa)

11.19

Isoelectric Point (pI)

75.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 173
AccII CGCG 2 cut(s) 33, 127
AccIII TCCGGA 1 cut(s) 318
AciI CCGC 5 cut(s) 115, 127, 173, 176, 188
AclWI GGATC 1 cut(s) 189
AfiI CCNNNNNNNGG 1 cut(s) 121
AgsI TTSAA 2 cut(s) 152, 289
AluBI AGCT 4 cut(s) 207, 255, 267, 285
AluI AGCT 4 cut(s) 207, 255, 267, 285
Alw21I GWGCWC 1 cut(s) 209
AlwI GGATC 1 cut(s) 189
Ama87I CYCGRG 1 cut(s) 208
Aor13HI TCCGGA 1 cut(s) 318
AoxI GGCC 2 cut(s) 129, 347
ApeKI GCWGC 2 cut(s) 213, 282
ArsI GACNNNNNNTTYG 2 cut(s) 126, 158
AspLEI GCGC 2 cut(s) 35, 127
AspS9I GGNCC 1 cut(s) 129
AvaI CYCGRG 1 cut(s) 208
AxyI CCTNAGG 1 cut(s) 57
BaeGI GKGCMC 1 cut(s) 65
BanII GRGCYC 1 cut(s) 209
BauI CACGAG 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 2 cut(s) 225, 294
BccI CCATC 2 cut(s) 25, 31
BceAI ACGGC 1 cut(s) 138
BisI GCNGC 4 cut(s) 174, 189, 214, 283
BlsI GCNGC 4 cut(s) 175, 190, 215, 284
BmeT110I CYCGRG 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 253
BsaWI WCCGGW 1 cut(s) 318
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse21I CCTNAGG 1 cut(s) 57
BseAI TCCGGA 1 cut(s) 318
BseGI GGATG 1 cut(s) 46
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 18
BseSI GKGCMC 1 cut(s) 65
BseXI GCAGC 2 cut(s) 225, 294
Bsh1236I CGCG 2 cut(s) 33, 127
BshFI GGCC 2 cut(s) 131, 349
BsiHKAI GWGCWC 1 cut(s) 209
BsiHKCI CYCGRG 1 cut(s) 208
BsiSI CCGG 1 cut(s) 319
BslFI GGGAC 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 213
BsnI GGCC 2 cut(s) 131, 349
BsoBI CYCGRG 1 cut(s) 208
Bsp1286I GDGCHC 2 cut(s) 65, 209
Bsp13I TCCGGA 1 cut(s) 318
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 5 cut(s) 115, 127, 173, 176, 188
BspANI GGCC 2 cut(s) 131, 349
BspCNI CTCAG 1 cut(s) 70
BspEI TCCGGA 1 cut(s) 318
BspFNI CGCG 2 cut(s) 33, 127
BspPI GGATC 1 cut(s) 189
BsrBI CCGCTC 1 cut(s) 173
BssMI GATC 1 cut(s) 181
BssSI CACGAG 1 cut(s) 64
Bst2BI CACGAG 1 cut(s) 64
Bst4CI ACNGT 2 cut(s) 142, 263
Bst6I CTCTTC 1 cut(s) 341
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 2 cut(s) 57, 256
BstF5I GGATG 1 cut(s) 46
BstFNI CGCG 2 cut(s) 33, 127
BstHHI GCGC 2 cut(s) 35, 127
BstKTI GATC 1 cut(s) 184
BstMBI GATC 1 cut(s) 181
BstMWI GCNNNNNNNGC 3 cut(s) 39, 213, 279
BstSLI GKGCMC 1 cut(s) 65
BstUI CGCG 2 cut(s) 33, 127
BstV1I GCAGC 2 cut(s) 225, 294
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 2 cut(s) 131, 349
BtsCI GGATG 1 cut(s) 46
Cac8I GCNNGC 1 cut(s) 129
CfoI GCGC 2 cut(s) 35, 127
Cfr13I GGNCC 1 cut(s) 129
CviAII CATG 1 cut(s) 79
CviJI RGCY 7 cut(s) 131, 207, 216, 255, 267, 285, 349
CviKI_1 RGCY 7 cut(s) 131, 207, 216, 255, 267, 285, 349
DdeI CTNAG 2 cut(s) 57, 256
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
EciI GGCGGA 1 cut(s) 191
Ecl136II GAGCTC 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 209
Eco53kI GAGCTC 1 cut(s) 207
Eco81I CCTNAGG 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 208
EcoICRI GAGCTC 1 cut(s) 207
EcoT38I GRGCYC 1 cut(s) 209
FaeI CATG 1 cut(s) 82
FaiI YATR 4 cut(s) 8, 80, 312, 345
FaqI GGGAC 1 cut(s) 213
FatI CATG 1 cut(s) 78
FauI CCCGC 1 cut(s) 120
Fnu4HI GCNGC 4 cut(s) 174, 189, 214, 283
FokI GGATG 1 cut(s) 33
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 4 cut(s) 174, 189, 214, 283
GlaI GCGC 2 cut(s) 34, 126
GluI GCNGC 4 cut(s) 174, 189, 214, 283
HaeIII GGCC 2 cut(s) 131, 349
HapII CCGG 1 cut(s) 319
HhaI GCGC 2 cut(s) 35, 127
Hin1II CATG 1 cut(s) 82
Hin6I GCGC 2 cut(s) 33, 125
HinP1I GCGC 2 cut(s) 33, 125
HindIII AAGCTT 1 cut(s) 253
HinfI GANTC 2 cut(s) 148, 322
HpaII CCGG 1 cut(s) 319
Hpy188III TCNNGA 4 cut(s) 145, 152, 234, 319
Hpy99I CGWCG 1 cut(s) 235
HpyCH4III ACNGT 2 cut(s) 142, 263
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 213, 279
HpyF3I CTNAG 2 cut(s) 57, 256
Hsp92II CATG 1 cut(s) 82
HspAI GCGC 2 cut(s) 33, 125
Kpn2I TCCGGA 1 cut(s) 318
Kzo9I GATC 1 cut(s) 181
LmnI GCTCC 1 cut(s) 204
LpnPI CCDG 4 cut(s) 44, 104, 170, 332
Lsp1109I GCAGC 2 cut(s) 225, 294
MalI GATC 1 cut(s) 183
MbiI CCGCTC 1 cut(s) 173
MboI GATC 1 cut(s) 181
MboII GAAGA 1 cut(s) 328
MhlI GDGCHC 2 cut(s) 65, 209
MnlI CCTC 7 cut(s) 39, 46, 60, 66, 119, 172, 186
MroI TCCGGA 1 cut(s) 318
MspI CCGG 1 cut(s) 319
MvnI CGCG 2 cut(s) 33, 127
MwoI GCNNNNNNNGC 3 cut(s) 39, 213, 279
NdeII GATC 1 cut(s) 181
NlaIII CATG 1 cut(s) 82
PaeR7I CTCGAG 1 cut(s) 208
PfeI GAWTC 2 cut(s) 148, 322
PkrI GCNGC 4 cut(s) 175, 190, 215, 284
Psp124BI GAGCTC 1 cut(s) 209
PspPI GGNCC 1 cut(s) 129
PspXI VCTCGAGB 1 cut(s) 208
SacI GAGCTC 1 cut(s) 209
SatI GCNGC 4 cut(s) 174, 189, 214, 283
Sau3AI GATC 1 cut(s) 181
Sau96I GGNCC 1 cut(s) 129
SduI GDGCHC 2 cut(s) 65, 209
SetI ASST 5 cut(s) 93, 209, 257, 269, 287
Sfr274I CTCGAG 1 cut(s) 208
SlaI CTCGAG 1 cut(s) 208
SmlI CTYRAG 2 cut(s) 208, 268
SmoI CTYRAG 2 cut(s) 208, 268
SsiI CCGC 5 cut(s) 115, 127, 173, 176, 188
SstI GAGCTC 1 cut(s) 209
TaaI ACNGT 2 cut(s) 142, 263
TaqI TCGA 2 cut(s) 162, 209
TauI GCSGC 2 cut(s) 176, 191
TfiI GAWTC 2 cut(s) 148, 322
TseI GCWGC 2 cut(s) 213, 282
TspDTI ATGAA 4 cut(s) 95, 239, 328, 332
TspGWI ACGGA 1 cut(s) 217
XhoI CTCGAG 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.