Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001385

Physical Location & Seq

Genomic Coordinates Reverse (-)

22087007 .. 22087798

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1133800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAAAAACTTCTGAAACTTGTCTCTGCTGTTCTTCTTATCCTCTCAACCCTAGCTTCATCCCAGCCCCAGGTCACTGAGCTCTTCTATTCCGGCTTCAAAGACGCGGGTTCCAATCTAACCCTATCCGGCGTTGCGGATATTGAAAAAACCGGCATGTTAAAATTAACCAACCACACCAGCAGGCTAATGGGTCATGCTTTCTACACTTCACCAATTCAGTTCAAGAACTCAACCGTCGGCAAAGCCTTCTCTTTTTCGACCTCATTCGTCTTCACCATCGTCCCCGAGTATCCGAAGCTGGGTGGCCACGGCATGGCCTTCACGATCGCCCCCTCCAAGGATCTCAACTCTCTTCCCAGCCAATACCTCGGTCTTCTCAATGGTACTGACGTCGGTAAATTCTCGACTCATATCTTCGCAGTCGAATTCGACACGGTTCAAGATTTCGAGTTTGGTGATATCAACGATAACCATGTCGGAATCGACATCAACAGCTTGAAATCAAATGCCTCAGCTGCTGCAGCTTACTACAAAGACTCTGTTTCGAAACAGAGTCTTAACCTCAAATCTGGGAAACCAATTCAAGCATGGATCGACTACGATTCGAGTCGAAATCTCATGAACGTTACGATTTCGCCCTCTTCTACAAAACCTAAAATTCCACTTCTTTCTTTTCAAGTGGATCTTGTTGAATTATGTGGCCAAGTGGCCATATACTTTAGAATAAACAAACCAAAAGTGGACAACATATTTCCTTGTTTTGGGGAGGAAAACATGGATCTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

264

Amino Acids

28.76

Weight (kDa)

6.2

Isoelectric Point (pI)

29.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	29 - 236	2.8e-64	Legume lectin domain
Lectin_L-type_dom	PF18483	38 - 214	2e-08	Legume lectin beta-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55550
fragaria_vesca	FvH4_6g13180 FvH4_7g22900
malus_domestica	MD01G1137300.v1.1 MD01G1137400.v1.1 MD01G1137500.v1.1 MD01G1137600.v1.1 MD01G1137700.v1.1 MD04G1133700.v1.1 MD04G1133800.v1.1 MD12G1147700.v1.1
prunus_persica	Prupe.2G238700_v2.0.a1
pyrus_communis	pycom01g15830 pycom01g15860 pycom01g15870 pycom01g15880 pycom04g12170 pycom12g14140
rosa_chinensis	RchiOBHm_Chr1g0368061 RchiOBHm_Chr3g0465661 RchiOBHm_Chr3g0465671 RchiOBHm_Chr3g0465791 RchiOBHm_Chr4g0404141
rosa_laevigata	RLG00000024618 RLG00000024629 RLG00000024630 RLG00000027242
rosa_multiflora	Rmu_sc0000550.1_g000019 Rmu_sc0005103.1_g000004 Rmu_sc0007705.1_g000006 Rmu_sc0007705.1_g000016 Rmu_sc0007705.1_g000021 Rmu_sc0013273.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288890 Rroxscaffold_6G00414940
rosa_rugosa	Rorug01G0338700 Rorug03G0078100 Rorug03G0078200
rosa_samantha	Rh1AG345700 Rh1BG308000 Rh1CG323600 Rh1DG340100 Rh3BG143600 Rh3CG144600 Rh3CG144700 Rh3CG144800 Rh3CG145700 Rh3DG144900 Rh4AG123100 Rh4BG116200
rosa_wichuraiana	Rw1G030770 Rw3G011660 Rw3G011700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	396
AccB7I	CCANNNNNTGG	1 cut(s)	316
AccII	CGCG	1 cut(s)	107
AciI	CCGC	2 cut(s)	107, 137
AclI	AACGTT	1 cut(s)	627
AclWI	GGATC	4 cut(s)	351, 602, 693, 789
AcoI	YGGCCR	3 cut(s)	307, 703, 711
AcsI	RAATTY	3 cut(s)	401, 428, 660
AcyI	GRCGYC	1 cut(s)	393
AfaI	GTAC	1 cut(s)	388
AfiI	CCNNNNNNNGG	5 cut(s)	70, 302, 316, 340, 764
AgsI	TTSAA	8 cut(s)	100, 146, 226, 443, 502, 587, 680, 695
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	6 cut(s)	56, 82, 301, 498, 518, 527
AluI	AGCT	6 cut(s)	56, 82, 301, 498, 518, 527
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	28
AlwI	GGATC	4 cut(s)	351, 602, 693, 789
AlwNI	CAGNNNCTG	1 cut(s)	521
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	4 cut(s)	307, 318, 703, 711
ApeKI	GCWGC	3 cut(s)	518, 521, 524
ApoI	RAATTY	3 cut(s)	401, 428, 660
Asp700I	GAANNNNTTC	1 cut(s)	9
AsuHPI	GGTGA	3 cut(s)	204, 268, 470
AsuII	TTCGAA	1 cut(s)	548
AvaI	CYCGRG	1 cut(s)	287
BaeI	ACNNNNGTAYC	2 cut(s)	378, 411
BalI	TGGCCA	3 cut(s)	309, 705, 713
BanII	GRGCYC	1 cut(s)	84
BbsI	GAAGAC	2 cut(s)	265, 368
Bbv12I	GWGCWC	1 cut(s)	84
BbvCI	CCTCAGC	1 cut(s)	514
BbvI	GCAGC	3 cut(s)	505, 508, 536
BccI	CCATC	1 cut(s)	287
BceAI	ACGGC	1 cut(s)	328
BciT130I	CCWGG	1 cut(s)	71
BciVI	GTATCC	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	28
BfaI	CTAG	1 cut(s)	53
BfmI	CTRYAG	1 cut(s)	522
BfuI	GTATCC	1 cut(s)	303
BisI	GCNGC	3 cut(s)	519, 522, 525
BlsI	GCNGC	3 cut(s)	520, 523, 526
Bme1390I	CCNGG	1 cut(s)	71
BmeT110I	CYCGRG	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	71
BpiI	GAAGAC	2 cut(s)	265, 368
Bpu10I	CCTNAGC	1 cut(s)	514
Bpu14I	TTCGAA	1 cut(s)	548
BsaHI	GRCGYC	1 cut(s)	393
BsaJI	CCNNGG	4 cut(s)	69, 310, 339, 370
Bsc4I	CCNNNNNNNGG	5 cut(s)	70, 302, 316, 340, 764
Bse118I	RCCGGY	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	4 cut(s)	69, 310, 339, 370
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	5 cut(s)	70, 302, 316, 340, 764
BseMII	CTCAG	2 cut(s)	69, 528
BseXI	GCAGC	3 cut(s)	505, 508, 536
BseYI	CCCAGC	3 cut(s)	63, 301, 359
Bsh1236I	CGCG	1 cut(s)	107
Bsh1285I	CGRYCG	1 cut(s)	330
BshFI	GGCC	4 cut(s)	309, 320, 705, 713
BsiEI	CGRYCG	1 cut(s)	330
BsiHKAI	GWGCWC	1 cut(s)	84
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	3 cut(s)	93, 129, 153
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	5 cut(s)	70, 302, 316, 340, 764
BsmAI	GTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	4 cut(s)	309, 320, 705, 713
BsoBI	CYCGRG	1 cut(s)	287
Bsp119I	TTCGAA	1 cut(s)	548
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	5 cut(s)	327, 343, 594, 685, 781
BspACI	CCGC	2 cut(s)	107, 137
BspANI	GGCC	4 cut(s)	309, 320, 705, 713
BspCNI	CTCAG	2 cut(s)	70, 527
BspFNI	CGCG	1 cut(s)	107
BspHI	TCATGA	1 cut(s)	621
BspLI	GGNNCC	1 cut(s)	112
BspMAI	CTGCAG	1 cut(s)	526
BspPI	GGATC	4 cut(s)	351, 602, 693, 789
BspQI	GCTCTTC	1 cut(s)	89
BspT104I	TTCGAA	1 cut(s)	548
BsrFI	RCCGGY	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	4 cut(s)	69, 310, 339, 370
BssMI	GATC	5 cut(s)	327, 343, 594, 685, 781
BssNI	GRCGYC	1 cut(s)	393
BssT1I	CCWWGG	1 cut(s)	339
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	2 cut(s)	238, 439
Bst6I	CTCTTC	3 cut(s)	89, 360, 649
BstACI	GRCGYC	1 cut(s)	393
BstBI	TTCGAA	1 cut(s)	548
BstC8I	GCNNGC	1 cut(s)	185
BstDEI	CTNAG	2 cut(s)	78, 514
BstDSI	CCRYGG	1 cut(s)	310
BstF5I	GGATG	1 cut(s)	59
BstFNI	CGCG	1 cut(s)	107
BstKTI	GATC	5 cut(s)	330, 346, 597, 688, 784
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	5 cut(s)	327, 343, 594, 685, 781
BstMCI	CGRYCG	1 cut(s)	330
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 524
BstNI	CCWGG	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	69
BstSFI	CTRYAG	1 cut(s)	522
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	3 cut(s)	505, 508, 536
BstV2I	GAAGAC	2 cut(s)	265, 368
BstX2I	RGATCY	3 cut(s)	343, 685, 781
BstYI	RGATCY	3 cut(s)	343, 685, 781
BsuI	GTATCC	1 cut(s)	303
BsuRI	GGCC	4 cut(s)	309, 320, 705, 713
BtgI	CCRYGG	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	59
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	185
CaiI	CAGNNNCTG	1 cut(s)	521
CciI	TCATGA	1 cut(s)	621
Cfr10I	RCCGGY	1 cut(s)	152
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	387
CviAII	CATG	7 cut(s)	157, 197, 316, 476, 591, 622, 778
CviQI	GTAC	1 cut(s)	387
DdeI	CTNAG	2 cut(s)	78, 514
DpnI	GATC	5 cut(s)	329, 345, 596, 687, 783
DpnII	GATC	5 cut(s)	327, 343, 594, 685, 781
EaeI	YGGCCR	3 cut(s)	307, 703, 711
Eam1104I	CTCTTC	3 cut(s)	89, 360, 649
EarI	CTCTTC	3 cut(s)	89, 360, 649
Ecl136II	GAGCTC	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	84
Eco32I	GATATC	1 cut(s)	463
Eco53kI	GAGCTC	1 cut(s)	82
Eco88I	CYCGRG	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	82
EcoRI	GAATTC	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	69
EcoRV	GATATC	1 cut(s)	463
EcoT14I	CCWWGG	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	7 cut(s)	160, 200, 319, 479, 594, 625, 781
FalI	AAGNNNNNCTT	2 cut(s)	672, 704
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	7 cut(s)	156, 196, 315, 475, 590, 621, 777
FauI	CCCGC	1 cut(s)	100
Fnu4HI	GCNGC	3 cut(s)	519, 522, 525
FokI	GGATG	1 cut(s)	46
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	3 cut(s)	519, 522, 525
FspBI	CTAG	1 cut(s)	53
GluI	GCNGC	3 cut(s)	519, 522, 525
GsaI	CCCAGC	3 cut(s)	67, 305, 363
HaeIII	GGCC	4 cut(s)	309, 320, 705, 713
HapII	CCGG	3 cut(s)	93, 129, 153
HgaI	GACGC	1 cut(s)	113
Hin1I	GRCGYC	1 cut(s)	393
Hin1II	CATG	7 cut(s)	160, 200, 319, 479, 594, 625, 781
HinfI	GANTC	6 cut(s)	409, 483, 539, 556, 605, 610
HpaII	CCGG	3 cut(s)	93, 129, 153
HphI	GGTGA	3 cut(s)	204, 268, 470
Hpy166II	GTNNAC	1 cut(s)	745
Hpy188I	TCNGA	3 cut(s)	15, 297, 482
Hpy188III	TCNNGA	5 cut(s)	226, 325, 406, 443, 622
Hpy8I	GTNNAC	1 cut(s)	745
Hpy99I	CGWCG	2 cut(s)	242, 398
HpyAV	CCTTC	2 cut(s)	259, 331
HpyCH4III	ACNGT	2 cut(s)	238, 439
HpyCH4IV	ACGT	2 cut(s)	393, 627
HpyCH4V	TGCA	1 cut(s)	524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 524
HpyF3I	CTNAG	2 cut(s)	78, 514
HpySE526I	ACGT	2 cut(s)	393, 627
Hsp92I	GRCGYC	1 cut(s)	393
Hsp92II	CATG	7 cut(s)	160, 200, 319, 479, 594, 625, 781
Kzo9I	GATC	5 cut(s)	327, 343, 594, 685, 781
LguI	GCTCTTC	1 cut(s)	89
Lsp1109I	GCAGC	3 cut(s)	505, 508, 536
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	2 cut(s)	393, 627
MaeIII	GTNAC	2 cut(s)	73, 628
MalI	GATC	5 cut(s)	329, 345, 596, 687, 783
MboI	GATC	5 cut(s)	327, 343, 594, 685, 781
MboII	GAAGA	7 cut(s)	26, 76, 265, 347, 368, 409, 636
MflI	RGATCY	3 cut(s)	343, 685, 781
MhlI	GDGCHC	1 cut(s)	84
MlsI	TGGCCA	3 cut(s)	309, 705, 713
MluCI	AATT	7 cut(s)	164, 216, 401, 428, 582, 660, 695
MluNI	TGGCCA	3 cut(s)	309, 705, 713
MlyI	GAGTC	4 cut(s)	403, 533, 565, 619
MmeI	TCCRAC	1 cut(s)	460
MnlI	CCTC	8 cut(s)	53, 274, 346, 380, 523, 575, 652, 763
Mox20I	TGGCCA	3 cut(s)	309, 705, 713
MroXI	GAANNNNTTC	1 cut(s)	9
MscI	TGGCCA	3 cut(s)	309, 705, 713
MseI	TTAA	3 cut(s)	161, 167, 561
Msp20I	TGGCCA	3 cut(s)	309, 705, 713
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	3 cut(s)	93, 129, 153
MspR9I	CCNGG	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	518, 524
NdeII	GATC	5 cut(s)	327, 343, 594, 685, 781
NlaIII	CATG	7 cut(s)	160, 200, 319, 479, 594, 625, 781
NlaIV	GGNNCC	1 cut(s)	112
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	160
NspV	TTCGAA	1 cut(s)	548
PagI	TCATGA	1 cut(s)	621
PciSI	GCTCTTC	1 cut(s)	89
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	2 cut(s)	483, 605
PflMI	CCANNNNNTGG	1 cut(s)	316
PkrI	GCNGC	3 cut(s)	520, 523, 526
Ple19I	CGATCG	1 cut(s)	330
PleI	GAGTC	4 cut(s)	403, 533, 564, 618
PpsI	GAGTC	4 cut(s)	403, 533, 564, 618
Psp124BI	GAGCTC	1 cut(s)	84
Psp1406I	AACGTT	1 cut(s)	627
Psp6I	CCWGG	1 cut(s)	69
PspFI	CCCAGC	3 cut(s)	63, 301, 359
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	112
PstI	CTGCAG	1 cut(s)	526
PstNI	CAGNNNCTG	1 cut(s)	521
PsuI	RGATCY	3 cut(s)	343, 685, 781
PvuI	CGATCG	1 cut(s)	330
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
SacI	GAGCTC	1 cut(s)	84
SapI	GCTCTTC	1 cut(s)	89
SaqAI	TTAA	3 cut(s)	161, 167, 561
SatI	GCNGC	3 cut(s)	519, 522, 525
Sau3AI	GATC	5 cut(s)	327, 343, 594, 685, 781
SchI	GAGTC	4 cut(s)	403, 533, 565, 619
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	84
SfcI	CTRYAG	1 cut(s)	522
SfuI	TTCGAA	1 cut(s)	548
Sse9I	AATT	7 cut(s)	164, 216, 401, 428, 582, 660, 695
SsiI	CCGC	2 cut(s)	107, 137
SspMI	CTAG	1 cut(s)	53
SstI	GAGCTC	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	2 cut(s)	238, 439
TaiI	ACGT	2 cut(s)	396, 630
TaqII	GACCGA	1 cut(s)	362
TasI	AATT	7 cut(s)	164, 216, 401, 428, 582, 660, 695
TfiI	GAWTC	2 cut(s)	483, 605
Tru1I	TTAA	3 cut(s)	161, 167, 561
Tru9I	TTAA	3 cut(s)	161, 167, 561
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	3 cut(s)	518, 521, 524
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	2 cut(s)	48, 638
TspRI	CASTG	1 cut(s)	82
Van91I	CCANNNNNTGG	1 cut(s)	316
XapI	RAATTY	3 cut(s)	401, 428, 660
XceI	RCATGY	1 cut(s)	160
XcmI	CCANNNNNNNNNTGG	2 cut(s)	187, 588
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	1 cut(s)	53
ZraI	GACGTC	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.