Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001385

Physical Location & Seq

Genomic Coordinates Forward (+)

26602644 .. 26605144

Gene Structure 2501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG123100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1911 bp

ATGGCAGATCCTCTGATATTGTTCTCTGCTCTTCTTCTGCTCTCAATACCAGTTTCATCTCAGGTCAGTGAGCTCTTCTTTCCTGGTTTTAAACATGTGGGCACTAACATAACCTTGAAAGGAATAGCAGATATCGCAAAAGATCTTGGCATTCTCAAATTGACCCATGACAACATTAGATGGGTGGGTAGTGCCTTTTACACTTCACCAATTCGATTCAAAAACTCCACAAATGGCAAGGCCTTCTCTTTCTCCACCTCATTTGCTTTCACTATAGTTCCTGAGTATCCAAAGCTCGGCGGCCATGGCTTTGCTTTCACAATCGCCCCATCTAAGGATCTCATTTCTCTGCCTGGTCGATATCTAGGTCTCTTCAATAGCAGTGATATTGGCAACTCCTCCACACACATCTTTGCAATCGAATTCGACACTGTTCAAGACTTTGACTCTGGAGATATCAATGACAATCATGTAGGGATCGACCTGAACAGCTTGATATCAAATGCCTCAGCTGAAGCTGCATATTACACAGATGCTACAACCAAACAAAACTTAAACCTCAAGAGTGGGAAAGCAATCCAAGCCTGGATAGACTATGATTCAGCTCAAAATGTAATCAATGTCACAATCTCACCACTCTCTTCCAAACCCAAAACCCCACTTATTTCTTTCCATGTAGATCTCTCCCTGATTTTCGAAGAGTTCATGTATGTTGGGTTCTCGGCTTCAACAGGTCTGCTTGCCAGCTCCCACTACATTCTGGGCTGGAGCTTCAAGATTGATGGACAGCCCCAACCCCTTCATCTGGCCTCTCTTCCTAAAATTCCAATACCCAGAAAAGATCACTCAGCTCTGAAAATCGGAGTCTCAGTGGCCGCCGTTATTCTTGCTCTATCTGTAATCTCCATATCCATCTACATATTCATCAGGAAGCTCAAGAACGCCGAGCCAATCGAGTCATGGGAGCTCGAGCTCGGCCCACACAGATACTCCTACCAAGAACTGAAAAAAGCCACAAAAAGGTTCAGAGGAAAAGAGCTCCTCGGCGAAGGCGGGTTCGGCCAAGTGTTCAAAGGAACACTCCCCAGTTCCAAAACCCAAGTAGCCGTCAAGCGAATCTCGAACGATTCGAAACAGGGTCTAAGGGAATTCGTGGCTGAAATCGCAAGCATAGGTAGGCTCCGGCATAGAAATCTAGTCCAATTACTGGGATGGTGTCGCCGAAGAGGCCACCTAATGCTGGTCTATGATTACATGGAAAATGGAAGCTTGGATACTTATTTGTTTGATAAGCCGAAATCGGTGTTGAGTTGGGAACAGAGATTTCAGATCATAAAGGGGATTGCTTCCGCGCTTCATTACCTACACGACGGGTTTGAGCAGGTTGTGCTTCACAGAGATGTCAAGGCCAGCAATGTGTTGCTGGATAGCGAAATGAATGGAAGGCTTGGGGATTTTGGGTTGGCGAGGCTGCATGAACATGGGTCGAACTCGAATACGACTAGGGTCGCGGGTACGCTCGGGTATTTGGCTCCGGAGTTGGCCACAACCGGGAAGGCGAGTACGGGTTCGGATGTGTATGCGTTCGGCGCGCTTTTGCTGGAGGTGGTATGCGGGCGGAGGCCCATTGAGCCCAACGCGATGCCCGAGGAGTTGGTTTTGGTGGACTGGGTTTGGAATAGGTATAAAGAGGGGAAGATACTTGGGGTGGTGGATCGGAGGCTTGATGGGGTTTATGATGAGCGGGAAGTGGTGATGGTGGTGAAGTTGGGGTTGATGTGCTCGGCCCATGGGCCGAGAGCCAGGCCTAATATGAGGCTGGTGGTGAGGTGTTTGGATGGGGAGGTTGAGATTCCGGAGGAACTGAGACCACCAAGTGGGTCCCATGTGACCGGGTTTGATGACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

636

Amino Acids

70.24

Weight (kDa)

7.74

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	26 - 272	2e-74	Legume lectin domain
Lectin_L-type_dom	PF18483	35 - 249	5.6e-11	Legume lectin beta-barrel domain
PK_Tyr_Ser-Thr	PF07714	345 - 611	2.5e-46	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	345 - 544	1.8e-45	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55550
fragaria_vesca	FvH4_6g13180 FvH4_7g22900
malus_domestica	MD01G1137300.v1.1 MD01G1137400.v1.1 MD01G1137500.v1.1 MD01G1137600.v1.1 MD01G1137700.v1.1 MD04G1133700.v1.1 MD04G1133800.v1.1 MD12G1147700.v1.1
prunus_persica	Prupe.2G238700_v2.0.a1
pyrus_communis	pycom01g15830 pycom01g15860 pycom01g15870 pycom01g15880 pycom04g12170 pycom12g14140
rosa_chinensis	RchiOBHm_Chr1g0368061 RchiOBHm_Chr3g0465661 RchiOBHm_Chr3g0465671 RchiOBHm_Chr3g0465791 RchiOBHm_Chr4g0404141
rosa_laevigata	RLG00000024618 RLG00000024629 RLG00000024630 RLG00000027242
rosa_multiflora	Rmu_sc0000550.1_g000019 Rmu_sc0005103.1_g000004 Rmu_sc0007705.1_g000006 Rmu_sc0007705.1_g000016 Rmu_sc0007705.1_g000021 Rmu_sc0013273.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288890 Rroxscaffold_6G00414940
rosa_rugosa	Rorug01G0338700 Rorug03G0078100 Rorug03G0078200
rosa_samantha	Rh1AG345700 Rh1BG308000 Rh1CG323600 Rh1DG340100 Rh3BG143600 Rh3CG144600 Rh3CG144700 Rh3CG144800 Rh3CG145700 Rh3DG144900 Rh4AG123100 Rh4BG116200
rosa_wichuraiana	Rw1G030770 Rw3G011660 Rw3G011700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1372
AccB7I	CCANNNNNTGG	2 cut(s)	1207, 1877
AccBSI	CCGCTC	1 cut(s)	1744
AccII	CGCG	4 cut(s)	1352, 1511, 1592, 1640
AccIII	TCCGGA	2 cut(s)	1534, 1855
AciI	CCGC	8 cut(s)	300, 876, 1053, 1350, 1511, 1614, 1618, 1744
AclWI	GGATC	4 cut(s)	2, 345, 485, 1722
AcoI	YGGCCR	4 cut(s)	301, 873, 1060, 1542
AcsI	RAATTY	3 cut(s)	422, 822, 1148
AcuI	CTGAAG	1 cut(s)	534
AdeI	CACNNNGTG	1 cut(s)	1877
AfaI	GTAC	2 cut(s)	1516, 1564
AfiI	CCNNNNNNNGG	8 cut(s)	296, 334, 805, 1020, 1207, 1240, 1551, 1877
AflIII	ACRYGT	1 cut(s)	94
AgsI	TTSAA	7 cut(s)	118, 220, 376, 437, 729, 775, 1072
AjnI	CCWGG	4 cut(s)	82, 352, 584, 1802
Alw21I	GWGCWC	5 cut(s)	75, 969, 975, 1041, 1784
Alw26I	GTCTC	3 cut(s)	374, 871, 1861
AlwI	GGATC	4 cut(s)	2, 345, 485, 1722
Ama87I	CYCGRG	3 cut(s)	968, 1520, 1646
Aor13HI	TCCGGA	2 cut(s)	1534, 1855
ApeKI	GCWGC	2 cut(s)	518, 1471
ApoI	RAATTY	3 cut(s)	422, 822, 1148
AspLEI	GCGC	3 cut(s)	1354, 1592, 1594
AspS9I	GGNCC	5 cut(s)	977, 1623, 1786, 1793, 1881
AsuC2I	CCSGG	2 cut(s)	1552, 1894
AsuHPI	GGTGA	5 cut(s)	198, 624, 1765, 1774, 1837
AsuII	TTCGAA	2 cut(s)	696, 1130
AvaI	CYCGRG	3 cut(s)	968, 1520, 1646
AvaII	GGWCC	1 cut(s)	1881
BaeGI	GKGCMC	1 cut(s)	104
BalI	TGGCCA	1 cut(s)	1544
BanII	GRGCYC	5 cut(s)	75, 969, 975, 1041, 1635
BarI	GAAGNNNNNNTAC	2 cut(s)	1258, 1290
Bbv12I	GWGCWC	5 cut(s)	75, 969, 975, 1041, 1784
BbvCI	CCTCAGC	1 cut(s)	508
BbvI	GCAGC	2 cut(s)	505, 1458
BccI	CCATC	8 cut(s)	174, 337, 776, 920, 1206, 1721, 1750, 1832
BceAI	ACGGC	2 cut(s)	863, 1091
BciT130I	CCWGG	4 cut(s)	84, 354, 586, 1804
BciVI	GTATCC	2 cut(s)	297, 1267
BcnI	CCSGG	2 cut(s)	1552, 1894
BcoDI	GTCTC	3 cut(s)	374, 871, 1861
BfaI	CTAG	3 cut(s)	365, 1196, 1503
BfmI	CTRYAG	1 cut(s)	273
BfuAI	ACCTGC	1 cut(s)	1372
BfuI	GTATCC	2 cut(s)	297, 1267
BglI	GCCNNNNNGGC	1 cut(s)	1227
BglII	AGATCT	2 cut(s)	142, 679
BisI	GCNGC	4 cut(s)	301, 519, 876, 1472
BlsI	GCNGC	4 cut(s)	302, 520, 877, 1473
Bme1390I	CCNGG	6 cut(s)	84, 354, 586, 1552, 1804, 1894
Bme18I	GGWCC	1 cut(s)	1881
BmeT110I	CYCGRG	3 cut(s)	968, 1520, 1646
BmgT120I	GGNCC	5 cut(s)	977, 1623, 1786, 1793, 1881
BmiI	GGNNCC	4 cut(s)	1181, 1533, 1882, 1883
BmrFI	CCNGG	6 cut(s)	84, 354, 586, 1552, 1804, 1894
BmrI	ACTGGG	3 cut(s)	1080, 1217, 1678
BmsI	GCATC	2 cut(s)	523, 1632
BmuI	ACTGGG	3 cut(s)	1080, 1217, 1678
BoxI	GACNNNNGTC	1 cut(s)	1505
BpmI	CTGGAG	3 cut(s)	471, 787, 1622
Bpu10I	CCTNAGC	1 cut(s)	508
Bpu14I	TTCGAA	2 cut(s)	696, 1130
BpuEI	CTTGAG	2 cut(s)	545, 920
BpuMI	CCSGG	2 cut(s)	1552, 1894
BsaI	GGTCTC	2 cut(s)	374, 1861
BsaJI	CCNNGG	4 cut(s)	304, 1042, 1647, 1789
BsaWI	WCCGGW	2 cut(s)	1534, 1855
BsaXI	ACNNNNNCTCC	4 cut(s)	855, 885, 974, 1004
Bsc4I	CCNNNNNNNGG	8 cut(s)	296, 334, 805, 1020, 1207, 1240, 1551, 1877
Bse1I	ACTGG	4 cut(s)	50, 1086, 1212, 1673
Bse3DI	GCAATG	1 cut(s)	1420
BseAI	TCCGGA	2 cut(s)	1534, 1855
BseBI	CCWGG	4 cut(s)	84, 354, 586, 1804
BseDI	CCNNGG	4 cut(s)	304, 1042, 1647, 1789
BseGI	GGATG	3 cut(s)	1217, 1579, 1843
BseLI	CCNNNNNNNGG	8 cut(s)	296, 334, 805, 1020, 1207, 1240, 1551, 1877
BseMI	GCAATG	1 cut(s)	1420
BseMII	CTCAG	6 cut(s)	74, 273, 522, 861, 882, 1856
BseNI	ACTGG	4 cut(s)	50, 1086, 1212, 1673
BsePI	GCGCGC	1 cut(s)	1590
BseRI	GAGGAG	3 cut(s)	388, 1031, 1664
BseSI	GKGCMC	1 cut(s)	104
BseXI	GCAGC	2 cut(s)	505, 1458
Bsh1236I	CGCG	4 cut(s)	1352, 1511, 1592, 1640
BsiHKAI	GWGCWC	5 cut(s)	75, 969, 975, 1041, 1784
BsiHKCI	CYCGRG	3 cut(s)	968, 1520, 1646
BsiSI	CCGG	5 cut(s)	1183, 1535, 1551, 1856, 1893
BslFI	GGGAC	1 cut(s)	1867
BslI	CCNNNNNNNGG	8 cut(s)	296, 334, 805, 1020, 1207, 1240, 1551, 1877
BsmAI	GTCTC	3 cut(s)	374, 871, 1861
BsmFI	GGGAC	1 cut(s)	1867
BsmI	GAATGC	1 cut(s)	150
Bso31I	GGTCTC	2 cut(s)	374, 1861
BsoBI	CYCGRG	3 cut(s)	968, 1520, 1646
Bsp119I	TTCGAA	2 cut(s)	696, 1130
Bsp1286I	GDGCHC	7 cut(s)	75, 104, 969, 975, 1041, 1635, 1784
Bsp13I	TCCGGA	2 cut(s)	1534, 1855
Bsp143I	GATC	8 cut(s)	7, 142, 337, 477, 679, 841, 1329, 1714
Bsp19I	CCATGG	2 cut(s)	304, 1789
BspACI	CCGC	8 cut(s)	300, 876, 1053, 1350, 1511, 1614, 1618, 1744
BspCNI	CTCAG	6 cut(s)	73, 274, 521, 860, 881, 1857
BspEI	TCCGGA	2 cut(s)	1534, 1855
BspFNI	CGCG	4 cut(s)	1352, 1511, 1592, 1640
BspLI	GGNNCC	4 cut(s)	1181, 1533, 1882, 1883
BspMI	ACCTGC	1 cut(s)	1372
BspPI	GGATC	4 cut(s)	2, 345, 485, 1722
BspQI	GCTCTTC	2 cut(s)	36, 80
BspT104I	TTCGAA	2 cut(s)	696, 1130
BspTNI	GGTCTC	2 cut(s)	374, 1861
BsrBI	CCGCTC	1 cut(s)	1744
BsrDI	GCAATG	1 cut(s)	1420
BsrI	ACTGG	4 cut(s)	50, 1086, 1212, 1673
BssECI	CCNNGG	4 cut(s)	304, 1042, 1647, 1789
BssHII	GCGCGC	1 cut(s)	1590
BssMI	GATC	8 cut(s)	7, 142, 337, 477, 679, 841, 1329, 1714
BssT1I	CCWWGG	2 cut(s)	304, 1789
Bst2UI	CCWGG	4 cut(s)	84, 354, 586, 1804
Bst4CI	ACNGT	1 cut(s)	433
Bst6I	CTCTTC	7 cut(s)	36, 80, 377, 646, 693, 819, 1219
BstAPI	GCANNNNNTGC	1 cut(s)	1387
BstBI	TTCGAA	2 cut(s)	696, 1130
BstC8I	GCNNGC	6 cut(s)	741, 745, 1168, 1411, 1592, 1616
BstDEI	CTNAG	8 cut(s)	60, 282, 333, 508, 847, 868, 1142, 1865
BstDSI	CCRYGG	2 cut(s)	304, 1789
BstF5I	GGATG	3 cut(s)	1217, 1579, 1843
BstFNI	CGCG	4 cut(s)	1352, 1511, 1592, 1640
BstHHI	GCGC	3 cut(s)	1354, 1592, 1594
BstKTI	GATC	8 cut(s)	10, 145, 340, 480, 682, 844, 1332, 1717
BstMAI	GTCTC	3 cut(s)	374, 871, 1861
BstMBI	GATC	8 cut(s)	7, 142, 337, 477, 679, 841, 1329, 1714
BstNI	CCWGG	4 cut(s)	84, 354, 586, 1804
BstNSI	RCATGY	1 cut(s)	98
BstPAI	GACNNNNGTC	1 cut(s)	1505
BstSCI	CCNGG	6 cut(s)	82, 352, 584, 1550, 1802, 1892
BstSFI	CTRYAG	1 cut(s)	273
BstSLI	GKGCMC	1 cut(s)	104
BstUI	CGCG	4 cut(s)	1352, 1511, 1592, 1640
BstV1I	GCAGC	2 cut(s)	505, 1458
BstX2I	RGATCY	4 cut(s)	7, 142, 337, 679
BstYI	RGATCY	4 cut(s)	7, 142, 337, 679
BsuI	GTATCC	2 cut(s)	297, 1267
BtgI	CCRYGG	2 cut(s)	304, 1789
BtgZI	GCGATG	1 cut(s)	1655
BtsCI	GGATG	3 cut(s)	1217, 1579, 1843
BtsI	GCAGTG	1 cut(s)	388
BtsIMutI	CAGTG	4 cut(s)	73, 388, 429, 876
BveI	ACCTGC	1 cut(s)	1372
Cac8I	GCNNGC	6 cut(s)	741, 745, 1168, 1411, 1592, 1616
CfoI	GCGC	3 cut(s)	1354, 1592, 1594
Cfr13I	GGNCC	5 cut(s)	977, 1623, 1786, 1793, 1881
Csp6I	GTAC	2 cut(s)	1515, 1563
CspCI	CAANNNNNGTGG	2 cut(s)	244, 279
CviQI	GTAC	2 cut(s)	1515, 1563
DdeI	CTNAG	8 cut(s)	60, 282, 333, 508, 847, 868, 1142, 1865
DpnI	GATC	8 cut(s)	9, 144, 339, 479, 681, 843, 1331, 1716
DpnII	GATC	8 cut(s)	7, 142, 337, 477, 679, 841, 1329, 1714
DraI	TTTAAA	1 cut(s)	91
DraIII	CACNNNGTG	1 cut(s)	1877
EaeI	YGGCCR	4 cut(s)	301, 873, 1060, 1542
Eam1104I	CTCTTC	7 cut(s)	36, 80, 377, 646, 693, 819, 1219
EarI	CTCTTC	7 cut(s)	36, 80, 377, 646, 693, 819, 1219
EciI	GGCGGA	1 cut(s)	1633
Ecl136II	GAGCTC	4 cut(s)	73, 967, 973, 1039
Eco130I	CCWWGG	2 cut(s)	304, 1789
Eco147I	AGGCCT	2 cut(s)	242, 1807
Eco24I	GRGCYC	5 cut(s)	75, 969, 975, 1041, 1635
Eco31I	GGTCTC	2 cut(s)	374, 1861
Eco32I	GATATC	4 cut(s)	133, 362, 457, 498
Eco47I	GGWCC	1 cut(s)	1881
Eco53kI	GAGCTC	4 cut(s)	73, 967, 973, 1039
Eco57I	CTGAAG	1 cut(s)	534
Eco88I	CYCGRG	3 cut(s)	968, 1520, 1646
EcoICRI	GAGCTC	4 cut(s)	73, 967, 973, 1039
EcoO109I	RGGNCCY	1 cut(s)	1881
EcoRI	GAATTC	2 cut(s)	422, 1148
EcoRII	CCWGG	4 cut(s)	82, 352, 584, 1802
EcoRV	GATATC	4 cut(s)	133, 362, 457, 498
EcoT14I	CCWWGG	2 cut(s)	304, 1789
EcoT38I	GRGCYC	5 cut(s)	75, 969, 975, 1041, 1635
ErhI	CCWWGG	2 cut(s)	304, 1789
FaqI	GGGAC	1 cut(s)	1867
FauI	CCCGC	4 cut(s)	1046, 1504, 1607, 1737
Fnu4HI	GCNGC	4 cut(s)	301, 519, 876, 1472
FokI	GGATG	3 cut(s)	1224, 1586, 1850
FriOI	GRGCYC	5 cut(s)	75, 969, 975, 1041, 1635
Fsp4HI	GCNGC	4 cut(s)	301, 519, 876, 1472
FspBI	CTAG	3 cut(s)	365, 1196, 1503
GlaI	GCGC	3 cut(s)	1353, 1591, 1593
GluI	GCNGC	4 cut(s)	301, 519, 876, 1472
GsuI	CTGGAG	3 cut(s)	471, 787, 1622
HapII	CCGG	5 cut(s)	1183, 1535, 1551, 1856, 1893
HhaI	GCGC	3 cut(s)	1354, 1592, 1594
Hin6I	GCGC	3 cut(s)	1352, 1590, 1592
HinP1I	GCGC	3 cut(s)	1352, 1590, 1592
HindIII	AAGCTT	1 cut(s)	1267
HinfI	GANTC	8 cut(s)	216, 446, 599, 864, 956, 1116, 1127, 1852
HpaII	CCGG	5 cut(s)	1183, 1535, 1551, 1856, 1893
HphI	GGTGA	5 cut(s)	198, 624, 1765, 1774, 1837
Hpy166II	GTNNAC	1 cut(s)	1666
Hpy188I	TCNGA	7 cut(s)	15, 855, 863, 1028, 1329, 1573, 1719
Hpy8I	GTNNAC	1 cut(s)	1666
Hpy99I	CGWCG	1 cut(s)	1373
HpyAV	CCTTC	5 cut(s)	253, 809, 1043, 1437, 1549
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4V	TGCA	3 cut(s)	416, 521, 1474
HpyF3I	CTNAG	8 cut(s)	60, 282, 333, 508, 847, 868, 1142, 1865
HspAI	GCGC	3 cut(s)	1352, 1590, 1592
KflI	GGGWCCC	1 cut(s)	1881
Kpn2I	TCCGGA	2 cut(s)	1534, 1855
Kzo9I	GATC	8 cut(s)	7, 142, 337, 477, 679, 841, 1329, 1714
LguI	GCTCTTC	2 cut(s)	36, 80
LmnI	GCTCC	6 cut(s)	752, 768, 964, 1044, 1185, 1537
Lsp1109I	GCAGC	2 cut(s)	505, 1458
LweI	GCATC	2 cut(s)	523, 1632
MaeI	CTAG	3 cut(s)	365, 1196, 1503
MaeIII	GTNAC	2 cut(s)	622, 1888
MalI	GATC	8 cut(s)	9, 144, 339, 479, 681, 843, 1331, 1716
MbiI	CCGCTC	1 cut(s)	1744
MboI	GATC	8 cut(s)	7, 142, 337, 477, 679, 841, 1329, 1714
MboII	GAAGA	9 cut(s)	23, 26, 67, 364, 633, 710, 806, 1236, 1708
MflI	RGATCY	4 cut(s)	7, 142, 337, 679
MhlI	GDGCHC	7 cut(s)	75, 104, 969, 975, 1041, 1635, 1784
MlsI	TGGCCA	1 cut(s)	1544
MluCI	AATT	6 cut(s)	158, 210, 422, 822, 1148, 1202
MluNI	TGGCCA	1 cut(s)	1544
MlyI	GAGTC	3 cut(s)	440, 873, 965
Mox20I	TGGCCA	1 cut(s)	1544
MroI	TCCGGA	2 cut(s)	1534, 1855
MscI	TGGCCA	1 cut(s)	1544
MseI	TTAA	2 cut(s)	90, 554
MslI	CAYNNNNRTG	2 cut(s)	1398, 1479
Msp20I	TGGCCA	1 cut(s)	1544
MspA1I	CMGCKG	1 cut(s)	512
MspI	CCGG	5 cut(s)	1183, 1535, 1551, 1856, 1893
MspR9I	CCNGG	6 cut(s)	84, 354, 586, 1552, 1804, 1894
Mva1269I	GAATGC	1 cut(s)	150
MvaI	CCWGG	4 cut(s)	84, 354, 586, 1804
MvnI	CGCG	4 cut(s)	1352, 1511, 1592, 1640
NciI	CCSGG	2 cut(s)	1552, 1894
NcoI	CCATGG	2 cut(s)	304, 1789
NdeII	GATC	8 cut(s)	7, 142, 337, 477, 679, 841, 1329, 1714
NlaIV	GGNNCC	4 cut(s)	1181, 1533, 1882, 1883
NmeAIII	GCCGAG	7 cut(s)	276, 701, 954, 970, 1023, 1763, 1821
NmuCI	GTSAC	2 cut(s)	622, 1888
NspI	RCATGY	1 cut(s)	98
NspV	TTCGAA	2 cut(s)	696, 1130
PaeR7I	CTCGAG	1 cut(s)	968
PauI	GCGCGC	1 cut(s)	1590
PceI	AGGCCT	2 cut(s)	242, 1807
PciI	ACATGT	1 cut(s)	94
PciSI	GCTCTTC	2 cut(s)	36, 80
PcsI	WCGNNNNNNNCGW	2 cut(s)	1127, 1644
PctI	GAATGC	1 cut(s)	150
PfeI	GAWTC	5 cut(s)	216, 599, 1116, 1127, 1852
PflMI	CCANNNNNTGG	2 cut(s)	1207, 1877
PkrI	GCNGC	4 cut(s)	302, 520, 877, 1473
PleI	GAGTC	3 cut(s)	440, 872, 964
PpsI	GAGTC	3 cut(s)	440, 872, 964
PpuMI	RGGWCCY	1 cut(s)	1881
PscI	ACATGT	1 cut(s)	94
PshAI	GACNNNNGTC	1 cut(s)	1505
Psp124BI	GAGCTC	4 cut(s)	75, 969, 975, 1041
Psp5II	RGGWCCY	1 cut(s)	1881
Psp6I	CCWGG	4 cut(s)	82, 352, 584, 1802
PspGI	CCWGG	4 cut(s)	82, 352, 584, 1802
PspN4I	GGNNCC	4 cut(s)	1181, 1533, 1882, 1883
PspPI	GGNCC	5 cut(s)	977, 1623, 1786, 1793, 1881
PspPPI	RGGWCCY	1 cut(s)	1881
PspXI	VCTCGAGB	1 cut(s)	968
PsrI	GAACNNNNNNTAC	2 cut(s)	701, 733
PsuI	RGATCY	4 cut(s)	7, 142, 337, 679
PteI	GCGCGC	1 cut(s)	1590
PvuII	CAGCTG	1 cut(s)	512
RsaI	GTAC	2 cut(s)	1516, 1564
RsaNI	GTAC	2 cut(s)	1515, 1563
RseI	CAYNNNNRTG	2 cut(s)	1398, 1479
SacI	GAGCTC	4 cut(s)	75, 969, 975, 1041
SapI	GCTCTTC	2 cut(s)	36, 80
SaqAI	TTAA	2 cut(s)	90, 554
SatI	GCNGC	4 cut(s)	301, 519, 876, 1472
Sau3AI	GATC	8 cut(s)	7, 142, 337, 477, 679, 841, 1329, 1714
Sau96I	GGNCC	5 cut(s)	977, 1623, 1786, 1793, 1881
SchI	GAGTC	3 cut(s)	440, 873, 965
ScrFI	CCNGG	6 cut(s)	84, 354, 586, 1552, 1804, 1894
SduI	GDGCHC	7 cut(s)	75, 104, 969, 975, 1041, 1635, 1784
SfaNI	GCATC	2 cut(s)	523, 1632
SfcI	CTRYAG	1 cut(s)	273
Sfr274I	CTCGAG	1 cut(s)	968
SfuI	TTCGAA	2 cut(s)	696, 1130
SinI	GGWCC	1 cut(s)	1881
SlaI	CTCGAG	1 cut(s)	968
SmiMI	CAYNNNNRTG	2 cut(s)	1398, 1479
SmlI	CTYRAG	3 cut(s)	560, 935, 968
SmoI	CTYRAG	3 cut(s)	560, 935, 968
Sse9I	AATT	6 cut(s)	158, 210, 422, 822, 1148, 1202
SseBI	AGGCCT	2 cut(s)	242, 1807
SsiI	CCGC	8 cut(s)	300, 876, 1053, 1350, 1511, 1614, 1618, 1744
SspMI	CTAG	3 cut(s)	365, 1196, 1503
SstI	GAGCTC	4 cut(s)	75, 969, 975, 1041
StuI	AGGCCT	2 cut(s)	242, 1807
StyD4I	CCNGG	6 cut(s)	82, 352, 584, 1550, 1802, 1892
StyI	CCWWGG	2 cut(s)	304, 1789
TaaI	ACNGT	1 cut(s)	433
TasI	AATT	6 cut(s)	158, 210, 422, 822, 1148, 1202
TauI	GCSGC	2 cut(s)	303, 878
TfiI	GAWTC	5 cut(s)	216, 599, 1116, 1127, 1852
Tru1I	TTAA	2 cut(s)	90, 554
Tru9I	TTAA	2 cut(s)	90, 554
TscAI	CASTG	4 cut(s)	73, 388, 436, 876
TseFI	GTSAC	2 cut(s)	622, 1888
TseI	GCWGC	2 cut(s)	518, 1471
Tsp45I	GTSAC	2 cut(s)	622, 1888
TspDTI	ATGAA	7 cut(s)	45, 694, 791, 913, 1346, 1451, 1491
TspRI	CASTG	4 cut(s)	73, 388, 436, 876
Van91I	CCANNNNNTGG	2 cut(s)	1207, 1877
VpaK11BI	GGWCC	1 cut(s)	1881
XapI	RAATTY	3 cut(s)	422, 822, 1148
XceI	RCATGY	1 cut(s)	98
XcmI	CCANNNNNNNNNTGG	1 cut(s)	957
XhoI	CTCGAG	1 cut(s)	968
XspI	CTAG	3 cut(s)	365, 1196, 1503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.