Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001385

Physical Location & Seq

Genomic Coordinates Reverse (-)

16676819 .. 16677628

Gene Structure 810 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g14140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCAAATATTCTGAAAATATTCTGTGTTGTTCTTCTTCTCCTCGGAATCTTAGCTTCATCCCCGGCGACTGAGCTCTTCTATCCCGGATTCAAACACGTGGGTTCCAATATAACCTTATCCGGTGCGGCAGAGATCGAAAAAACCGGCATGTTAAAATTAACCAACCGCACCAGCAGGCTGATGGGTCATGCTTTCTACAATTCACCAATTCAGTTCAAGAACTTAACCAACGGCAAAGCCTTCTCCTTTTCGACCTCATTCGTCTTCACCATCATCCCCGAGTATCCAAAACTCGGTGGCCACGGCATGGCCTTCACAATCTCCCCCTCCAAAGACCTCAACTCTCTTCCAAGCCAATACCTCGGTCTCCTCAATCGCACTGAAGTCGGCAACTTCTCCACTCACATCTTCGCAGTCGAGTTCGACACGGTTCAAGATTTTGAGTTCGGTGATATCAACGACAATCATGTTGGAATCGACATCAACAGCTTGAAGTCAAATGCCTCGGCTGCTGCAGCTTACTACAAAGACTCTGTTTCGAAACAGAATCTTAATCTCAAATCTGGGAAACCAATTCTAGCATGGATCGACTACGATTCGGGTCGAAATCTCATGAACGTAACGATTTCGCCATCTTCTTCAAAGCCCAAAATTCCAATTCTTTCTTTCCATGTGGATCTTTCTCCGATTCTTCAAGAATTTATGTACGTTGGGTTTTCGGCTTCGACCGGTCTGCTTGCTAGCTCCCATTACATATCAGGGTGGAGCTTCAAATCGATCGATCGATGGAGAAACCGGACTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

270

Amino Acids

29.59

Weight (kDa)

9.04

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	26 - 261	1.5e-78	Legume lectin domain
Lectin_L-type_dom	PF18483	36 - 251	5.1e-10	Legume lectin beta-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55550
fragaria_vesca	FvH4_6g13180 FvH4_7g22900
malus_domestica	MD01G1137300.v1.1 MD01G1137400.v1.1 MD01G1137500.v1.1 MD01G1137600.v1.1 MD01G1137700.v1.1 MD04G1133700.v1.1 MD04G1133800.v1.1 MD12G1147700.v1.1
prunus_persica	Prupe.2G238700_v2.0.a1
pyrus_communis	pycom01g15830 pycom01g15860 pycom01g15870 pycom01g15880 pycom04g12170 pycom12g14140
rosa_chinensis	RchiOBHm_Chr1g0368061 RchiOBHm_Chr3g0465661 RchiOBHm_Chr3g0465671 RchiOBHm_Chr3g0465791 RchiOBHm_Chr4g0404141
rosa_laevigata	RLG00000024618 RLG00000024629 RLG00000024630 RLG00000027242
rosa_multiflora	Rmu_sc0000550.1_g000019 Rmu_sc0005103.1_g000004 Rmu_sc0007705.1_g000006 Rmu_sc0007705.1_g000016 Rmu_sc0007705.1_g000021 Rmu_sc0013273.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288890 Rroxscaffold_6G00414940
rosa_rugosa	Rorug01G0338700 Rorug03G0078100 Rorug03G0078200
rosa_samantha	Rh1AG345700 Rh1BG308000 Rh1CG323600 Rh1DG340100 Rh3BG143600 Rh3CG144600 Rh3CG144700 Rh3CG144800 Rh3CG145700 Rh3DG144900 Rh4AG123100 Rh4BG116200
rosa_wichuraiana	Rw1G030770 Rw3G011660 Rw3G011700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	310
AciI	CCGC	2 cut(s)	128, 169
AclWI	GGATC	2 cut(s)	596, 687
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	2 cut(s)	654, 701
AcuI	CTGAAG	1 cut(s)	405
AcvI	CACGTG	1 cut(s)	100
AfaI	GTAC	1 cut(s)	710
AfiI	CCNNNNNNNGG	2 cut(s)	296, 310
AflIII	ACRYGT	1 cut(s)	97
AgeI	ACCGGT	1 cut(s)	731
AgsI	TTSAA	7 cut(s)	94, 220, 437, 496, 645, 698, 775
AluBI	AGCT	6 cut(s)	56, 76, 492, 521, 747, 771
AluI	AGCT	6 cut(s)	56, 76, 492, 521, 747, 771
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	374
AlwI	GGATC	2 cut(s)	596, 687
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	2 cut(s)	301, 312
ApeKI	GCWGC	3 cut(s)	512, 515, 518
ApoI	RAATTY	2 cut(s)	654, 701
AsiGI	ACCGGT	1 cut(s)	731
Asp700I	GAANNNNTTC	1 cut(s)	20
AsuC2I	CCSGG	2 cut(s)	65, 87
AsuHPI	GGTGA	3 cut(s)	198, 262, 464
AsuII	TTCGAA	1 cut(s)	542
AsuNHI	GCTAGC	1 cut(s)	743
AvaI	CYCGRG	1 cut(s)	281
BalI	TGGCCA	1 cut(s)	303
BanII	GRGCYC	1 cut(s)	78
BbrPI	CACGTG	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	3 cut(s)	499, 502, 530
BccI	CCATC	4 cut(s)	178, 281, 643, 783
BceAI	ACGGC	2 cut(s)	250, 322
BcgI	CGANNNNNNTGC	4 cut(s)	370, 404, 718, 752
BciVI	GTATCC	1 cut(s)	297
BcnI	CCSGG	2 cut(s)	65, 87
BcoDI	GTCTC	1 cut(s)	374
BfaI	CTAG	2 cut(s)	581, 744
BfmI	CTRYAG	1 cut(s)	516
BfuI	GTATCC	1 cut(s)	297
BisI	GCNGC	4 cut(s)	129, 513, 516, 519
BlsI	GCNGC	4 cut(s)	130, 514, 517, 520
Bme1390I	CCNGG	2 cut(s)	65, 87
BmeT110I	CYCGRG	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	2 cut(s)	65, 87
BmtI	GCTAGC	1 cut(s)	747
BpiI	GAAGAC	1 cut(s)	259
Bpu14I	TTCGAA	1 cut(s)	542
BpuMI	CCSGG	2 cut(s)	65, 87
Bsa29I	ATCGAT	3 cut(s)	779, 783, 787
BsaAI	YACGTR	1 cut(s)	100
BsaI	GGTCTC	1 cut(s)	374
BsaJI	CCNNGG	5 cut(s)	43, 63, 304, 364, 507
BsaWI	WCCGGW	3 cut(s)	122, 731, 798
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 310
Bse118I	RCCGGY	2 cut(s)	146, 731
BseCI	ATCGAT	3 cut(s)	779, 783, 787
BseDI	CCNNGG	5 cut(s)	43, 63, 304, 364, 507
BseGI	GGATG	2 cut(s)	59, 276
BseLI	CCNNNNNNNGG	2 cut(s)	296, 310
BseMII	CTCAG	1 cut(s)	63
BseRI	GAGGAG	2 cut(s)	32, 362
BseXI	GCAGC	3 cut(s)	499, 502, 530
Bsh1285I	CGRYCG	3 cut(s)	732, 783, 787
BshFI	GGCC	2 cut(s)	303, 314
BshTI	ACCGGT	1 cut(s)	731
BshVI	ATCGAT	3 cut(s)	779, 783, 787
BsiEI	CGRYCG	3 cut(s)	732, 783, 787
BsiHKAI	GWGCWC	1 cut(s)	78
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	6 cut(s)	65, 87, 123, 147, 732, 799
BslI	CCNNNNNNNGG	2 cut(s)	296, 310
BsmAI	GTCTC	1 cut(s)	374
BsnI	GGCC	2 cut(s)	303, 314
Bso31I	GGTCTC	1 cut(s)	374
BsoBI	CYCGRG	1 cut(s)	281
Bsp119I	TTCGAA	1 cut(s)	542
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	5 cut(s)	135, 588, 679, 780, 784
BspACI	CCGC	2 cut(s)	128, 169
BspANI	GGCC	2 cut(s)	303, 314
BspCNI	CTCAG	1 cut(s)	64
BspDI	ATCGAT	3 cut(s)	779, 783, 787
BspHI	TCATGA	1 cut(s)	615
BspLI	GGNNCC	1 cut(s)	106
BspMAI	CTGCAG	1 cut(s)	520
BspOI	GCTAGC	1 cut(s)	747
BspPI	GGATC	2 cut(s)	596, 687
BspQI	GCTCTTC	1 cut(s)	83
BspT104I	TTCGAA	1 cut(s)	542
BspTNI	GGTCTC	1 cut(s)	374
BsrFI	RCCGGY	2 cut(s)	146, 731
BssAI	RCCGGY	2 cut(s)	146, 731
BssECI	CCNNGG	5 cut(s)	43, 63, 304, 364, 507
BssMI	GATC	5 cut(s)	135, 588, 679, 780, 784
Bst4CI	ACNGT	1 cut(s)	433
Bst6I	CTCTTC	2 cut(s)	83, 354
BstBAI	YACGTR	1 cut(s)	100
BstBI	TTCGAA	1 cut(s)	542
BstC8I	GCNNGC	3 cut(s)	179, 741, 745
BstDEI	CTNAG	2 cut(s)	52, 72
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	2 cut(s)	59, 276
BstKTI	GATC	5 cut(s)	138, 591, 682, 783, 787
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	5 cut(s)	135, 588, 679, 780, 784
BstMCI	CGRYCG	3 cut(s)	732, 783, 787
BstMWI	GCNNNNNNNGC	2 cut(s)	512, 518
BstNSI	RCATGY	1 cut(s)	154
BstSCI	CCNGG	2 cut(s)	63, 85
BstSFI	CTRYAG	1 cut(s)	516
BstV1I	GCAGC	3 cut(s)	499, 502, 530
BstV2I	GAAGAC	1 cut(s)	259
BstX2I	RGATCY	1 cut(s)	679
BstYI	RGATCY	1 cut(s)	679
Bsu15I	ATCGAT	3 cut(s)	779, 783, 787
BsuI	GTATCC	1 cut(s)	297
BsuRI	GGCC	2 cut(s)	303, 314
BsuTUI	ATCGAT	3 cut(s)	779, 783, 787
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	2 cut(s)	59, 276
BtsIMutI	CAGTG	1 cut(s)	381
Cac8I	GCNNGC	3 cut(s)	179, 741, 745
CciI	TCATGA	1 cut(s)	615
Cfr10I	RCCGGY	2 cut(s)	146, 731
ClaI	ATCGAT	3 cut(s)	779, 783, 787
Csp6I	GTAC	1 cut(s)	709
CspAI	ACCGGT	1 cut(s)	731
CviAII	CATG	7 cut(s)	151, 191, 310, 470, 585, 616, 674
CviQI	GTAC	1 cut(s)	709
DdeI	CTNAG	2 cut(s)	52, 72
DpnI	GATC	5 cut(s)	137, 590, 681, 782, 786
DpnII	GATC	5 cut(s)	135, 588, 679, 780, 784
EaeI	YGGCCR	1 cut(s)	301
Eam1104I	CTCTTC	2 cut(s)	83, 354
EarI	CTCTTC	2 cut(s)	83, 354
Ecl136II	GAGCTC	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	374
Eco32I	GATATC	1 cut(s)	457
Eco53kI	GAGCTC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	405
Eco72I	CACGTG	1 cut(s)	100
Eco88I	CYCGRG	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	76
EcoRV	GATATC	1 cut(s)	457
EcoT38I	GRGCYC	1 cut(s)	78
FaeI	CATG	7 cut(s)	154, 194, 313, 473, 588, 619, 677
FatI	CATG	7 cut(s)	150, 190, 309, 469, 584, 615, 673
Fnu4HI	GCNGC	4 cut(s)	129, 513, 516, 519
FokI	GGATG	2 cut(s)	46, 263
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	4 cut(s)	129, 513, 516, 519
FspBI	CTAG	2 cut(s)	581, 744
GluI	GCNGC	4 cut(s)	129, 513, 516, 519
HaeIII	GGCC	2 cut(s)	303, 314
HapII	CCGG	6 cut(s)	65, 87, 123, 147, 732, 799
Hin1II	CATG	7 cut(s)	154, 194, 313, 473, 588, 619, 677
HinfI	GANTC	7 cut(s)	48, 90, 477, 533, 550, 599, 691
HpaII	CCGG	6 cut(s)	65, 87, 123, 147, 732, 799
HphI	GGTGA	3 cut(s)	198, 262, 464
Hpy188I	TCNGA	3 cut(s)	15, 47, 690
Hpy188III	TCNNGA	4 cut(s)	220, 437, 616, 698
HpyAV	CCTTC	2 cut(s)	253, 325
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4IV	ACGT	3 cut(s)	99, 621, 711
HpyCH4V	TGCA	1 cut(s)	518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	512, 518
HpyF3I	CTNAG	2 cut(s)	52, 72
HpySE526I	ACGT	3 cut(s)	99, 621, 711
Hsp92II	CATG	7 cut(s)	154, 194, 313, 473, 588, 619, 677
Kzo9I	GATC	5 cut(s)	135, 588, 679, 780, 784
LguI	GCTCTTC	1 cut(s)	83
LmnI	GCTCC	2 cut(s)	752, 768
LpnPI	CCDG	9 cut(s)	78, 100, 136, 160, 163, 187, 552, 745, 747
Lsp1109I	GCAGC	3 cut(s)	499, 502, 530
MaeI	CTAG	2 cut(s)	581, 744
MaeII	ACGT	3 cut(s)	99, 621, 711
MaeIII	GTNAC	1 cut(s)	622
MalI	GATC	5 cut(s)	137, 590, 681, 782, 786
MboI	GATC	5 cut(s)	135, 588, 679, 780, 784
MboII	GAAGA	9 cut(s)	26, 29, 70, 259, 341, 403, 630, 633, 686
MflI	RGATCY	1 cut(s)	679
MhlI	GDGCHC	1 cut(s)	78
MlsI	TGGCCA	1 cut(s)	303
MluCI	AATT	7 cut(s)	158, 202, 210, 576, 654, 660, 701
MluNI	TGGCCA	1 cut(s)	303
MlyI	GAGTC	1 cut(s)	527
MmeI	TCCRAC	1 cut(s)	454
MnlI	CCTC	7 cut(s)	53, 268, 340, 350, 374, 383, 517
Mox20I	TGGCCA	1 cut(s)	303
MroXI	GAANNNNTTC	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	303
MseI	TTAA	5 cut(s)	155, 161, 227, 555, 808
Msp20I	TGGCCA	1 cut(s)	303
MspI	CCGG	6 cut(s)	65, 87, 123, 147, 732, 799
MspR9I	CCNGG	2 cut(s)	65, 87
MwoI	GCNNNNNNNGC	2 cut(s)	512, 518
NciI	CCSGG	2 cut(s)	65, 87
NdeII	GATC	5 cut(s)	135, 588, 679, 780, 784
NheI	GCTAGC	1 cut(s)	743
NlaIII	CATG	7 cut(s)	154, 194, 313, 473, 588, 619, 677
NlaIV	GGNNCC	1 cut(s)	106
NmeAIII	GCCGAG	1 cut(s)	488
NspI	RCATGY	1 cut(s)	154
NspV	TTCGAA	1 cut(s)	542
PagI	TCATGA	1 cut(s)	615
PciSI	GCTCTTC	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	6 cut(s)	48, 90, 477, 550, 599, 691
PflMI	CCANNNNNTGG	1 cut(s)	310
PfoI	TCCNGGA	1 cut(s)	85
PinAI	ACCGGT	1 cut(s)	731
PkrI	GCNGC	4 cut(s)	130, 514, 517, 520
Ple19I	CGATCG	2 cut(s)	783, 787
PleI	GAGTC	1 cut(s)	527
PmaCI	CACGTG	1 cut(s)	100
PmlI	CACGTG	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	527
Ppu21I	YACGTR	1 cut(s)	100
Psp124BI	GAGCTC	1 cut(s)	78
PspCI	CACGTG	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	106
PstI	CTGCAG	1 cut(s)	520
PsuI	RGATCY	1 cut(s)	679
PvuI	CGATCG	2 cut(s)	783, 787
RsaI	GTAC	1 cut(s)	710
RsaNI	GTAC	1 cut(s)	709
SacI	GAGCTC	1 cut(s)	78
SapI	GCTCTTC	1 cut(s)	83
SaqAI	TTAA	5 cut(s)	155, 161, 227, 555, 808
SatI	GCNGC	4 cut(s)	129, 513, 516, 519
Sau3AI	GATC	5 cut(s)	135, 588, 679, 780, 784
SchI	GAGTC	1 cut(s)	527
ScrFI	CCNGG	2 cut(s)	65, 87
SduI	GDGCHC	1 cut(s)	78
SfcI	CTRYAG	1 cut(s)	516
SfuI	TTCGAA	1 cut(s)	542
Sse9I	AATT	7 cut(s)	158, 202, 210, 576, 654, 660, 701
SsiI	CCGC	2 cut(s)	128, 169
SspI	AATATT	2 cut(s)	10, 21
SspMI	CTAG	2 cut(s)	581, 744
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	63, 85
TaaI	ACNGT	1 cut(s)	433
TaiI	ACGT	3 cut(s)	102, 624, 714
TaqII	GACCGA	1 cut(s)	356
TasI	AATT	7 cut(s)	158, 202, 210, 576, 654, 660, 701
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	6 cut(s)	48, 90, 477, 550, 599, 691
Tru1I	TTAA	5 cut(s)	155, 161, 227, 555, 808
Tru9I	TTAA	5 cut(s)	155, 161, 227, 555, 808
TscAI	CASTG	1 cut(s)	388
TseI	GCWGC	3 cut(s)	512, 515, 518
TspDTI	ATGAA	2 cut(s)	48, 632
TspRI	CASTG	1 cut(s)	388
Van91I	CCANNNNNTGG	1 cut(s)	310
XapI	RAATTY	2 cut(s)	654, 701
XceI	RCATGY	1 cut(s)	154
XcmI	CCANNNNNNNNNTGG	2 cut(s)	181, 582
XmnI	GAANNNNTTC	1 cut(s)	20
XspI	CTAG	2 cut(s)	581, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.