Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001385

Physical Location & Seq

Genomic Coordinates Reverse (-)

37493764 .. 37494781

Gene Structure 1018 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024618

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGACGCGTTCCACAATATTGGTAGAATTTGAAAACGATCTTGGCATTCTCAAATTGACCAATGACACCAGTAGATTAATGGTTAGTGCCTTTTACACTTCACCAATTCGATTCAAAAACTCCACAAATGGTAAGGCCTTCTCTTTCTCGACCTCATTTGCTTTCACTAAAGTTCCTCAGTATCCAAAGCTCGGCGACCATGGCTTTGCTTTCACAATAGCACCATCTAAAGATCTCAATTCTCTGCCTAGCCAATATCTAGGTCTCTTCAATGGCAGTGATATTGGCAACTCCTCCACACACATCATTGCAATCGAATTCGACAAAGTTCAAGACTTTGAATTTGGAGATATCAATGACAGTCATGTAGGGATCAATCTCAACAGCTTGAAATCAAACGCCTCAACTGAAGCTGCATATTACACAGATGCTTCTCTTCCAAACCCCAAACCTAAAACCCCACTTATTTCTTTCCATGTAGATCTCTCACCGATTTTCGAAGAGTTTATGTATGTTGGGTTCTCAGCTTCAACAGGTCTACTTGCTAGCTCCTACTACATTATGGGCTGGAGCTTCAAGATTTATGGACAGCCCCAACCCTTTCATCTGGCCTCTCTTCCTAAAATTCCAATACCCAAAAATAATCACACAGCTTTGAAAATCGGAGTCTCAGTCGCAGCCATTACTCTCGCTCCATCTGCAATCTCCATAACCATCTACGTCTTCATCAGGAAGCTCAAGAACGCCGAGCCAATCGAGTCATGGGAGCTCGAGCTCGGCCCACACAGATACTCCTACCAAGAACTGAAAAAAGCCACAAAAGGGTTCAGAGGAAAAGAGCTCATCGGCGAAGGCGGGTTCGGCCAAGTGTTCAAAGGAACACTCCCTAATTCCAAAACCCTAGTCGCCGTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

306

Amino Acids

33.56

Weight (kDa)

8.97

Isoelectric Point (pI)

25.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	14 - 139	4.4e-35	Legume lectin domain
Lectin_legB	PF00139	148 - 204	3.9e-13	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55550
fragaria_vesca	FvH4_6g13180 FvH4_7g22900
malus_domestica	MD01G1137300.v1.1 MD01G1137400.v1.1 MD01G1137500.v1.1 MD01G1137600.v1.1 MD01G1137700.v1.1 MD04G1133700.v1.1 MD04G1133800.v1.1 MD12G1147700.v1.1
prunus_persica	Prupe.2G238700_v2.0.a1
pyrus_communis	pycom01g15830 pycom01g15860 pycom01g15870 pycom01g15880 pycom04g12170 pycom12g14140
rosa_chinensis	RchiOBHm_Chr1g0368061 RchiOBHm_Chr3g0465661 RchiOBHm_Chr3g0465671 RchiOBHm_Chr3g0465791 RchiOBHm_Chr4g0404141
rosa_laevigata	RLG00000024618 RLG00000024629 RLG00000024630 RLG00000027242
rosa_multiflora	Rmu_sc0000550.1_g000019 Rmu_sc0005103.1_g000004 Rmu_sc0007705.1_g000006 Rmu_sc0007705.1_g000016 Rmu_sc0007705.1_g000021 Rmu_sc0013273.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288890 Rroxscaffold_6G00414940
rosa_rugosa	Rorug01G0338700 Rorug03G0078100 Rorug03G0078200
rosa_samantha	Rh1AG345700 Rh1BG308000 Rh1CG323600 Rh1DG340100 Rh3BG143600 Rh3CG144600 Rh3CG144700 Rh3CG144800 Rh3CG145700 Rh3DG144900 Rh4AG123100 Rh4BG116200
rosa_wichuraiana	Rw1G030770 Rw3G011660 Rw3G011700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	538
AccII	CGCG	1 cut(s)	7
AciI	CCGC	1 cut(s)	855
AclWI	GGATC	1 cut(s)	380
AcoI	YGGCCR	1 cut(s)	862
AcsI	RAATTY	4 cut(s)	26, 317, 341, 624
AcuI	CTGAAG	1 cut(s)	429
AfiI	CCNNNNNNNGG	2 cut(s)	191, 822
AflIII	ACRYGT	1 cut(s)	5
AjuI	GAANNNNNNNTTGG	2 cut(s)	24, 56
Alw21I	GWGCWC	3 cut(s)	771, 777, 843
Alw26I	GTCTC	2 cut(s)	269, 673
AlwI	GGATC	1 cut(s)	380
Ama87I	CYCGRG	1 cut(s)	770
AoxI	GGCC	4 cut(s)	135, 609, 778, 862
ApeKI	GCWGC	2 cut(s)	413, 677
ApoI	RAATTY	4 cut(s)	26, 317, 341, 624
ArsI	GACNNNNNNTTYG	5 cut(s)	188, 220, 326, 358, 888
AseI	ATTAAT	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	779
AsuHPI	GGTGA	2 cut(s)	93, 480
AsuII	TTCGAA	1 cut(s)	498
AsuNHI	GCTAGC	1 cut(s)	545
AvaI	CYCGRG	1 cut(s)	770
BanII	GRGCYC	3 cut(s)	771, 777, 843
BbsI	GAAGAC	1 cut(s)	715
Bbv12I	GWGCWC	3 cut(s)	771, 777, 843
BbvI	GCAGC	2 cut(s)	400, 689
BccI	CCATC	3 cut(s)	232, 703, 722
BceAI	ACGGC	1 cut(s)	893
BciVI	GTATCC	1 cut(s)	192
BcoDI	GTCTC	2 cut(s)	269, 673
BfaI	CTAG	4 cut(s)	249, 260, 546, 902
BfuI	GTATCC	1 cut(s)	192
BglII	AGATCT	2 cut(s)	232, 481
BisI	GCNGC	2 cut(s)	414, 678
BlsI	GCNGC	2 cut(s)	415, 679
BmeT110I	CYCGRG	1 cut(s)	770
BmgT120I	GGNCC	1 cut(s)	779
BmsI	GCATC	1 cut(s)	418
BmtI	GCTAGC	1 cut(s)	549
BpiI	GAAGAC	1 cut(s)	715
BpmI	CTGGAG	1 cut(s)	589
Bpu14I	TTCGAA	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	722
BsaI	GGTCTC	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	199
BsaXI	ACNNNNNCTCC	6 cut(s)	657, 676, 687, 706, 776, 806
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 822
Bse1I	ACTGG	1 cut(s)	69
Bse3DI	GCAATG	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	199
BseLI	CCNNNNNNNGG	2 cut(s)	191, 822
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	3 cut(s)	191, 537, 684
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	1 cut(s)	283
BseXI	GCAGC	2 cut(s)	400, 689
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	4 cut(s)	137, 611, 780, 864
BsiHKAI	GWGCWC	3 cut(s)	771, 777, 843
BsiHKCI	CYCGRG	1 cut(s)	770
BslI	CCNNNNNNNGG	2 cut(s)	191, 822
BsmAI	GTCTC	2 cut(s)	269, 673
BsmI	GAATGC	1 cut(s)	45
BsnI	GGCC	4 cut(s)	137, 611, 780, 864
Bso31I	GGTCTC	1 cut(s)	269
BsoBI	CYCGRG	1 cut(s)	770
Bsp119I	TTCGAA	1 cut(s)	498
Bsp1286I	GDGCHC	3 cut(s)	771, 777, 843
Bsp143I	GATC	4 cut(s)	37, 232, 372, 481
Bsp19I	CCATGG	1 cut(s)	199
BspACI	CCGC	1 cut(s)	855
BspANI	GGCC	4 cut(s)	137, 611, 780, 864
BspCNI	CTCAG	3 cut(s)	190, 536, 683
BspFNI	CGCG	1 cut(s)	7
BspOI	GCTAGC	1 cut(s)	549
BspPI	GGATC	1 cut(s)	380
BspT104I	TTCGAA	1 cut(s)	498
BspTNI	GGTCTC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	306
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	4 cut(s)	37, 232, 372, 481
BssT1I	CCWWGG	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	362
Bst6I	CTCTTC	4 cut(s)	272, 441, 495, 621
BstBI	TTCGAA	1 cut(s)	498
BstC8I	GCNNGC	1 cut(s)	547
BstDEI	CTNAG	3 cut(s)	177, 523, 670
BstDSI	CCRYGG	1 cut(s)	199
BstFNI	CGCG	1 cut(s)	7
BstKTI	GATC	4 cut(s)	40, 235, 375, 484
BstMAI	GTCTC	2 cut(s)	269, 673
BstMBI	GATC	4 cut(s)	37, 232, 372, 481
BstMWI	GCNNNNNNNGC	3 cut(s)	201, 698, 861
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	2 cut(s)	400, 689
BstV2I	GAAGAC	1 cut(s)	715
BstX2I	RGATCY	2 cut(s)	232, 481
BstXI	CCANNNNNNTGG	1 cut(s)	19
BstYI	RGATCY	2 cut(s)	232, 481
BsuI	GTATCC	1 cut(s)	192
BsuRI	GGCC	4 cut(s)	137, 611, 780, 864
BtgI	CCRYGG	1 cut(s)	199
BtsI	GCAGTG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	283
Cac8I	GCNNGC	1 cut(s)	547
Cfr13I	GGNCC	1 cut(s)	779
CseI	GACGC	1 cut(s)	13
CviAII	CATG	4 cut(s)	200, 365, 476, 762
DdeI	CTNAG	3 cut(s)	177, 523, 670
DpnI	GATC	4 cut(s)	39, 234, 374, 483
DpnII	GATC	4 cut(s)	37, 232, 372, 481
EaeI	YGGCCR	1 cut(s)	862
Eam1104I	CTCTTC	4 cut(s)	272, 441, 495, 621
EarI	CTCTTC	4 cut(s)	272, 441, 495, 621
Ecl136II	GAGCTC	3 cut(s)	769, 775, 841
Eco130I	CCWWGG	1 cut(s)	199
Eco147I	AGGCCT	1 cut(s)	137
Eco24I	GRGCYC	3 cut(s)	771, 777, 843
Eco31I	GGTCTC	1 cut(s)	269
Eco32I	GATATC	1 cut(s)	352
Eco53kI	GAGCTC	3 cut(s)	769, 775, 841
Eco57I	CTGAAG	1 cut(s)	429
Eco88I	CYCGRG	1 cut(s)	770
EcoICRI	GAGCTC	3 cut(s)	769, 775, 841
EcoRI	GAATTC	1 cut(s)	317
EcoRV	GATATC	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	199
EcoT38I	GRGCYC	3 cut(s)	771, 777, 843
ErhI	CCWWGG	1 cut(s)	199
FaeI	CATG	4 cut(s)	203, 368, 479, 765
FatI	CATG	4 cut(s)	199, 364, 475, 761
FauI	CCCGC	1 cut(s)	848
FblI	GTMKAC	1 cut(s)	538
Fnu4HI	GCNGC	2 cut(s)	414, 678
FriOI	GRGCYC	3 cut(s)	771, 777, 843
Fsp4HI	GCNGC	2 cut(s)	414, 678
FspBI	CTAG	4 cut(s)	249, 260, 546, 902
GluI	GCNGC	2 cut(s)	414, 678
GsuI	CTGGAG	1 cut(s)	589
HaeIII	GGCC	4 cut(s)	137, 611, 780, 864
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	4 cut(s)	203, 368, 479, 765
HinfI	GANTC	3 cut(s)	111, 666, 758
HphI	GGTGA	2 cut(s)	93, 480
Hpy166II	GTNNAC	1 cut(s)	539
Hpy188I	TCNGA	2 cut(s)	665, 830
Hpy188III	TCNNGA	5 cut(s)	148, 332, 577, 730, 739
Hpy8I	GTNNAC	1 cut(s)	539
HpyAV	CCTTC	2 cut(s)	148, 845
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4IV	ACGT	1 cut(s)	720
HpyCH4V	TGCA	3 cut(s)	311, 416, 701
HpyF10VI	GCNNNNNNNGC	3 cut(s)	201, 698, 861
HpyF3I	CTNAG	3 cut(s)	177, 523, 670
HpySE526I	ACGT	1 cut(s)	720
Hsp92II	CATG	4 cut(s)	203, 368, 479, 765
Kzo9I	GATC	4 cut(s)	37, 232, 372, 481
LmnI	GCTCC	4 cut(s)	554, 570, 697, 766
LpnPI	CCDG	5 cut(s)	82, 519, 553, 593, 715
Lsp1109I	GCAGC	2 cut(s)	400, 689
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	4 cut(s)	249, 260, 546, 902
MaeII	ACGT	1 cut(s)	720
MalI	GATC	4 cut(s)	39, 234, 374, 483
MboI	GATC	4 cut(s)	37, 232, 372, 481
MboII	GAAGA	5 cut(s)	259, 428, 512, 608, 715
MflI	RGATCY	2 cut(s)	232, 481
MhlI	GDGCHC	3 cut(s)	771, 777, 843
MluCI	AATT	8 cut(s)	26, 53, 105, 238, 317, 341, 624, 889
MluI	ACGCGT	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	675, 767
MnlI	CCTC	6 cut(s)	163, 186, 304, 412, 622, 824
MseI	TTAA	1 cut(s)	77
Mva1269I	GAATGC	1 cut(s)	45
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	3 cut(s)	201, 698, 861
NcoI	CCATGG	1 cut(s)	199
NdeII	GATC	4 cut(s)	37, 232, 372, 481
NheI	GCTAGC	1 cut(s)	545
NlaIII	CATG	4 cut(s)	203, 368, 479, 765
NmeAIII	GCCGAG	3 cut(s)	171, 756, 772
NspV	TTCGAA	1 cut(s)	498
PaeR7I	CTCGAG	1 cut(s)	770
PceI	AGGCCT	1 cut(s)	137
PctI	GAATGC	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	111
PkrI	GCNGC	2 cut(s)	415, 679
PleI	GAGTC	2 cut(s)	674, 766
PpsI	GAGTC	2 cut(s)	674, 766
PshBI	ATTAAT	1 cut(s)	77
Psp124BI	GAGCTC	3 cut(s)	771, 777, 843
PspPI	GGNCC	1 cut(s)	779
PspXI	VCTCGAGB	1 cut(s)	770
PsrI	GAACNNNNNNTAC	2 cut(s)	503, 535
PsuI	RGATCY	2 cut(s)	232, 481
SacI	GAGCTC	3 cut(s)	771, 777, 843
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	2 cut(s)	414, 678
Sau3AI	GATC	4 cut(s)	37, 232, 372, 481
Sau96I	GGNCC	1 cut(s)	779
SchI	GAGTC	2 cut(s)	675, 767
SduI	GDGCHC	3 cut(s)	771, 777, 843
SfaNI	GCATC	1 cut(s)	418
Sfr274I	CTCGAG	1 cut(s)	770
SfuI	TTCGAA	1 cut(s)	498
SlaI	CTCGAG	1 cut(s)	770
SmlI	CTYRAG	2 cut(s)	737, 770
SmoI	CTYRAG	2 cut(s)	737, 770
Sse9I	AATT	8 cut(s)	26, 53, 105, 238, 317, 341, 624, 889
SseBI	AGGCCT	1 cut(s)	137
SsiI	CCGC	1 cut(s)	855
SspI	AATATT	1 cut(s)	18
SspMI	CTAG	4 cut(s)	249, 260, 546, 902
SstI	GAGCTC	3 cut(s)	771, 777, 843
StuI	AGGCCT	1 cut(s)	137
StyI	CCWWGG	1 cut(s)	199
TaaI	ACNGT	1 cut(s)	362
TaiI	ACGT	1 cut(s)	723
TaqI	TCGA	7 cut(s)	109, 149, 315, 321, 498, 756, 771
TasI	AATT	8 cut(s)	26, 53, 105, 238, 317, 341, 624, 889
TfiI	GAWTC	1 cut(s)	111
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TscAI	CASTG	1 cut(s)	283
TseI	GCWGC	2 cut(s)	413, 677
TspDTI	ATGAA	2 cut(s)	593, 715
TspRI	CASTG	1 cut(s)	283
VspI	ATTAAT	1 cut(s)	77
XapI	RAATTY	4 cut(s)	26, 317, 341, 624
XcmI	CCANNNNNNNNNTGG	2 cut(s)	76, 759
XhoI	CTCGAG	1 cut(s)	770
XmiI	GTMKAC	1 cut(s)	538
XspI	CTAG	4 cut(s)	249, 260, 546, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.