Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001385

Physical Location & Seq

Genomic Coordinates Forward (+)

6108888 .. 6110294

Gene Structure 1407 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0078100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGCACTTGAGAAGGGTTCAGATCTAGCAGAACTGACACAGTCCTGCAAAAATATTGAAGAAAATGTGGTGGAACAAATCCTATCAACTCTGCCTCCCAAATCTCTTATGCGATTCAAGTGCATCTCTAAATGGTGGTACAATCTCATCACCAGTCCCAGTAATGGTGGACTTAGCACCAATCTTTCTAGTGTGGAAGACCTCACTATTCCTACAAGGGTAGTCGAATCACTTCGTATTATAGGCCATTGTGATGGGATTGTTTGTCTAGCTTTAATCGATTATCATCAGAGGCTAGCTAAATCTAGTGAAGTGTGTCTTTGGAATCCTGCAATTCATCAATTTAAATTTCTTCCGGAGGAGCCATTCCTTCAAGATTGGTCCAAGTCTAAAGATTACAAAGTTATTGACATTGGATTTTCTGATTCCAAATTTTATGGTGATCCGGAATATTATGGTGGACATGTGATTGTTTATCCCCCAAAAGCAGTAGTATACACCATGCGAACTGATTCTTGGAGAGAGATCAAGACTTTTTCTTTGGAAAGGGAAACTAGTTACCTTTGGCCTGATACGTTTCAGCTATACTTCAAGGGAATGTGTTATTGGTCGGGATATGAGCAACAAAAGGAATTCTTCTGTGTCTACGACACTGACAAAGAAGAGGACGAACGCATTGGGCAATCGATCATTTTGTTTGATACGAGCGATGAGGTATTTCATGATATTCTGTTACCCTTGCATTTTGTGGATGGGCACAAAGCTACAATGCGGGTGGGGGATGATTGTGGCCATGCCAAAGGTGCTTGGACAAAACAATTAACTTTTGAATATGTGGAGTACTTTCCTTACAGGTTACCACTAAAGATATTGGCATTTTGGAAGAGCAACGAAATTCTTGGGGTTGGAGAAAATGGATATATTGTCTACTATAACCTCATCAACAAAAATGTCAATTATCTTCCGATTCAAAATATTCCAGATTATTTTCCACCTACTAGACACACTTTTTATCCTTTTTGTGGTATTGCTTATGTGAATAGTGTCGTTCCAATCATGAATAATGGGAGGCATCACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

360

Amino Acids

41.82

Weight (kDa)

5.49

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	77 - 251	3.2e-12	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55550
fragaria_vesca	FvH4_6g13180 FvH4_7g22900
malus_domestica	MD01G1137300.v1.1 MD01G1137400.v1.1 MD01G1137500.v1.1 MD01G1137600.v1.1 MD01G1137700.v1.1 MD04G1133700.v1.1 MD04G1133800.v1.1 MD12G1147700.v1.1
prunus_persica	Prupe.2G238700_v2.0.a1
pyrus_communis	pycom01g15830 pycom01g15860 pycom01g15870 pycom01g15880 pycom04g12170 pycom12g14140
rosa_chinensis	RchiOBHm_Chr1g0368061 RchiOBHm_Chr3g0465661 RchiOBHm_Chr3g0465671 RchiOBHm_Chr3g0465791 RchiOBHm_Chr4g0404141
rosa_laevigata	RLG00000024618 RLG00000024629 RLG00000024630 RLG00000027242
rosa_multiflora	Rmu_sc0000550.1_g000019 Rmu_sc0005103.1_g000004 Rmu_sc0007705.1_g000006 Rmu_sc0007705.1_g000016 Rmu_sc0007705.1_g000021 Rmu_sc0013273.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288890 Rroxscaffold_6G00414940
rosa_rugosa	Rorug01G0338700 Rorug03G0078100 Rorug03G0078200
rosa_samantha	Rh1AG345700 Rh1BG308000 Rh1CG323600 Rh1DG340100 Rh3BG143600 Rh3CG144600 Rh3CG144700 Rh3CG144800 Rh3CG145700 Rh3DG144900 Rh4AG123100 Rh4BG116200
rosa_wichuraiana	Rw1G030770 Rw3G011660 Rw3G011700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	495, 645, 927
AccIII	TCCGGA	2 cut(s)	355, 445
AciI	CCGC	1 cut(s)	772
AclWI	GGATC	1 cut(s)	437
AcoI	YGGCCR	1 cut(s)	790
AcsI	RAATTY	4 cut(s)	347, 431, 632, 894
AfaI	GTAC	2 cut(s)	140, 842
AfiI	CCNNNNNNNGG	2 cut(s)	164, 1022
AflIII	ACRYGT	1 cut(s)	463
AgsI	TTSAA	6 cut(s)	59, 118, 374, 592, 830, 971
AhlI	ACTAGT	1 cut(s)	554
AjuI	GAANNNNNNNTTGG	4 cut(s)	499, 531, 589, 621
AluBI	AGCT	4 cut(s)	272, 299, 583, 764
AluI	AGCT	4 cut(s)	272, 299, 583, 764
AlwI	GGATC	1 cut(s)	437
Aor13HI	TCCGGA	2 cut(s)	355, 445
AoxI	GGCC	3 cut(s)	244, 566, 790
ApoI	RAATTY	4 cut(s)	347, 431, 632, 894
ArsI	GACNNNNNNTTYG	2 cut(s)	523, 555
Asp700I	GAANNNNTTC	2 cut(s)	231, 511
AspS9I	GGNCC	1 cut(s)	381
AsuHPI	GGTGA	2 cut(s)	142, 452
AsuNHI	GCTAGC	1 cut(s)	295
AvaII	GGWCC	1 cut(s)	381
BaeGI	GKGCMC	1 cut(s)	759
BalI	TGGCCA	1 cut(s)	792
BbsI	GAAGAC	1 cut(s)	204
BccI	CCATC	2 cut(s)	248, 746
BcgI	CGANNNNNNTGC	2 cut(s)	102, 136
BcuI	ACTAGT	1 cut(s)	554
BfaI	CTAG	7 cut(s)	26, 189, 269, 296, 306, 555, 999
BglII	AGATCT	1 cut(s)	22
BmcAI	AGTACT	1 cut(s)	842
Bme18I	GGWCC	1 cut(s)	381
BmgT120I	GGNCC	1 cut(s)	381
BmiI	GGNNCC	1 cut(s)	363
BmrI	ACTGGG	1 cut(s)	153
BmsI	GCATC	1 cut(s)	132
BmtI	GCTAGC	1 cut(s)	299
BmuI	ACTGGG	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	29
Bsa29I	ATCGAT	2 cut(s)	279, 686
BsaBI	GATNNNNATC	1 cut(s)	285
BsaWI	WCCGGW	2 cut(s)	355, 445
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 1022
Bse1I	ACTGG	2 cut(s)	153, 159
Bse8I	GATNNNNATC	1 cut(s)	285
BseAI	TCCGGA	2 cut(s)	355, 445
BseCI	ATCGAT	2 cut(s)	279, 686
BseGI	GGATG	2 cut(s)	757, 787
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	2 cut(s)	164, 1022
BseNI	ACTGG	2 cut(s)	153, 159
BseRI	GAGGAG	1 cut(s)	374
BseSI	GKGCMC	1 cut(s)	759
BshFI	GGCC	3 cut(s)	246, 568, 792
BshVI	ATCGAT	2 cut(s)	279, 686
BsiSI	CCGG	2 cut(s)	356, 446
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	2 cut(s)	164, 1022
BsmFI	GGGAC	1 cut(s)	141
BsnI	GGCC	3 cut(s)	246, 568, 792
Bsp1286I	GDGCHC	1 cut(s)	759
Bsp13I	TCCGGA	2 cut(s)	355, 445
Bsp143I	GATC	4 cut(s)	22, 442, 525, 687
BspACI	CCGC	1 cut(s)	772
BspANI	GGCC	3 cut(s)	246, 568, 792
BspDI	ATCGAT	2 cut(s)	279, 686
BspEI	TCCGGA	2 cut(s)	355, 445
BspHI	TCATGA	2 cut(s)	721, 1056
BspLI	GGNNCC	1 cut(s)	363
BspOI	GCTAGC	1 cut(s)	299
BspPI	GGATC	1 cut(s)	437
BspQI	GCTCTTC	1 cut(s)	878
BsrI	ACTGG	2 cut(s)	153, 159
BssMI	GATC	4 cut(s)	22, 442, 525, 687
BssNAI	GTATAC	1 cut(s)	496
Bst1107I	GTATAC	1 cut(s)	496
Bst4CI	ACNGT	1 cut(s)	42
Bst6I	CTCTTC	2 cut(s)	657, 878
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	173
BstEII	GGTNACC	1 cut(s)	855
BstF5I	GGATG	2 cut(s)	757, 787
BstKTI	GATC	4 cut(s)	25, 445, 528, 690
BstMBI	GATC	4 cut(s)	22, 442, 525, 687
BstMWI	GCNNNNNNNGC	1 cut(s)	803
BstNSI	RCATGY	1 cut(s)	467
BstPI	GGTNACC	1 cut(s)	855
BstSLI	GKGCMC	1 cut(s)	759
BstV2I	GAAGAC	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	22
BstXI	CCANNNNNNTGG	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	22
BstZ17I	GTATAC	1 cut(s)	496
Bsu15I	ATCGAT	2 cut(s)	279, 686
BsuRI	GGCC	3 cut(s)	246, 568, 792
BsuTUI	ATCGAT	2 cut(s)	279, 686
BtgZI	GCGATG	1 cut(s)	723
BtsCI	GGATG	2 cut(s)	757, 787
BtsIMutI	CAGTG	1 cut(s)	651
Cac8I	GCNNGC	1 cut(s)	297
CciI	TCATGA	2 cut(s)	721, 1056
Cfr13I	GGNCC	1 cut(s)	381
ClaI	ATCGAT	2 cut(s)	279, 686
Csp6I	GTAC	2 cut(s)	139, 841
CspCI	CAANNNNNGTGG	2 cut(s)	756, 791
CviAII	CATG	5 cut(s)	464, 502, 722, 794, 1057
CviJI	RGCY	9 cut(s)	246, 272, 295, 299, 364, 568, 583, 764, 792
CviKI_1	RGCY	9 cut(s)	246, 272, 295, 299, 364, 568, 583, 764, 792
CviQI	GTAC	2 cut(s)	139, 841
DdeI	CTNAG	1 cut(s)	173
DpnI	GATC	4 cut(s)	24, 444, 527, 689
DpnII	GATC	4 cut(s)	22, 442, 525, 687
DraI	TTTAAA	1 cut(s)	346
EaeI	YGGCCR	1 cut(s)	790
Eam1104I	CTCTTC	2 cut(s)	657, 878
EarI	CTCTTC	2 cut(s)	657, 878
Eco47I	GGWCC	1 cut(s)	381
Eco91I	GGTNACC	1 cut(s)	855
EcoO65I	GGTNACC	1 cut(s)	855
EcoRI	GAATTC	1 cut(s)	632
FaeI	CATG	5 cut(s)	467, 505, 725, 797, 1060
FalI	AAGNNNNNCTT	4 cut(s)	303, 335, 620, 652
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	5 cut(s)	463, 501, 721, 793, 1056
FauI	CCCGC	1 cut(s)	765
FblI	GTMKAC	3 cut(s)	495, 645, 927
FokI	GGATG	2 cut(s)	764, 794
FspBI	CTAG	7 cut(s)	26, 189, 269, 296, 306, 555, 999
HaeIII	GGCC	3 cut(s)	246, 568, 792
HapII	CCGG	2 cut(s)	356, 446
Hin1II	CATG	5 cut(s)	467, 505, 725, 797, 1060
HinfI	GANTC	6 cut(s)	114, 227, 325, 425, 512, 967
HpaII	CCGG	2 cut(s)	356, 446
HphI	GGTGA	2 cut(s)	142, 452
Hpy166II	GTNNAC	5 cut(s)	170, 461, 496, 646, 928
Hpy188I	TCNGA	4 cut(s)	22, 291, 424, 966
Hpy188III	TCNNGA	8 cut(s)	356, 374, 446, 529, 612, 722, 980, 1057
Hpy8I	GTNNAC	5 cut(s)	170, 461, 496, 646, 928
HpyAV	CCTTC	2 cut(s)	7, 380
HpyCH4III	ACNGT	1 cut(s)	42
HpyCH4IV	ACGT	1 cut(s)	575
HpyCH4V	TGCA	4 cut(s)	48, 123, 332, 742
HpyF10VI	GCNNNNNNNGC	1 cut(s)	803
HpyF3I	CTNAG	1 cut(s)	173
HpySE526I	ACGT	1 cut(s)	575
Hsp92II	CATG	5 cut(s)	467, 505, 725, 797, 1060
Kpn2I	TCCGGA	2 cut(s)	355, 445
Kzo9I	GATC	4 cut(s)	22, 442, 525, 687
LguI	GCTCTTC	1 cut(s)	878
LmnI	GCTCC	1 cut(s)	361
LpnPI	CCDG	9 cut(s)	58, 166, 172, 342, 369, 459, 582, 838, 993
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	7 cut(s)	26, 189, 269, 296, 306, 555, 999
MaeII	ACGT	1 cut(s)	575
MaeIII	GTNAC	3 cut(s)	557, 732, 855
MalI	GATC	4 cut(s)	24, 444, 527, 689
MboI	GATC	4 cut(s)	22, 442, 525, 687
MboII	GAAGA	7 cut(s)	71, 209, 344, 628, 674, 895, 953
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	1 cut(s)	759
MlsI	TGGCCA	1 cut(s)	792
MluCI	AATT	8 cut(s)	333, 341, 347, 431, 632, 818, 894, 955
MluNI	TGGCCA	1 cut(s)	792
MmeI	TCCRAC	1 cut(s)	886
MnlI	CCTC	8 cut(s)	105, 212, 285, 352, 658, 706, 947, 1062
Mox20I	TGGCCA	1 cut(s)	792
MroI	TCCGGA	2 cut(s)	355, 445
MroXI	GAANNNNTTC	2 cut(s)	231, 511
MscI	TGGCCA	1 cut(s)	792
MseI	TTAA	3 cut(s)	275, 345, 821
MslI	CAYNNNNRTG	1 cut(s)	252
Msp20I	TGGCCA	1 cut(s)	792
MspI	CCGG	2 cut(s)	356, 446
MwoI	GCNNNNNNNGC	1 cut(s)	803
NdeII	GATC	4 cut(s)	22, 442, 525, 687
NheI	GCTAGC	1 cut(s)	295
NlaIII	CATG	5 cut(s)	467, 505, 725, 797, 1060
NlaIV	GGNNCC	1 cut(s)	363
NspI	RCATGY	1 cut(s)	467
PagI	TCATGA	2 cut(s)	721, 1056
PciI	ACATGT	1 cut(s)	463
PciSI	GCTCTTC	1 cut(s)	878
PdmI	GAANNNNTTC	2 cut(s)	231, 511
PfeI	GAWTC	6 cut(s)	114, 227, 325, 425, 512, 967
PflFI	GACNNNGTC	1 cut(s)	40
PscI	ACATGT	1 cut(s)	463
PspEI	GGTNACC	1 cut(s)	855
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	1 cut(s)	381
PsuI	RGATCY	1 cut(s)	22
PsyI	GACNNNGTC	1 cut(s)	40
RsaI	GTAC	2 cut(s)	140, 842
RsaNI	GTAC	2 cut(s)	139, 841
RseI	CAYNNNNRTG	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	878
SaqAI	TTAA	3 cut(s)	275, 345, 821
Sau3AI	GATC	4 cut(s)	22, 442, 525, 687
Sau96I	GGNCC	1 cut(s)	381
ScaI	AGTACT	1 cut(s)	842
SduI	GDGCHC	1 cut(s)	759
SfaNI	GCATC	1 cut(s)	132
SinI	GGWCC	1 cut(s)	381
SmiI	ATTTAAAT	1 cut(s)	346
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
SpeI	ACTAGT	1 cut(s)	554
Sse9I	AATT	8 cut(s)	333, 341, 347, 431, 632, 818, 894, 955
SsiI	CCGC	1 cut(s)	772
SspI	AATATT	3 cut(s)	55, 452, 976
SspMI	CTAG	7 cut(s)	26, 189, 269, 296, 306, 555, 999
SwaI	ATTTAAAT	1 cut(s)	346
TaaI	ACNGT	1 cut(s)	42
TaiI	ACGT	1 cut(s)	578
TaqI	TCGA	3 cut(s)	225, 279, 686
TasI	AATT	8 cut(s)	333, 341, 347, 431, 632, 818, 894, 955
TatI	WGTACW	1 cut(s)	840
TfiI	GAWTC	6 cut(s)	114, 227, 325, 425, 512, 967
Tru1I	TTAA	3 cut(s)	275, 345, 821
Tru9I	TTAA	3 cut(s)	275, 345, 821
TscAI	CASTG	1 cut(s)	658
TspDTI	ATGAA	3 cut(s)	326, 710, 1073
TspRI	CASTG	1 cut(s)	658
Tth111I	GACNNNGTC	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	381
XapI	RAATTY	4 cut(s)	347, 431, 632, 894
XceI	RCATGY	1 cut(s)	467
XmiI	GTMKAC	3 cut(s)	495, 645, 927
XmnI	GAANNNNTTC	2 cut(s)	231, 511
XspI	CTAG	7 cut(s)	26, 189, 269, 296, 306, 555, 999
ZrmI	AGTACT	1 cut(s)	842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.