Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007705.1

Orthogroup ID

OG0001385

Physical Location & Seq

Genomic Coordinates Reverse (-)

24087 .. 25231

Gene Structure 1145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007705.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atgcccagcgcccagagagaaatttggcttttactgtactacgatttttttgctcggtggccatggcgttgctttcacaatcgccccattgaaggatctcaattctctgcatgcctagtcaatatcgacgtctctgatattggcaactcctccacacacatctttgcaatcgaattcgacacagttcaagacttggaatttggagatatcaatgacaatcatgtagggatcgacctcaacagcttgaaatcaaacgcctcagctgaagctgcatatcacacagatgccataaccaagcaaaacttcaacctcaagagtgggaaagcaatccaagcctggatagactatgattcagctcaaaatgtaatcaatgtcacaatttcaccactctcttccaaacccaaagccctacttatttctttccatgtagatctctccccgattttcgaaaactcaaaagatcacacagctctgaaaatcggagtcttagtcgctgccattgctctcactctatctgtaatctccatatccatctacttattcatcaggaagctgaagaacgccgagccaatggagtcaggggagctcgagcttggcccacacagatactcctaccgagaactgaaaaaagccacaaaagggttcagaggaaaagtgctcctgggcgaaggcgggttcggccaagtgttcaaaggaacactccccaattccaaaacactagtagccgtcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

244

Amino Acids

27.12

Weight (kDa)

7.06

Isoelectric Point (pI)

29.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55550
fragaria_vesca	FvH4_6g13180 FvH4_7g22900
malus_domestica	MD01G1137300.v1.1 MD01G1137400.v1.1 MD01G1137500.v1.1 MD01G1137600.v1.1 MD01G1137700.v1.1 MD04G1133700.v1.1 MD04G1133800.v1.1 MD12G1147700.v1.1
prunus_persica	Prupe.2G238700_v2.0.a1
pyrus_communis	pycom01g15830 pycom01g15860 pycom01g15870 pycom01g15880 pycom04g12170 pycom12g14140
rosa_chinensis	RchiOBHm_Chr1g0368061 RchiOBHm_Chr3g0465661 RchiOBHm_Chr3g0465671 RchiOBHm_Chr3g0465791 RchiOBHm_Chr4g0404141
rosa_laevigata	RLG00000024618 RLG00000024629 RLG00000024630 RLG00000027242
rosa_multiflora	Rmu_sc0000550.1_g000019 Rmu_sc0005103.1_g000004 Rmu_sc0007705.1_g000006 Rmu_sc0007705.1_g000016 Rmu_sc0007705.1_g000021 Rmu_sc0013273.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288890 Rroxscaffold_6G00414940
rosa_rugosa	Rorug01G0338700 Rorug03G0078100 Rorug03G0078200
rosa_samantha	Rh1AG345700 Rh1BG308000 Rh1CG323600 Rh1DG340100 Rh3BG143600 Rh3CG144600 Rh3CG144700 Rh3CG144800 Rh3CG145700 Rh3DG144900 Rh4AG123100 Rh4BG116200
rosa_wichuraiana	Rw1G030770 Rw3G011660 Rw3G011700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	132
AciI	CCGC	1 cut(s)	672
AclWI	GGATC	2 cut(s)	103, 236
AcoI	YGGCCR	2 cut(s)	59, 679
AcsI	RAATTY	3 cut(s)	21, 173, 197
AcuI	CTGAAG	2 cut(s)	285, 575
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	2 cut(s)	92, 639
AgsI	TTSAA	5 cut(s)	92, 188, 247, 307, 691
AhlI	ACTAGT	1 cut(s)	718
AjnI	CCWGG	2 cut(s)	335, 660
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AluBI	AGCT	8 cut(s)	243, 263, 269, 356, 470, 553, 586, 592
AluI	AGCT	8 cut(s)	243, 263, 269, 356, 470, 553, 586, 592
Alw21I	GWGCWC	2 cut(s)	588, 660
Alw26I	GTCTC	1 cut(s)	136
AlwI	GGATC	2 cut(s)	103, 236
Ama87I	CYCGRG	1 cut(s)	587
AoxI	GGCC	3 cut(s)	59, 595, 679
ApeKI	GCWGC	2 cut(s)	269, 494
ApoI	RAATTY	3 cut(s)	21, 173, 197
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	596
AsuHPI	GGTGA	1 cut(s)	375
AsuII	TTCGAA	1 cut(s)	447
AvaI	CYCGRG	1 cut(s)	587
BalI	TGGCCA	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	588
Bbv12I	GWGCWC	2 cut(s)	588, 660
BbvCI	CCTCAGC	1 cut(s)	259
BbvI	GCAGC	2 cut(s)	256, 481
BccI	CCATC	1 cut(s)	539
BceAI	ACGGC	1 cut(s)	710
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BciT130I	CCWGG	2 cut(s)	337, 662
BcoDI	GTCTC	1 cut(s)	136
BcuI	ACTAGT	1 cut(s)	718
BfaI	CTAG	2 cut(s)	116, 719
BfoI	RGCGCY	1 cut(s)	12
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	2 cut(s)	270, 495
BlsI	GCNGC	2 cut(s)	271, 496
Bme1390I	CCNGG	2 cut(s)	337, 662
BmeT110I	CYCGRG	1 cut(s)	587
BmgT120I	GGNCC	1 cut(s)	596
BmrFI	CCNGG	2 cut(s)	337, 662
BmsI	GCATC	1 cut(s)	274
Bpu10I	CCTNAGC	1 cut(s)	259
Bpu14I	TTCGAA	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	296
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	62, 661
BsaXI	ACNNNNNCTCC	4 cut(s)	474, 504, 593, 623
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 639
Bse3DI	GCAATG	1 cut(s)	498
BseBI	CCWGG	2 cut(s)	337, 662
BseDI	CCNNGG	2 cut(s)	62, 661
BseLI	CCNNNNNNNGG	2 cut(s)	92, 639
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	1 cut(s)	273
BseRI	GAGGAG	1 cut(s)	139
BseXI	GCAGC	2 cut(s)	256, 481
BseYI	CCCAGC	1 cut(s)	5
BshFI	GGCC	3 cut(s)	61, 597, 681
BsiHKAI	GWGCWC	2 cut(s)	588, 660
BsiHKCI	CYCGRG	1 cut(s)	587
BslI	CCNNNNNNNGG	2 cut(s)	92, 639
BsmAI	GTCTC	1 cut(s)	136
BsmBI	CGTCTC	1 cut(s)	136
BsnI	GGCC	3 cut(s)	61, 597, 681
BsoBI	CYCGRG	1 cut(s)	587
Bsp119I	TTCGAA	1 cut(s)	447
Bsp1286I	GDGCHC	2 cut(s)	588, 660
Bsp143I	GATC	4 cut(s)	95, 228, 430, 460
Bsp19I	CCATGG	1 cut(s)	62
BspACI	CCGC	1 cut(s)	672
BspANI	GGCC	3 cut(s)	61, 597, 681
BspCNI	CTCAG	1 cut(s)	272
BspPI	GGATC	2 cut(s)	103, 236
BspT104I	TTCGAA	1 cut(s)	447
BsrDI	GCAATG	1 cut(s)	498
BssECI	CCNNGG	2 cut(s)	62, 661
BssMI	GATC	4 cut(s)	95, 228, 430, 460
BssNI	GRCGYC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	62
Bst2UI	CCWGG	2 cut(s)	337, 662
Bst4CI	ACNGT	2 cut(s)	36, 184
Bst6I	CTCTTC	1 cut(s)	397
BstACI	GRCGYC	1 cut(s)	129
BstBI	TTCGAA	1 cut(s)	447
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	2 cut(s)	259, 487
BstDSI	CCRYGG	1 cut(s)	62
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	4 cut(s)	98, 231, 433, 463
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	4 cut(s)	95, 228, 430, 460
BstMWI	GCNNNNNNNGC	4 cut(s)	269, 332, 500, 678
BstNI	CCWGG	2 cut(s)	337, 662
BstNSI	RCATGY	1 cut(s)	114
BstSCI	CCNGG	2 cut(s)	335, 660
BstV1I	GCAGC	2 cut(s)	256, 481
BstX2I	RGATCY	2 cut(s)	95, 430
BstYI	RGATCY	2 cut(s)	95, 430
BsuRI	GGCC	3 cut(s)	61, 597, 681
BtgI	CCRYGG	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	112
CfoI	GCGC	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	596
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	4 cut(s)	63, 111, 221, 425
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	2 cut(s)	259, 487
DpnI	GATC	4 cut(s)	97, 230, 432, 462
DpnII	GATC	4 cut(s)	95, 228, 430, 460
EaeI	YGGCCR	2 cut(s)	59, 679
Eam1104I	CTCTTC	1 cut(s)	397
EarI	CTCTTC	1 cut(s)	397
Ecl136II	GAGCTC	1 cut(s)	586
Eco130I	CCWWGG	1 cut(s)	62
Eco24I	GRGCYC	1 cut(s)	588
Eco32I	GATATC	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	586
Eco57I	CTGAAG	2 cut(s)	285, 575
Eco88I	CYCGRG	1 cut(s)	587
EcoICRI	GAGCTC	1 cut(s)	586
EcoRI	GAATTC	1 cut(s)	173
EcoRII	CCWGG	2 cut(s)	335, 660
EcoRV	GATATC	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	62
EcoT38I	GRGCYC	1 cut(s)	588
ErhI	CCWWGG	1 cut(s)	62
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	4 cut(s)	66, 114, 224, 428
FaiI	YATR	8 cut(s)	64, 112, 222, 274, 290, 348, 426, 527
FalI	AAGNNNNNCTT	4 cut(s)	287, 319, 396, 428
FatI	CATG	4 cut(s)	62, 110, 220, 424
FauI	CCCGC	1 cut(s)	665
Fnu4HI	GCNGC	2 cut(s)	270, 495
FriOI	GRGCYC	1 cut(s)	588
Fsp4HI	GCNGC	2 cut(s)	270, 495
FspBI	CTAG	2 cut(s)	116, 719
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	2 cut(s)	270, 495
GsaI	CCCAGC	1 cut(s)	9
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	3 cut(s)	61, 597, 681
HhaI	GCGC	1 cut(s)	11
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	4 cut(s)	66, 114, 224, 428
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HinfI	GANTC	3 cut(s)	350, 483, 575
HphI	GGTGA	1 cut(s)	375
Hpy188I	TCNGA	4 cut(s)	136, 474, 482, 647
Hpy188III	TCNNGA	3 cut(s)	188, 313, 547
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	2 cut(s)	86, 662
HpyCH4III	ACNGT	2 cut(s)	36, 184
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	3 cut(s)	110, 167, 272
HpyF10VI	GCNNNNNNNGC	4 cut(s)	269, 332, 500, 678
HpyF3I	CTNAG	2 cut(s)	259, 487
HpySE526I	ACGT	1 cut(s)	129
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	4 cut(s)	66, 114, 224, 428
HspAI	GCGC	1 cut(s)	9
Kzo9I	GATC	4 cut(s)	95, 228, 430, 460
LmnI	GCTCC	2 cut(s)	583, 663
LpnPI	CCDG	8 cut(s)	19, 26, 322, 349, 532, 564, 647, 674
Lsp1109I	GCAGC	2 cut(s)	256, 481
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	2 cut(s)	116, 719
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	4 cut(s)	97, 230, 432, 462
MboI	GATC	4 cut(s)	95, 228, 430, 460
MboII	GAAGA	2 cut(s)	384, 568
MflI	RGATCY	2 cut(s)	95, 430
MhlI	GDGCHC	2 cut(s)	588, 660
MlsI	TGGCCA	1 cut(s)	61
MluCI	AATT	6 cut(s)	21, 101, 173, 197, 378, 706
MluNI	TGGCCA	1 cut(s)	61
MlyI	GAGTC	2 cut(s)	492, 584
MnlI	CCTC	5 cut(s)	160, 245, 268, 320, 641
Mox20I	TGGCCA	1 cut(s)	61
MscI	TGGCCA	1 cut(s)	61
MslI	CAYNNNNRTG	1 cut(s)	282
Msp20I	TGGCCA	1 cut(s)	61
MspA1I	CMGCKG	1 cut(s)	263
MspR9I	CCNGG	2 cut(s)	337, 662
MvaI	CCWGG	2 cut(s)	337, 662
MwoI	GCNNNNNNNGC	4 cut(s)	269, 332, 500, 678
NcoI	CCATGG	1 cut(s)	62
NdeII	GATC	4 cut(s)	95, 228, 430, 460
NlaIII	CATG	4 cut(s)	66, 114, 224, 428
NmeAIII	GCCGAG	1 cut(s)	589
NmuCI	GTSAC	1 cut(s)	373
NspI	RCATGY	1 cut(s)	114
NspV	TTCGAA	1 cut(s)	447
PaeI	GCATGC	1 cut(s)	114
PaeR7I	CTCGAG	1 cut(s)	587
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	2 cut(s)	271, 496
PleI	GAGTC	2 cut(s)	491, 583
PpsI	GAGTC	2 cut(s)	491, 583
Psp124BI	GAGCTC	1 cut(s)	588
Psp6I	CCWGG	2 cut(s)	335, 660
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	2 cut(s)	335, 660
PspPI	GGNCC	1 cut(s)	596
PspXI	VCTCGAGB	1 cut(s)	587
PsuI	RGATCY	2 cut(s)	95, 430
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	282
SacI	GAGCTC	1 cut(s)	588
SatI	GCNGC	2 cut(s)	270, 495
Sau3AI	GATC	4 cut(s)	95, 228, 430, 460
Sau96I	GGNCC	1 cut(s)	596
SchI	GAGTC	2 cut(s)	492, 584
ScrFI	CCNGG	2 cut(s)	337, 662
SduI	GDGCHC	2 cut(s)	588, 660
SfaNI	GCATC	1 cut(s)	274
Sfr274I	CTCGAG	1 cut(s)	587
SfuI	TTCGAA	1 cut(s)	447
SlaI	CTCGAG	1 cut(s)	587
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	2 cut(s)	311, 587
SmoI	CTYRAG	2 cut(s)	311, 587
SpeI	ACTAGT	1 cut(s)	718
SphI	GCATGC	1 cut(s)	114
Sse9I	AATT	6 cut(s)	21, 101, 173, 197, 378, 706
SsiI	CCGC	1 cut(s)	672
SspMI	CTAG	2 cut(s)	116, 719
SstI	GAGCTC	1 cut(s)	588
StyD4I	CCNGG	2 cut(s)	335, 660
StyI	CCWWGG	1 cut(s)	62
TaaI	ACNGT	2 cut(s)	36, 184
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	6 cut(s)	126, 171, 177, 231, 447, 588
TasI	AATT	6 cut(s)	21, 101, 173, 197, 378, 706
TatI	WGTACW	1 cut(s)	36
TfiI	GAWTC	1 cut(s)	350
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	2 cut(s)	269, 494
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	1 cut(s)	532
XapI	RAATTY	3 cut(s)	21, 173, 197
XceI	RCATGY	1 cut(s)	114
XhoI	CTCGAG	1 cut(s)	587
XspI	CTAG	2 cut(s)	116, 719
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.