Rroxscaffold_6G00414940

L-type lectin-domain containing receptor kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
37197740 .. 37200360
2621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00414940.1

Sequence Viewer

Length: 1308 bp
ATGGCAGATCCTCTGATATTGTTCTGTGTTCTTCTTCTGCTCTCAATACCAGTTTCATCTCGGGTCAGTGAGCTCTTCTATCCTGGTTTTAAACATGTGGGCACCAACCTAACCTTGGAAGGAATAGCAGAATTTGAAAACGATCTTGGCATTCTCAAATTGACCAATGACACCAGCAGATTATTGGGTCATGCTTTTTACACTTCCCCAATTCGATTCAAAAACTCCACAAATGGCAAAGCCTTCTCTTTCTCCACCTCATTTGCTTTCACTATAGTTCCTGAGTATCCAAAGCTCGGCGGCCATGGCTTTGCATTCACAATCGCCCCATCGAAGGATCTCAATTCTCTGCCTAGTCAATATCTAGGCCTCTTCAATGGCAGTGATATTGGCAACTCCTCCACACACATCTTTGCAATCGAATTCGACACAGTTCAAGACTTTGAATTTGGAGATATCAATGACAATCATGTAGGGATCGACCTCAACAGCTTGAAATCAAACGCCTCAGCTGAAGCTGCATATTACACAGATGCTACAACCAAACAAAACTTCAACCTCAAGAGTGGGAAAGCAATCCAAGCCTGGATAGACTATGATTCAGCTCAAAATGTAATCAATGTCACAATCTCACCACGCTCTTCCAAACCCAATACCCCACTTATTTCTTTCCATGTAGATCTCTCCCCGATTTTCGAAGAGTTCATGTATGTTGGGTTCTCAGCTTCAACAGGTCTGCTTGCCAGCTCCCACTACATTCTGGGCTGGAGCTTCAAGATTGATGGACAGTCCCAACCCCTTCATCTGGCCTCTCTTCCTAAAATTCCAATACCCAGAAAAGATCACACAGCTCTGAAAATCGGAGTCTCAGTCGCAGCCATTGCTCTCACTCTATCTGTAATCTCCATATCCATCTACTTATTCATCAGGAAGCTGAAGAACGCCGAGCCAATGGAGTCATGGGAGCTCGAGCTCGGCCCACACAGATACTCCTACCAAGAACTGAAAAAAGCAACAAAAGGGTTCAGAGGAAAAGAGCTCCTCGGCGAAGGCGGGTTCGGCCAAGTGTTCAAAGGAACACTCCCCAATTCCAAAACACTAGTAGCCGTCAAGCGAATCTCGAACGATTCGAAACAGGGCCTAAGGGAATTCGTAGCGGAAATCGCAAGCATAGGTAGGCTCCGGCATAGAAATCTAGTCCAATTACTGGGATGGTGTCGCCGAAGAGGCGACCTAATGCTGTCTATGATTACATGCAAAATGGAAGCTTGGATGCTTATTTGTTTGATGAACCGAAATGGGTGTTGA

Protein Analysis

435

Amino Acids

48.11

Weight (kDa)

8.78

Isoelectric Point (pI)

30.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 26 - 272 6.9e-78 Legume lectin domain
Lectin_L-type_dom PF18483 35 - 249 1.4e-11 Legume lectin beta-barrel domain
PK_Tyr_Ser-Thr PF07714 345 - 419 1.4e-11 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 345 - 422 1.7e-10 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 1207
AciI CCGC 3 cut(s) 300, 1053, 1157
AclWI GGATC 3 cut(s) 2, 345, 485
AcoI YGGCCR 2 cut(s) 301, 1060
AcsI RAATTY 5 cut(s) 131, 422, 446, 822, 1148
AcuI CTGAAG 2 cut(s) 534, 956
AfiI CCNNNNNNNGG 5 cut(s) 115, 296, 334, 805, 1207
AflIII ACRYGT 1 cut(s) 94
AhlI ACTAGT 1 cut(s) 1099
AjnI CCWGG 2 cut(s) 82, 584
AjuI GAANNNNNNNTTGG 4 cut(s) 129, 161, 536, 568
Alw21I GWGCWC 4 cut(s) 75, 969, 975, 1041
Alw26I GTCTC 1 cut(s) 871
AlwI GGATC 3 cut(s) 2, 345, 485
Ama87I CYCGRG 2 cut(s) 60, 968
AoxI GGCC 6 cut(s) 301, 367, 807, 976, 1060, 1138
ApeKI GCWGC 2 cut(s) 518, 875
ApoI RAATTY 5 cut(s) 131, 422, 446, 822, 1148
ArsI GACNNNNNNTTYG 2 cut(s) 431, 463
AspS9I GGNCC 2 cut(s) 977, 1138
AsuHPI GGTGA 1 cut(s) 624
AsuII TTCGAA 2 cut(s) 696, 1130
AvaI CYCGRG 2 cut(s) 60, 968
AxyI CCTNAGG 1 cut(s) 1142
BaeGI GKGCMC 1 cut(s) 104
BanI GGYRCC 1 cut(s) 101
BanII GRGCYC 4 cut(s) 75, 969, 975, 1041
Bbv12I GWGCWC 4 cut(s) 75, 969, 975, 1041
BbvCI CCTCAGC 1 cut(s) 508
BbvI GCAGC 2 cut(s) 505, 887
BccI CCATC 4 cut(s) 337, 776, 920, 1206
BceAI ACGGC 1 cut(s) 1091
BciT130I CCWGG 2 cut(s) 84, 586
BciVI GTATCC 1 cut(s) 297
BcoDI GTCTC 1 cut(s) 871
BcuI ACTAGT 1 cut(s) 1099
BfaI CTAG 4 cut(s) 354, 365, 1100, 1196
BfmI CTRYAG 1 cut(s) 273
BfuI GTATCC 1 cut(s) 297
BglI GCCNNNNNGGC 1 cut(s) 1227
BglII AGATCT 1 cut(s) 679
BisI GCNGC 3 cut(s) 301, 519, 876
BlsI GCNGC 3 cut(s) 302, 520, 877
Bme1390I CCNGG 2 cut(s) 84, 586
BmeT110I CYCGRG 2 cut(s) 60, 968
BmgT120I GGNCC 2 cut(s) 977, 1138
BmiI GGNNCC 2 cut(s) 103, 1181
BmrFI CCNGG 2 cut(s) 84, 586
BmrI ACTGGG 1 cut(s) 1217
BmsI GCATC 2 cut(s) 523, 1263
BmuI ACTGGG 1 cut(s) 1217
BpmI CTGGAG 1 cut(s) 787
Bpu10I CCTNAGC 1 cut(s) 508
Bpu14I TTCGAA 2 cut(s) 696, 1130
BpuEI CTTGAG 1 cut(s) 545
BsaJI CCNNGG 3 cut(s) 114, 304, 1042
BsaXI ACNNNNNCTCC 4 cut(s) 855, 885, 974, 1004
Bsc4I CCNNNNNNNGG 5 cut(s) 115, 296, 334, 805, 1207
Bse1I ACTGG 2 cut(s) 50, 1212
Bse21I CCTNAGG 1 cut(s) 1142
Bse3DI GCAATG 1 cut(s) 879
BseBI CCWGG 2 cut(s) 84, 586
BseDI CCNNGG 3 cut(s) 114, 304, 1042
BseGI GGATG 2 cut(s) 1217, 1278
BseLI CCNNNNNNNGG 5 cut(s) 115, 296, 334, 805, 1207
BseMI GCAATG 1 cut(s) 879
BseMII CTCAG 4 cut(s) 273, 522, 735, 882
BseNI ACTGG 2 cut(s) 50, 1212
BseRI GAGGAG 2 cut(s) 388, 1031
BseSI GKGCMC 1 cut(s) 104
BseXI GCAGC 2 cut(s) 505, 887
BshFI GGCC 6 cut(s) 303, 369, 809, 978, 1062, 1140
BshNI GGYRCC 1 cut(s) 101
BsiHKAI GWGCWC 4 cut(s) 75, 969, 975, 1041
BsiHKCI CYCGRG 2 cut(s) 60, 968
BsiSI CCGG 1 cut(s) 1183
BslFI GGGAC 1 cut(s) 775
BslI CCNNNNNNNGG 5 cut(s) 115, 296, 334, 805, 1207
BsmAI GTCTC 1 cut(s) 871
BsmFI GGGAC 1 cut(s) 775
BsmI GAATGC 2 cut(s) 150, 314
BsnI GGCC 6 cut(s) 303, 369, 809, 978, 1062, 1140
BsoBI CYCGRG 2 cut(s) 60, 968
Bsp119I TTCGAA 2 cut(s) 696, 1130
Bsp1286I GDGCHC 5 cut(s) 75, 104, 969, 975, 1041
Bsp143I GATC 6 cut(s) 7, 142, 337, 477, 679, 841
Bsp19I CCATGG 1 cut(s) 304
BspACI CCGC 3 cut(s) 300, 1053, 1157
BspANI GGCC 6 cut(s) 303, 369, 809, 978, 1062, 1140
BspCNI CTCAG 4 cut(s) 274, 521, 734, 881
BspLI GGNNCC 2 cut(s) 103, 1181
BspPI GGATC 3 cut(s) 2, 345, 485
BspQI GCTCTTC 2 cut(s) 80, 646
BspT104I TTCGAA 2 cut(s) 696, 1130
BspT107I GGYRCC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 879
BsrI ACTGG 2 cut(s) 50, 1212
BssECI CCNNGG 3 cut(s) 114, 304, 1042
BssMI GATC 6 cut(s) 7, 142, 337, 477, 679, 841
BssT1I CCWWGG 2 cut(s) 114, 304
Bst2UI CCWGG 2 cut(s) 84, 586
Bst4CI ACNGT 2 cut(s) 433, 789
Bst6I CTCTTC 6 cut(s) 80, 377, 646, 693, 819, 1219
BstAPI GCANNNNNTGC 1 cut(s) 881
BstBI TTCGAA 2 cut(s) 696, 1130
BstC8I GCNNGC 3 cut(s) 741, 745, 1168
BstDEI CTNAG 5 cut(s) 282, 508, 721, 868, 1142
BstDSI CCRYGG 1 cut(s) 304
BstF5I GGATG 2 cut(s) 1217, 1278
BstKTI GATC 6 cut(s) 10, 145, 340, 480, 682, 844
BstMAI GTCTC 1 cut(s) 871
BstMBI GATC 6 cut(s) 7, 142, 337, 477, 679, 841
BstMWI GCNNNNNNNGC 7 cut(s) 306, 518, 581, 881, 1059, 1163, 1227
BstNI CCWGG 2 cut(s) 84, 586
BstNSI RCATGY 2 cut(s) 98, 1257
BstSCI CCNGG 2 cut(s) 82, 584
BstSFI CTRYAG 1 cut(s) 273
BstSLI GKGCMC 1 cut(s) 104
BstV1I GCAGC 2 cut(s) 505, 887
BstX2I RGATCY 3 cut(s) 7, 337, 679
BstYI RGATCY 3 cut(s) 7, 337, 679
Bsu36I CCTNAGG 1 cut(s) 1142
BsuI GTATCC 1 cut(s) 297
BsuRI GGCC 6 cut(s) 303, 369, 809, 978, 1062, 1140
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 2 cut(s) 1217, 1278
BtsI GCAGTG 1 cut(s) 388
BtsIMutI CAGTG 2 cut(s) 73, 388
Cac8I GCNNGC 3 cut(s) 741, 745, 1168
Cfr13I GGNCC 2 cut(s) 977, 1138
CspCI CAANNNNNGTGG 2 cut(s) 244, 279
CviAII CATG 8 cut(s) 95, 191, 305, 470, 674, 706, 960, 1254
DdeI CTNAG 5 cut(s) 282, 508, 721, 868, 1142
DpnI GATC 6 cut(s) 9, 144, 339, 479, 681, 843
DpnII GATC 6 cut(s) 7, 142, 337, 477, 679, 841
DraI TTTAAA 1 cut(s) 91
EaeI YGGCCR 2 cut(s) 301, 1060
Eam1104I CTCTTC 6 cut(s) 80, 377, 646, 693, 819, 1219
EarI CTCTTC 6 cut(s) 80, 377, 646, 693, 819, 1219
Ecl136II GAGCTC 4 cut(s) 73, 967, 973, 1039
Eco130I CCWWGG 2 cut(s) 114, 304
Eco147I AGGCCT 1 cut(s) 369
Eco24I GRGCYC 4 cut(s) 75, 969, 975, 1041
Eco32I GATATC 1 cut(s) 457
Eco53kI GAGCTC 4 cut(s) 73, 967, 973, 1039
Eco57I CTGAAG 2 cut(s) 534, 956
Eco81I CCTNAGG 1 cut(s) 1142
Eco88I CYCGRG 2 cut(s) 60, 968
EcoICRI GAGCTC 4 cut(s) 73, 967, 973, 1039
EcoO109I RGGNCCY 1 cut(s) 1138
EcoRI GAATTC 2 cut(s) 422, 1148
EcoRII CCWGG 2 cut(s) 82, 584
EcoRV GATATC 1 cut(s) 457
EcoT14I CCWWGG 2 cut(s) 114, 304
EcoT38I GRGCYC 4 cut(s) 75, 969, 975, 1041
ErhI CCWWGG 2 cut(s) 114, 304
FaeI CATG 8 cut(s) 98, 194, 308, 473, 677, 709, 963, 1257
FaqI GGGAC 1 cut(s) 775
FatI CATG 8 cut(s) 94, 190, 304, 469, 673, 705, 959, 1253
FauI CCCGC 1 cut(s) 1046
Fnu4HI GCNGC 3 cut(s) 301, 519, 876
FokI GGATG 2 cut(s) 1224, 1285
FriOI GRGCYC 4 cut(s) 75, 969, 975, 1041
Fsp4HI GCNGC 3 cut(s) 301, 519, 876
FspBI CTAG 4 cut(s) 354, 365, 1100, 1196
GluI GCNGC 3 cut(s) 301, 519, 876
GsuI CTGGAG 1 cut(s) 787
HaeIII GGCC 6 cut(s) 303, 369, 809, 978, 1062, 1140
HapII CCGG 1 cut(s) 1183
Hin1II CATG 8 cut(s) 98, 194, 308, 473, 677, 709, 963, 1257
HindIII AAGCTT 1 cut(s) 1266
HinfI GANTC 6 cut(s) 216, 599, 864, 956, 1116, 1127
HpaII CCGG 1 cut(s) 1183
HphI GGTGA 1 cut(s) 624
Hpy188I TCNGA 4 cut(s) 15, 855, 863, 1028
Hpy188III TCNNGA 6 cut(s) 281, 437, 562, 775, 928, 1120
HpyAV CCTTC 5 cut(s) 113, 253, 328, 809, 1043
HpyCH4III ACNGT 2 cut(s) 433, 789
HpyCH4V TGCA 4 cut(s) 314, 416, 521, 1257
HpyF10VI GCNNNNNNNGC 7 cut(s) 306, 518, 581, 881, 1059, 1163, 1227
HpyF3I CTNAG 5 cut(s) 282, 508, 721, 868, 1142
Hsp92II CATG 8 cut(s) 98, 194, 308, 473, 677, 709, 963, 1257
Kzo9I GATC 6 cut(s) 7, 142, 337, 477, 679, 841
LguI GCTCTTC 2 cut(s) 80, 646
LmnI GCTCC 5 cut(s) 752, 768, 964, 1044, 1185
Lsp1109I GCAGC 2 cut(s) 505, 887
LweI GCATC 2 cut(s) 523, 1263
MaeI CTAG 4 cut(s) 354, 365, 1100, 1196
MaeIII GTNAC 1 cut(s) 622
MalI GATC 6 cut(s) 9, 144, 339, 479, 681, 843
MboI GATC 6 cut(s) 7, 142, 337, 477, 679, 841
MboII GAAGA 9 cut(s) 23, 26, 67, 364, 633, 710, 806, 949, 1236
MflI RGATCY 3 cut(s) 7, 337, 679
MhlI GDGCHC 5 cut(s) 75, 104, 969, 975, 1041
MlyI GAGTC 2 cut(s) 873, 965
MseI TTAA 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 1 cut(s) 1183
MspR9I CCNGG 2 cut(s) 84, 586
Mva1269I GAATGC 2 cut(s) 150, 314
MvaI CCWGG 2 cut(s) 84, 586
MwoI GCNNNNNNNGC 7 cut(s) 306, 518, 581, 881, 1059, 1163, 1227
NcoI CCATGG 1 cut(s) 304
NdeII GATC 6 cut(s) 7, 142, 337, 477, 679, 841
NlaIII CATG 8 cut(s) 98, 194, 308, 473, 677, 709, 963, 1257
NlaIV GGNNCC 2 cut(s) 103, 1181
NmeAIII GCCGAG 4 cut(s) 276, 954, 970, 1023
NmuCI GTSAC 1 cut(s) 622
NspI RCATGY 2 cut(s) 98, 1257
NspV TTCGAA 2 cut(s) 696, 1130
PaeR7I CTCGAG 1 cut(s) 968
PceI AGGCCT 1 cut(s) 369
PciI ACATGT 1 cut(s) 94
PciSI GCTCTTC 2 cut(s) 80, 646
PcsI WCGNNNNNNNCGW 1 cut(s) 1127
PctI GAATGC 2 cut(s) 150, 314
PfeI GAWTC 4 cut(s) 216, 599, 1116, 1127
PflMI CCANNNNNTGG 1 cut(s) 1207
PkrI GCNGC 3 cut(s) 302, 520, 877
PleI GAGTC 2 cut(s) 872, 964
PpsI GAGTC 2 cut(s) 872, 964
PscI ACATGT 1 cut(s) 94
Psp124BI GAGCTC 4 cut(s) 75, 969, 975, 1041
Psp6I CCWGG 2 cut(s) 82, 584
PspGI CCWGG 2 cut(s) 82, 584
PspN4I GGNNCC 2 cut(s) 103, 1181
PspPI GGNCC 2 cut(s) 977, 1138
PspXI VCTCGAGB 1 cut(s) 968
PsrI GAACNNNNNNTAC 2 cut(s) 701, 733
PsuI RGATCY 3 cut(s) 7, 337, 679
PvuII CAGCTG 1 cut(s) 512
SacI GAGCTC 4 cut(s) 75, 969, 975, 1041
SapI GCTCTTC 2 cut(s) 80, 646
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 3 cut(s) 301, 519, 876
Sau3AI GATC 6 cut(s) 7, 142, 337, 477, 679, 841
Sau96I GGNCC 2 cut(s) 977, 1138
SchI GAGTC 2 cut(s) 873, 965
ScrFI CCNGG 2 cut(s) 84, 586
SduI GDGCHC 5 cut(s) 75, 104, 969, 975, 1041
SfaNI GCATC 2 cut(s) 523, 1263
SfcI CTRYAG 1 cut(s) 273
Sfr274I CTCGAG 1 cut(s) 968
SfuI TTCGAA 2 cut(s) 696, 1130
SlaI CTCGAG 1 cut(s) 968
SmlI CTYRAG 2 cut(s) 560, 968
SmoI CTYRAG 2 cut(s) 560, 968
SpeI ACTAGT 1 cut(s) 1099
SseBI AGGCCT 1 cut(s) 369
SsiI CCGC 3 cut(s) 300, 1053, 1157
SspMI CTAG 4 cut(s) 354, 365, 1100, 1196
SstI GAGCTC 4 cut(s) 75, 969, 975, 1041
StuI AGGCCT 1 cut(s) 369
StyD4I CCNGG 2 cut(s) 82, 584
StyI CCWWGG 2 cut(s) 114, 304
TaaI ACNGT 2 cut(s) 433, 789
TaqI TCGA 9 cut(s) 214, 332, 420, 426, 480, 696, 969, 1121, 1130
TauI GCSGC 1 cut(s) 303
TfiI GAWTC 4 cut(s) 216, 599, 1116, 1127
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 2 cut(s) 73, 388
TseFI GTSAC 1 cut(s) 622
TseI GCWGC 2 cut(s) 518, 875
Tsp45I GTSAC 1 cut(s) 622
TspDTI ATGAA 5 cut(s) 45, 694, 791, 913, 1304
TspRI CASTG 2 cut(s) 73, 388
Van91I CCANNNNNTGG 1 cut(s) 1207
XapI RAATTY 5 cut(s) 131, 422, 446, 822, 1148
XceI RCATGY 2 cut(s) 98, 1257
XcmI CCANNNNNNNNNTGG 3 cut(s) 112, 181, 957
XhoI CTCGAG 1 cut(s) 968
XspI CTAG 4 cut(s) 354, 365, 1100, 1196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.