Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001385

Physical Location & Seq

Genomic Coordinates Forward (+)

12046560 .. 12048633

Gene Structure 2074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG144800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGATTCAGCTCAAAATAAAAGATCACACAGCTCTGAAAATCGGAGTCTCAATCGCAGCCATTGCTCTCACTCTATCTGTAATCTCCATATCCATCTACTTATTCATCAGGAAGCTGAAGAACGACGAGCCAATTGAGTCATGGGAGCTCGAGCTCGGCCCACACAGATACTCCCACCACCAAGAACTGAAAAAAGCCACAAAAGGGTTCAGAGGAAAAGTGCTCCTCGGCGAAGGCGGGTTCGGCCAAGTGTTCAAAGGAACACTCCCCAATTCCAAAACACTAGTAGCCGTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

99

Amino Acids

10.97

Weight (kDa)

9.87

Isoelectric Point (pI)

6.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55550
fragaria_vesca	FvH4_6g13180 FvH4_7g22900
malus_domestica	MD01G1137300.v1.1 MD01G1137400.v1.1 MD01G1137500.v1.1 MD01G1137600.v1.1 MD01G1137700.v1.1 MD04G1133700.v1.1 MD04G1133800.v1.1 MD12G1147700.v1.1
prunus_persica	Prupe.2G238700_v2.0.a1
pyrus_communis	pycom01g15830 pycom01g15860 pycom01g15870 pycom01g15880 pycom04g12170 pycom12g14140
rosa_chinensis	RchiOBHm_Chr1g0368061 RchiOBHm_Chr3g0465661 RchiOBHm_Chr3g0465671 RchiOBHm_Chr3g0465791 RchiOBHm_Chr4g0404141
rosa_laevigata	RLG00000024618 RLG00000024629 RLG00000024630 RLG00000027242
rosa_multiflora	Rmu_sc0000550.1_g000019 Rmu_sc0005103.1_g000004 Rmu_sc0007705.1_g000006 Rmu_sc0007705.1_g000016 Rmu_sc0007705.1_g000021 Rmu_sc0013273.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288890 Rroxscaffold_6G00414940
rosa_rugosa	Rorug01G0338700 Rorug03G0078100 Rorug03G0078200
rosa_samantha	Rh1AG345700 Rh1BG308000 Rh1CG323600 Rh1DG340100 Rh3BG143600 Rh3CG144600 Rh3CG144700 Rh3CG144800 Rh3CG145700 Rh3DG144900 Rh4AG123100 Rh4BG116200
rosa_wichuraiana	Rw1G030770 Rw3G011660 Rw3G011700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	237
AcoI	YGGCCR	1 cut(s)	244
AcuI	CTGAAG	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	204
AgsI	TTSAA	1 cut(s)	256
AhlI	ACTAGT	1 cut(s)	283
AluBI	AGCT	5 cut(s)	10, 32, 115, 148, 154
AluI	AGCT	5 cut(s)	10, 32, 115, 148, 154
Alw21I	GWGCWC	3 cut(s)	150, 156, 225
Alw26I	GTCTC	1 cut(s)	52
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	2 cut(s)	157, 244
ApeKI	GCWGC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	158
AvaI	CYCGRG	1 cut(s)	149
BanII	GRGCYC	2 cut(s)	150, 156
Bbv12I	GWGCWC	3 cut(s)	150, 156, 225
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	1 cut(s)	101
BceAI	ACGGC	1 cut(s)	275
BcoDI	GTCTC	1 cut(s)	52
BcuI	ACTAGT	1 cut(s)	283
BfaI	CTAG	1 cut(s)	284
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	226
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	226
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseMI	GCAATG	1 cut(s)	60
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	68
BshFI	GGCC	2 cut(s)	159, 246
BsiHKAI	GWGCWC	3 cut(s)	150, 156, 225
BsiHKCI	CYCGRG	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	204
BsmAI	GTCTC	1 cut(s)	52
BsnI	GGCC	2 cut(s)	159, 246
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	3 cut(s)	150, 156, 225
Bsp143I	GATC	1 cut(s)	22
BspACI	CCGC	1 cut(s)	237
BspANI	GGCC	2 cut(s)	159, 246
BsrDI	GCAATG	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	1 cut(s)	22
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstKTI	GATC	1 cut(s)	25
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 243
BstV1I	GCAGC	1 cut(s)	68
BsuRI	GGCC	2 cut(s)	159, 246
Cfr13I	GGNCC	1 cut(s)	158
CviAII	CATG	1 cut(s)	141
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	244
Ecl136II	GAGCTC	2 cut(s)	148, 154
Eco24I	GRGCYC	2 cut(s)	150, 156
Eco53kI	GAGCTC	2 cut(s)	148, 154
Eco57I	CTGAAG	1 cut(s)	137
Eco88I	CYCGRG	1 cut(s)	149
EcoICRI	GAGCTC	2 cut(s)	148, 154
EcoT38I	GRGCYC	2 cut(s)	150, 156
FaeI	CATG	1 cut(s)	144
FaiI	YATR	2 cut(s)	89, 142
FatI	CATG	1 cut(s)	140
FauI	CCCGC	1 cut(s)	230
Fnu4HI	GCNGC	1 cut(s)	57
FriOI	GRGCYC	2 cut(s)	150, 156
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	284
GluI	GCNGC	1 cut(s)	57
HaeIII	GGCC	2 cut(s)	159, 246
Hin1II	CATG	1 cut(s)	144
HinfI	GANTC	3 cut(s)	4, 45, 137
Hpy188I	TCNGA	3 cut(s)	36, 44, 212
Hpy188III	TCNNGA	1 cut(s)	109
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 243
Hsp92II	CATG	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	22
LmnI	GCTCC	2 cut(s)	145, 228
LpnPI	CCDG	1 cut(s)	94
Lsp1109I	GCAGC	1 cut(s)	68
MaeI	CTAG	1 cut(s)	284
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	1 cut(s)	130
MfeI	CAATTG	1 cut(s)	132
MhlI	GDGCHC	3 cut(s)	150, 156, 225
MluCI	AATT	2 cut(s)	132, 271
MlyI	GAGTC	2 cut(s)	54, 146
MnlI	CCTC	2 cut(s)	206, 236
MunI	CAATTG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	62, 243
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	1 cut(s)	144
NmeAIII	GCCGAG	2 cut(s)	135, 207
PaeR7I	CTCGAG	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	2 cut(s)	53, 145
PpsI	GAGTC	2 cut(s)	53, 145
Psp124BI	GAGCTC	2 cut(s)	150, 156
PspPI	GGNCC	1 cut(s)	158
PspXI	VCTCGAGB	1 cut(s)	149
SacI	GAGCTC	2 cut(s)	150, 156
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	1 cut(s)	158
SchI	GAGTC	2 cut(s)	54, 146
SduI	GDGCHC	3 cut(s)	150, 156, 225
SetI	ASST	5 cut(s)	12, 34, 117, 150, 156
Sfr274I	CTCGAG	1 cut(s)	149
SlaI	CTCGAG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SpeI	ACTAGT	1 cut(s)	283
Sse9I	AATT	2 cut(s)	132, 271
SsiI	CCGC	1 cut(s)	237
SspMI	CTAG	1 cut(s)	284
SstI	GAGCTC	2 cut(s)	150, 156
TaqI	TCGA	1 cut(s)	150
TasI	AATT	2 cut(s)	132, 271
TfiI	GAWTC	1 cut(s)	4
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	1 cut(s)	94
XcmI	CCANNNNNNNNNTGG	1 cut(s)	138
XhoI	CTCGAG	1 cut(s)	149
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.