Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007705.1

Orthogroup ID

OG0001385

Physical Location & Seq

Genomic Coordinates Reverse (-)

71405 .. 73167

Gene Structure 1763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007705.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

atgtcccctcaaacaattctctcaagttgtatggtgtggtacgaggagtataaagcagtgcatggtagtgaaaataaagggcataagtcacatatgagcaagtattggaagcctcatatgcacaacaagctaaaattaaatgttgatggcgctttcttgccatcctcaacatctgggggtgttggaagtgttctaaggaatgcaaatggtgagtttatagctgatttctcacgtcatcttcaacaggtctgcttgctatgtcccactacattcttggctggagcttcaagattgatggacagccccaaccccttcatctggcctctcttcctaaaattccaaaacccaaaaaaaaatcacacagctctgaaaatcggagtctcagtcgcagccattgctctcactccatctgtaatctccttatccgtctacttattcatcaagaagctcaagaacaccgagccaatggagtcatgggagctcgagctcggcccacacagatactcctaccaagaactgaaaaaggccacaaaagggttcagaggaaaagagctcctcggcgaaggcgggttcggccaagtattcaaaggaacccaagtagccgtcaagcgaatctcgaacgattcgaaacagggtctaagggaattcgtggaggaaatcgcaagcataggtaggctccgccatagaaatctaaggtttgggattataaaggggattgcttctgcgcttcattatctacccgaagggtttgagcaggttgtggttcacagagatgtcaaggccagcaatgtgttgctggatagtgaaatgaatgggaggcttggggattttgggttggcgaggctgcatgaacaggggtcgaactcgaatacgactcgggtcgtgggtacgctcgggtatttggctccggagttgccgagaaacgggaaggcgagtacgggttcggatgtgtatgcgtttggcgcgctttttgctggaggtggtatgcgggcggaggcccattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

334

Amino Acids

36.79

Weight (kDa)

9.61

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55550
fragaria_vesca	FvH4_6g13180 FvH4_7g22900
malus_domestica	MD01G1137300.v1.1 MD01G1137400.v1.1 MD01G1137500.v1.1 MD01G1137600.v1.1 MD01G1137700.v1.1 MD04G1133700.v1.1 MD04G1133800.v1.1 MD12G1147700.v1.1
prunus_persica	Prupe.2G238700_v2.0.a1
pyrus_communis	pycom01g15830 pycom01g15860 pycom01g15870 pycom01g15880 pycom04g12170 pycom12g14140
rosa_chinensis	RchiOBHm_Chr1g0368061 RchiOBHm_Chr3g0465661 RchiOBHm_Chr3g0465671 RchiOBHm_Chr3g0465791 RchiOBHm_Chr4g0404141
rosa_laevigata	RLG00000024618 RLG00000024629 RLG00000024630 RLG00000027242
rosa_multiflora	Rmu_sc0000550.1_g000019 Rmu_sc0005103.1_g000004 Rmu_sc0007705.1_g000006 Rmu_sc0007705.1_g000016 Rmu_sc0007705.1_g000021 Rmu_sc0013273.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288890 Rroxscaffold_6G00414940
rosa_rugosa	Rorug01G0338700 Rorug03G0078100 Rorug03G0078200
rosa_samantha	Rh1AG345700 Rh1BG308000 Rh1CG323600 Rh1DG340100 Rh3BG143600 Rh3CG144600 Rh3CG144700 Rh3CG144800 Rh3CG145700 Rh3DG144900 Rh4AG123100 Rh4BG116200
rosa_wichuraiana	Rw1G030770 Rw3G011660 Rw3G011700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	707
Acc36I	ACCTGC	1 cut(s)	745
AccI	GTMKAC	1 cut(s)	429
AccII	CGCG	1 cut(s)	965
AccIII	TCCGGA	1 cut(s)	907
AciI	CCGC	4 cut(s)	567, 679, 988, 992
AcoI	YGGCCR	1 cut(s)	574
AcsI	RAATTY	2 cut(s)	335, 644
AfaI	GTAC	3 cut(s)	41, 889, 937
AfiI	CCNNNNNNNGG	3 cut(s)	318, 534, 923
AgsI	TTSAA	3 cut(s)	242, 288, 586
AjiI	CACGTC	1 cut(s)	233
AluBI	AGCT	8 cut(s)	130, 221, 284, 365, 448, 481, 487, 553
AluI	AGCT	8 cut(s)	130, 221, 284, 365, 448, 481, 487, 553
Alw21I	GWGCWC	3 cut(s)	483, 489, 555
Alw26I	GTCTC	1 cut(s)	385
Ama87I	CYCGRG	3 cut(s)	482, 876, 893
Aor13HI	TCCGGA	1 cut(s)	907
AoxI	GGCC	6 cut(s)	320, 490, 525, 574, 780, 996
ApeKI	GCWGC	2 cut(s)	389, 844
ApoI	RAATTY	2 cut(s)	335, 644
AspLEI	GCGC	4 cut(s)	152, 727, 965, 967
AspS9I	GGNCC	2 cut(s)	491, 997
AsuHPI	GGTGA	1 cut(s)	221
AsuII	TTCGAA	1 cut(s)	626
AvaI	CYCGRG	3 cut(s)	482, 876, 893
BanII	GRGCYC	3 cut(s)	483, 489, 555
Bbv12I	GWGCWC	3 cut(s)	483, 489, 555
BbvI	GCAGC	2 cut(s)	401, 831
BccI	CCATC	4 cut(s)	140, 169, 289, 415
BceAI	ACGGC	1 cut(s)	587
BcoDI	GTCTC	1 cut(s)	385
BfoI	RGCGCY	1 cut(s)	153
BfuAI	ACCTGC	1 cut(s)	745
BisI	GCNGC	2 cut(s)	390, 845
BlsI	GCNGC	2 cut(s)	391, 846
BmeT110I	CYCGRG	3 cut(s)	482, 876, 893
BmgBI	CACGTC	1 cut(s)	233
BmgT120I	GGNCC	2 cut(s)	491, 997
BmiI	GGNNCC	3 cut(s)	592, 677, 906
BoxI	GACNNNNGTC	1 cut(s)	878
BpmI	CTGGAG	2 cut(s)	300, 996
Bpu14I	TTCGAA	1 cut(s)	626
BpuEI	CTTGAG	2 cut(s)	7, 434
BsaJI	CCNNGG	1 cut(s)	556
BsaWI	WCCGGW	1 cut(s)	907
BsaXI	ACNNNNNCTCC	4 cut(s)	369, 399, 488, 518
Bsc4I	CCNNNNNNNGG	3 cut(s)	318, 534, 923
Bse3DI	GCAATG	2 cut(s)	393, 793
BseAI	TCCGGA	1 cut(s)	907
BseDI	CCNNGG	1 cut(s)	556
BseGI	GGATG	2 cut(s)	161, 952
BseLI	CCNNNNNNNGG	3 cut(s)	318, 534, 923
BseMI	GCAATG	2 cut(s)	393, 793
BseMII	CTCAG	1 cut(s)	396
BsePI	GCGCGC	1 cut(s)	963
BseRI	GAGGAG	2 cut(s)	59, 545
BseXI	GCAGC	2 cut(s)	401, 831
Bsh1236I	CGCG	1 cut(s)	965
BshFI	GGCC	6 cut(s)	322, 492, 527, 576, 782, 998
BsiHKAI	GWGCWC	3 cut(s)	483, 489, 555
BsiHKCI	CYCGRG	3 cut(s)	482, 876, 893
BsiSI	CCGG	1 cut(s)	908
BslFI	GGGAC	1 cut(s)	246
BslI	CCNNNNNNNGG	3 cut(s)	318, 534, 923
BsmAI	GTCTC	1 cut(s)	385
BsmFI	GGGAC	1 cut(s)	246
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	6 cut(s)	322, 492, 527, 576, 782, 998
BsoBI	CYCGRG	3 cut(s)	482, 876, 893
Bsp119I	TTCGAA	1 cut(s)	626
Bsp1286I	GDGCHC	3 cut(s)	483, 489, 555
Bsp13I	TCCGGA	1 cut(s)	907
BspACI	CCGC	4 cut(s)	567, 679, 988, 992
BspANI	GGCC	6 cut(s)	322, 492, 527, 576, 782, 998
BspCNI	CTCAG	1 cut(s)	395
BspEI	TCCGGA	1 cut(s)	907
BspFNI	CGCG	1 cut(s)	965
BspLI	GGNNCC	3 cut(s)	592, 677, 906
BspMI	ACCTGC	1 cut(s)	745
BspT104I	TTCGAA	1 cut(s)	626
BsrDI	GCAATG	2 cut(s)	393, 793
BssECI	CCNNGG	1 cut(s)	556
BssHII	GCGCGC	1 cut(s)	963
Bst6I	CTCTTC	1 cut(s)	332
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstBI	TTCGAA	1 cut(s)	626
BstC8I	GCNNGC	5 cut(s)	254, 664, 784, 965, 990
BstDEI	CTNAG	4 cut(s)	194, 382, 638, 692
BstF5I	GGATG	2 cut(s)	161, 952
BstFNI	CGCG	1 cut(s)	965
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	4 cut(s)	152, 727, 965, 967
BstMAI	GTCTC	1 cut(s)	385
BstMWI	GCNNNNNNNGC	6 cut(s)	118, 127, 395, 573, 962, 971
BstPAI	GACNNNNGTC	1 cut(s)	878
BstUI	CGCG	1 cut(s)	965
BstV1I	GCAGC	2 cut(s)	401, 831
BsuRI	GGCC	6 cut(s)	322, 492, 527, 576, 782, 998
BtrI	CACGTC	1 cut(s)	233
BtsCI	GGATG	2 cut(s)	161, 952
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	745
Cac8I	GCNNGC	5 cut(s)	254, 664, 784, 965, 990
CfoI	GCGC	4 cut(s)	152, 727, 965, 967
Cfr13I	GGNCC	2 cut(s)	491, 997
Csp6I	GTAC	3 cut(s)	40, 888, 936
CviAII	CATG	3 cut(s)	62, 474, 848
CviQI	GTAC	3 cut(s)	40, 888, 936
DdeI	CTNAG	4 cut(s)	194, 382, 638, 692
EaeI	YGGCCR	1 cut(s)	574
Eam1104I	CTCTTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	332
EciI	GGCGGA	1 cut(s)	668
Ecl136II	GAGCTC	3 cut(s)	481, 487, 553
Eco24I	GRGCYC	3 cut(s)	483, 489, 555
Eco53kI	GAGCTC	3 cut(s)	481, 487, 553
Eco88I	CYCGRG	3 cut(s)	482, 876, 893
EcoICRI	GAGCTC	3 cut(s)	481, 487, 553
EcoRI	GAATTC	1 cut(s)	644
EcoT38I	GRGCYC	3 cut(s)	483, 489, 555
FaeI	CATG	3 cut(s)	65, 477, 851
FaqI	GGGAC	1 cut(s)	246
FatI	CATG	3 cut(s)	61, 473, 847
FauI	CCCGC	2 cut(s)	560, 981
FauNDI	CATATG	2 cut(s)	93, 117
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	2 cut(s)	390, 845
FokI	GGATG	2 cut(s)	148, 959
FriOI	GRGCYC	3 cut(s)	483, 489, 555
Fsp4HI	GCNGC	2 cut(s)	390, 845
GlaI	GCGC	4 cut(s)	151, 726, 964, 966
GluI	GCNGC	2 cut(s)	390, 845
GsuI	CTGGAG	2 cut(s)	300, 996
HaeII	RGCGCY	1 cut(s)	153
HaeIII	GGCC	6 cut(s)	322, 492, 527, 576, 782, 998
HapII	CCGG	1 cut(s)	908
HhaI	GCGC	4 cut(s)	152, 727, 965, 967
Hin1II	CATG	3 cut(s)	65, 477, 851
Hin6I	GCGC	4 cut(s)	150, 725, 963, 965
HinP1I	GCGC	4 cut(s)	150, 725, 963, 965
HinfI	GANTC	5 cut(s)	378, 470, 612, 623, 874
HpaII	CCGG	1 cut(s)	908
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	2 cut(s)	430, 766
Hpy188I	TCNGA	4 cut(s)	369, 377, 542, 946
Hpy188III	TCNNGA	5 cut(s)	288, 442, 451, 616, 908
Hpy8I	GTNNAC	2 cut(s)	430, 766
HpyAV	CCTTC	4 cut(s)	322, 557, 737, 922
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	4 cut(s)	61, 121, 203, 847
HpyF10VI	GCNNNNNNNGC	6 cut(s)	118, 127, 395, 573, 962, 971
HpyF3I	CTNAG	4 cut(s)	194, 382, 638, 692
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	3 cut(s)	65, 477, 851
HspAI	GCGC	4 cut(s)	150, 725, 963, 965
Kpn2I	TCCGGA	1 cut(s)	907
LmnI	GCTCC	5 cut(s)	281, 478, 558, 681, 910
Lsp1109I	GCAGC	2 cut(s)	401, 831
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	1 cut(s)	87
MboII	GAAGA	2 cut(s)	230, 319
MhlI	GDGCHC	3 cut(s)	483, 489, 555
MluCI	AATT	4 cut(s)	15, 134, 335, 644
MlyI	GAGTC	3 cut(s)	387, 479, 868
MmeI	TCCRAC	1 cut(s)	163
MroI	TCCGGA	1 cut(s)	907
MseI	TTAA	1 cut(s)	137
MslI	CAYNNNNRTG	2 cut(s)	66, 771
MspI	CCGG	1 cut(s)	908
Mva1269I	GAATGC	1 cut(s)	205
MvnI	CGCG	1 cut(s)	965
MwoI	GCNNNNNNNGC	6 cut(s)	118, 127, 395, 573, 962, 971
NdeI	CATATG	2 cut(s)	93, 117
NlaIII	CATG	3 cut(s)	65, 477, 851
NlaIV	GGNNCC	3 cut(s)	592, 677, 906
NmeAIII	GCCGAG	3 cut(s)	468, 537, 942
NmuCI	GTSAC	1 cut(s)	87
NspV	TTCGAA	1 cut(s)	626
PaeR7I	CTCGAG	1 cut(s)	482
PauI	GCGCGC	1 cut(s)	963
PcsI	WCGNNNNNNNCGW	1 cut(s)	623
PctI	GAATGC	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	612, 623
PkrI	GCNGC	2 cut(s)	391, 846
PleI	GAGTC	3 cut(s)	386, 478, 868
PpsI	GAGTC	3 cut(s)	386, 478, 868
PshAI	GACNNNNGTC	1 cut(s)	878
PsiI	TTATAA	1 cut(s)	707
Psp124BI	GAGCTC	3 cut(s)	483, 489, 555
PspN4I	GGNNCC	3 cut(s)	592, 677, 906
PspPI	GGNCC	2 cut(s)	491, 997
PspXI	VCTCGAGB	1 cut(s)	482
PteI	GCGCGC	1 cut(s)	963
RsaI	GTAC	3 cut(s)	41, 889, 937
RsaNI	GTAC	3 cut(s)	40, 888, 936
RseI	CAYNNNNRTG	2 cut(s)	66, 771
SacI	GAGCTC	3 cut(s)	483, 489, 555
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	2 cut(s)	390, 845
Sau96I	GGNCC	2 cut(s)	491, 997
SchI	GAGTC	3 cut(s)	387, 479, 868
SduI	GDGCHC	3 cut(s)	483, 489, 555
Sfr274I	CTCGAG	1 cut(s)	482
SfuI	TTCGAA	1 cut(s)	626
SlaI	CTCGAG	1 cut(s)	482
SmiMI	CAYNNNNRTG	2 cut(s)	66, 771
SmlI	CTYRAG	3 cut(s)	22, 449, 482
SmoI	CTYRAG	3 cut(s)	22, 449, 482
Sse9I	AATT	4 cut(s)	15, 134, 335, 644
SsiI	CCGC	4 cut(s)	567, 679, 988, 992
SstI	GAGCTC	3 cut(s)	483, 489, 555
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	5 cut(s)	483, 617, 626, 860, 866
TasI	AATT	4 cut(s)	15, 134, 335, 644
TfiI	GAWTC	2 cut(s)	612, 623
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TscAI	CASTG	1 cut(s)	63
TseFI	GTSAC	1 cut(s)	87
TseI	GCWGC	2 cut(s)	389, 844
Tsp45I	GTSAC	1 cut(s)	87
TspDTI	ATGAA	5 cut(s)	304, 427, 719, 824, 864
TspGWI	ACGGA	1 cut(s)	415
TspRI	CASTG	1 cut(s)	63
XapI	RAATTY	2 cut(s)	335, 644
XcmI	CCANNNNNNNNNTGG	2 cut(s)	271, 471
XhoI	CTCGAG	1 cut(s)	482
XmiI	GTMKAC	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.