Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001385

Physical Location & Seq

Genomic Coordinates Forward (+)

12045961 .. 12046320

Gene Structure 360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG144700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCAGATCCTCTGATATTGTTCTGTGCTCTTCTTCTGTTCTCAATACCAGTTTCATCTCAGGTCAATGAGCTCTTCTTTCGTGGTTTTAAACATGTGGGCACTAACCTAACCTTTACAGGGATAGCAGAGTTTGAAAATCTTGGCATTCTCAAATTGACCAATGACACTAGCAGATTATTGGGTAGTCATGCTTTTTACACTTTCCCAATTCGATTAAAAAACTCCACAAATGGCAAAGCCTTCTCTTTCTCCACCTCATTTGCTTTCACTATAGTTCCTGAGTATCCAAAGCTCGGTGGCCATGGCGTTGCTTTCACAATGGCCCCATTGAAGGATATCAATTCTCTGCATGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

119

Amino Acids

13.06

Weight (kDa)

8.89

Isoelectric Point (pI)

14.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	26 - 114	1.1e-19	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55550
fragaria_vesca	FvH4_6g13180 FvH4_7g22900
malus_domestica	MD01G1137300.v1.1 MD01G1137400.v1.1 MD01G1137500.v1.1 MD01G1137600.v1.1 MD01G1137700.v1.1 MD04G1133700.v1.1 MD04G1133800.v1.1 MD12G1147700.v1.1
prunus_persica	Prupe.2G238700_v2.0.a1
pyrus_communis	pycom01g15830 pycom01g15860 pycom01g15870 pycom01g15880 pycom04g12170 pycom12g14140
rosa_chinensis	RchiOBHm_Chr1g0368061 RchiOBHm_Chr3g0465661 RchiOBHm_Chr3g0465671 RchiOBHm_Chr3g0465791 RchiOBHm_Chr4g0404141
rosa_laevigata	RLG00000024618 RLG00000024629 RLG00000024630 RLG00000027242
rosa_multiflora	Rmu_sc0000550.1_g000019 Rmu_sc0005103.1_g000004 Rmu_sc0007705.1_g000006 Rmu_sc0007705.1_g000016 Rmu_sc0007705.1_g000021 Rmu_sc0013273.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288890 Rroxscaffold_6G00414940
rosa_rugosa	Rorug01G0338700 Rorug03G0078100 Rorug03G0078200
rosa_samantha	Rh1AG345700 Rh1BG308000 Rh1CG323600 Rh1DG340100 Rh3BG143600 Rh3CG144600 Rh3CG144700 Rh3CG144800 Rh3CG145700 Rh3DG144900 Rh4AG123100 Rh4BG116200
rosa_wichuraiana	Rw1G030770 Rw3G011660 Rw3G011700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	2
AcoI	YGGCCR	1 cut(s)	301
AfiI	CCNNNNNNNGG	3 cut(s)	120, 296, 334
AflIII	ACRYGT	1 cut(s)	94
AgsI	TTSAA	2 cut(s)	137, 334
AluBI	AGCT	2 cut(s)	73, 295
AluI	AGCT	2 cut(s)	73, 295
Alw21I	GWGCWC	2 cut(s)	31, 75
AlwI	GGATC	1 cut(s)	2
AoxI	GGCC	2 cut(s)	301, 324
AspS9I	GGNCC	1 cut(s)	325
BaeGI	GKGCMC	1 cut(s)	104
BalI	TGGCCA	1 cut(s)	303
BanII	GRGCYC	1 cut(s)	75
Bbv12I	GWGCWC	2 cut(s)	31, 75
BciVI	GTATCC	1 cut(s)	297
BfaI	CTAG	2 cut(s)	171, 358
BfmI	CTRYAG	1 cut(s)	273
BfuI	GTATCC	1 cut(s)	297
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 296, 334
Bse1I	ACTGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	304
BseLI	CCNNNNNNNGG	3 cut(s)	120, 296, 334
BseMII	CTCAG	2 cut(s)	74, 273
BseNI	ACTGG	1 cut(s)	50
BseSI	GKGCMC	1 cut(s)	104
BshFI	GGCC	2 cut(s)	303, 326
BsiHKAI	GWGCWC	2 cut(s)	31, 75
BslI	CCNNNNNNNGG	3 cut(s)	120, 296, 334
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	2 cut(s)	303, 326
Bsp1286I	GDGCHC	3 cut(s)	31, 75, 104
Bsp143I	GATC	1 cut(s)	7
Bsp19I	CCATGG	1 cut(s)	304
BspANI	GGCC	2 cut(s)	303, 326
BspCNI	CTCAG	2 cut(s)	73, 274
BspLI	GGNNCC	1 cut(s)	327
BspPI	GGATC	1 cut(s)	2
BspQI	GCTCTTC	2 cut(s)	36, 80
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	1 cut(s)	7
BssT1I	CCWWGG	1 cut(s)	304
Bst6I	CTCTTC	2 cut(s)	36, 80
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	2 cut(s)	60, 282
BstDSI	CCRYGG	1 cut(s)	304
BstKTI	GATC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	7
BstNSI	RCATGY	2 cut(s)	98, 356
BstSFI	CTRYAG	1 cut(s)	273
BstSLI	GKGCMC	1 cut(s)	104
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuI	GTATCC	1 cut(s)	297
BsuRI	GGCC	2 cut(s)	303, 326
BtgI	CCRYGG	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	354
Cfr13I	GGNCC	1 cut(s)	325
CspCI	CAANNNNNGTGG	2 cut(s)	244, 279
CviAII	CATG	4 cut(s)	95, 191, 305, 353
CviJI	RGCY	5 cut(s)	73, 242, 295, 303, 326
CviKI_1	RGCY	5 cut(s)	73, 242, 295, 303, 326
DdeI	CTNAG	2 cut(s)	60, 282
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
DraI	TTTAAA	1 cut(s)	91
EaeI	YGGCCR	1 cut(s)	301
Eam1104I	CTCTTC	2 cut(s)	36, 80
EarI	CTCTTC	2 cut(s)	36, 80
Ecl136II	GAGCTC	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	304
Eco24I	GRGCYC	1 cut(s)	75
Eco32I	GATATC	1 cut(s)	340
Eco53kI	GAGCTC	1 cut(s)	73
EcoICRI	GAGCTC	1 cut(s)	73
EcoRV	GATATC	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	4 cut(s)	98, 194, 308, 356
FaiI	YATR	5 cut(s)	96, 192, 275, 306, 354
FatI	CATG	4 cut(s)	94, 190, 304, 352
FriOI	GRGCYC	1 cut(s)	75
FspBI	CTAG	2 cut(s)	171, 358
HaeIII	GGCC	2 cut(s)	303, 326
Hin1II	CATG	4 cut(s)	98, 194, 308, 356
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	1 cut(s)	281
HpyAV	CCTTC	2 cut(s)	253, 328
HpyCH4V	TGCA	1 cut(s)	352
HpyF3I	CTNAG	2 cut(s)	60, 282
Hsp92II	CATG	4 cut(s)	98, 194, 308, 356
Kzo9I	GATC	1 cut(s)	7
LguI	GCTCTTC	2 cut(s)	36, 80
LpnPI	CCDG	4 cut(s)	47, 63, 105, 294
MaeI	CTAG	2 cut(s)	171, 358
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	3 cut(s)	23, 26, 67
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	3 cut(s)	31, 75, 104
MlsI	TGGCCA	1 cut(s)	303
MluCI	AATT	3 cut(s)	155, 210, 343
MluNI	TGGCCA	1 cut(s)	303
MnlI	CCTC	2 cut(s)	21, 268
Mox20I	TGGCCA	1 cut(s)	303
MscI	TGGCCA	1 cut(s)	303
MseI	TTAA	2 cut(s)	90, 218
Msp20I	TGGCCA	1 cut(s)	303
Mva1269I	GAATGC	1 cut(s)	147
NcoI	CCATGG	1 cut(s)	304
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	4 cut(s)	98, 194, 308, 356
NlaIV	GGNNCC	1 cut(s)	327
NspI	RCATGY	2 cut(s)	98, 356
PaeI	GCATGC	1 cut(s)	356
PciI	ACATGT	1 cut(s)	94
PciSI	GCTCTTC	2 cut(s)	36, 80
PctI	GAATGC	1 cut(s)	147
PscI	ACATGT	1 cut(s)	94
Psp124BI	GAGCTC	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	327
PspPI	GGNCC	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	7
SacI	GAGCTC	1 cut(s)	75
SapI	GCTCTTC	2 cut(s)	36, 80
SaqAI	TTAA	2 cut(s)	90, 218
Sau3AI	GATC	1 cut(s)	7
Sau96I	GGNCC	1 cut(s)	325
SduI	GDGCHC	3 cut(s)	31, 75, 104
SetI	ASST	6 cut(s)	66, 75, 111, 116, 260, 297
SfcI	CTRYAG	1 cut(s)	273
SphI	GCATGC	1 cut(s)	356
Sse9I	AATT	3 cut(s)	155, 210, 343
SspMI	CTAG	2 cut(s)	171, 358
SstI	GAGCTC	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	304
TaqI	TCGA	1 cut(s)	214
TasI	AATT	3 cut(s)	155, 210, 343
Tru1I	TTAA	2 cut(s)	90, 218
Tru9I	TTAA	2 cut(s)	90, 218
TspDTI	ATGAA	1 cut(s)	45
XceI	RCATGY	2 cut(s)	98, 356
XspI	CTAG	2 cut(s)	171, 358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.