Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000444

Physical Location & Seq

Genomic Coordinates Reverse (-)

45672945 .. 45676079

Gene Structure 3135 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0338700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGTCATTCGTAGTAACCTCATCCTCCATACTCACCTCTTCTTATTTTAACAAACACAGCGTTTCTAAGTTAAGATCTTCTTGTGAGAATGCTTCTAAAGTTTCATACTTTCCCTTTATTCAATGTAAGTATCCATCTGGCATTACTGAGAATATCCATACAGGGTTGAGAAGGAAACCAAATGGTATTTCAATGTCCACTGTGATCAATTGCACAAAACCCAATTTTCAATCCTTCACTGATGAGGACACAGTTTTTCTTGATTTGGGTGATCAAGGAAATGAAGATGGTGAAGATATAGATTCACCCTGGGAAGGGGCTGTTATTTACAAGAGAAACGCTTCGATAACACATGTTGAGTACTGTACAACATTGGAGAGGCTTGGCTTGGGAAACCTTTCTACAGAGGTCTCCAAATCTAGGGCTTCGGTGATGGGGTTACGGGTCACTAAAGCTGTGAAAGATTATCCAAATGGCACACCAGTTCAGATCTCCATTGACATCACAAGGAGGAAGCAGAAGTTGAGGCTTGATGGGATCATCAAAACTGTTATCACATTGACTTGCAACAGGTGTGGTGACCCAGCAGCTGAGTCCATCTTCTCCAACTTCTCACTTCTCCTAACTGATGAACCTGTAGAAGAACCTGATATCATCAACATGGGAGTGATATATGGAGACAAGGTTAAAACTCATACTGGATTTGGTGACCAAGGGGAGGAAGATGATGACGACTCAATTGATTTTGAGGATCAGCTGTATTTCCGCCCTGAGGACAAACAAATAGACATTTCAAAGCACATAAGAGACTCGGTACATCTGGAGATTACTATCTCTGCAACATGTAATCCAAATTGCAAGGGTCTGTGTCTCAATTGTGGTAAAAATTTGAACACTAGCAATTGTATTTGTGGCAAAGAGGAGGTAAAGAAGACTACTTTTGGACCTCTTGGAAATTTAAAGAAGCAAATGCAGCGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

327

Amino Acids

36.34

Weight (kDa)

5.77

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YceD	PF02620	177 - 321	2.8e-21	Large ribosomal RNA subunit accumulation protein YceD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca	FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica	MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica	Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis	pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis	RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata	RLG00000001022 RLG00000020718
rosa_multiflora	Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa	Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha	Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana	Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	766
AclWI	GGATC	2 cut(s)	545, 759
AcsI	RAATTY	2 cut(s)	886, 955
AfaI	GTAC	3 cut(s)	362, 367, 816
AfiI	CCNNNNNNNGG	5 cut(s)	314, 315, 420, 718, 772
AflIII	ACRYGT	2 cut(s)	352, 842
AgsI	TTSAA	5 cut(s)	122, 192, 230, 795, 892
AjnI	CCWGG	1 cut(s)	308
AjuI	GAANNNNNNNTTGG	2 cut(s)	172, 204
AluBI	AGCT	3 cut(s)	455, 590, 757
AluI	AGCT	3 cut(s)	455, 590, 757
Alw26I	GTCTC	4 cut(s)	415, 672, 801, 875
AlwI	GGATC	2 cut(s)	545, 759
AlwNI	CAGNNNCTG	1 cut(s)	590
ApeKI	GCWGC	2 cut(s)	587, 973
ApoI	RAATTY	2 cut(s)	886, 955
Asp700I	GAANNNNTTC	2 cut(s)	340, 397
AspS9I	GGNCC	1 cut(s)	944
AsuHPI	GGTGA	7 cut(s)	25, 281, 297, 302, 442, 590, 719
AvaII	GGWCC	1 cut(s)	944
AxyI	CCTNAGG	1 cut(s)	771
BbsI	GAAGAC	1 cut(s)	938
BbvI	GCAGC	1 cut(s)	599
BccI	CCATC	5 cut(s)	142, 281, 427, 527, 605
BciT130I	CCWGG	1 cut(s)	310
BciVI	GTATCC	1 cut(s)	141
BclI	TGATCA	2 cut(s)	204, 271
BcoDI	GTCTC	4 cut(s)	415, 672, 801, 875
BfaI	CTAG	2 cut(s)	420, 897
BfmI	CTRYAG	2 cut(s)	402, 636
BfuI	GTATCC	1 cut(s)	141
BglII	AGATCT	2 cut(s)	74, 489
BisI	GCNGC	2 cut(s)	588, 974
BlsI	GCNGC	2 cut(s)	589, 975
BmcAI	AGTACT	1 cut(s)	362
Bme1390I	CCNGG	1 cut(s)	310
Bme18I	GGWCC	1 cut(s)	944
BmgT120I	GGNCC	1 cut(s)	944
BmrFI	CCNGG	1 cut(s)	310
BpiI	GAAGAC	1 cut(s)	938
BpmI	CTGGAG	1 cut(s)	842
BsaBI	GATNNNNATC	1 cut(s)	830
BsaI	GGTCTC	1 cut(s)	415
BsaJI	CCNNGG	3 cut(s)	308, 309, 712
BsaXI	ACNNNNNCTCC	2 cut(s)	669, 699
Bsc4I	CCNNNNNNNGG	5 cut(s)	314, 315, 420, 718, 772
Bse1I	ACTGG	2 cut(s)	482, 703
Bse21I	CCTNAGG	1 cut(s)	771
Bse8I	GATNNNNATC	1 cut(s)	830
BseBI	CCWGG	1 cut(s)	310
BseDI	CCNNGG	3 cut(s)	308, 309, 712
BseGI	GGATG	1 cut(s)	20
BseJI	GATNNNNATC	1 cut(s)	830
BseLI	CCNNNNNNNGG	5 cut(s)	314, 315, 420, 718, 772
BseMII	CTCAG	3 cut(s)	138, 582, 762
BseNI	ACTGG	2 cut(s)	482, 703
BseRI	GAGGAG	1 cut(s)	935
BseXI	GCAGC	1 cut(s)	599
BseYI	CCCAGC	1 cut(s)	583
BslI	CCNNNNNNNGG	5 cut(s)	314, 315, 420, 718, 772
BsmAI	GTCTC	4 cut(s)	415, 672, 801, 875
BsmI	GAATGC	1 cut(s)	94
Bso31I	GGTCTC	1 cut(s)	415
Bsp1407I	TGTACA	1 cut(s)	365
Bsp143I	GATC	6 cut(s)	74, 204, 271, 489, 537, 751
BspACI	CCGC	1 cut(s)	766
BspCNI	CTCAG	3 cut(s)	139, 583, 763
BspPI	GGATC	2 cut(s)	545, 759
BspTNI	GGTCTC	1 cut(s)	415
BsrGI	TGTACA	1 cut(s)	365
BsrI	ACTGG	2 cut(s)	482, 703
BssECI	CCNNGG	3 cut(s)	308, 309, 712
BssMI	GATC	6 cut(s)	74, 204, 271, 489, 537, 751
BssT1I	CCWWGG	1 cut(s)	712
Bst2UI	CCWGG	1 cut(s)	310
Bst4CI	ACNGT	4 cut(s)	202, 253, 365, 550
Bst6I	CTCTTC	1 cut(s)	43
BstAUI	TGTACA	1 cut(s)	365
BstDEI	CTNAG	4 cut(s)	66, 147, 591, 771
BstEII	GGTNACC	2 cut(s)	578, 707
BstF5I	GGATG	1 cut(s)	20
BstKTI	GATC	6 cut(s)	77, 207, 274, 492, 540, 754
BstMAI	GTCTC	4 cut(s)	415, 672, 801, 875
BstMBI	GATC	6 cut(s)	74, 204, 271, 489, 537, 751
BstMWI	GCNNNNNNNGC	1 cut(s)	973
BstNI	CCWGG	1 cut(s)	310
BstNSI	RCATGY	2 cut(s)	356, 846
BstPI	GGTNACC	2 cut(s)	578, 707
BstSCI	CCNGG	1 cut(s)	308
BstSFI	CTRYAG	2 cut(s)	402, 636
BstV1I	GCAGC	1 cut(s)	599
BstV2I	GAAGAC	1 cut(s)	938
BstX2I	RGATCY	2 cut(s)	74, 489
BstYI	RGATCY	2 cut(s)	74, 489
Bsu36I	CCTNAGG	1 cut(s)	771
BsuI	GTATCC	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	20
BtsIMutI	CAGTG	2 cut(s)	198, 237
CaiI	CAGNNNCTG	1 cut(s)	590
Cfr13I	GGNCC	1 cut(s)	944
Csp6I	GTAC	3 cut(s)	361, 366, 815
CspCI	CAANNNNNGTGG	2 cut(s)	556, 591
CviAII	CATG	3 cut(s)	353, 661, 843
CviJI	RGCY	8 cut(s)	320, 382, 387, 425, 455, 529, 590, 757
CviKI_1	RGCY	8 cut(s)	320, 382, 387, 425, 455, 529, 590, 757
CviQI	GTAC	3 cut(s)	361, 366, 815
DdeI	CTNAG	4 cut(s)	66, 147, 591, 771
DpnI	GATC	6 cut(s)	76, 206, 273, 491, 539, 753
DpnII	GATC	6 cut(s)	74, 204, 271, 489, 537, 751
DraI	TTTAAA	1 cut(s)	960
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
EciI	GGCGGA	1 cut(s)	755
Eco130I	CCWWGG	1 cut(s)	712
Eco31I	GGTCTC	1 cut(s)	415
Eco32I	GATATC	1 cut(s)	652
Eco47I	GGWCC	1 cut(s)	944
Eco81I	CCTNAGG	1 cut(s)	771
Eco91I	GGTNACC	2 cut(s)	578, 707
EcoO65I	GGTNACC	2 cut(s)	578, 707
EcoRII	CCWGG	1 cut(s)	308
EcoRV	GATATC	1 cut(s)	652
EcoT14I	CCWWGG	1 cut(s)	712
ErhI	CCWWGG	1 cut(s)	712
FaeI	CATG	3 cut(s)	356, 664, 846
FalI	AAGNNNNNCTT	2 cut(s)	64, 96
FatI	CATG	3 cut(s)	352, 660, 842
FbaI	TGATCA	2 cut(s)	204, 271
Fnu4HI	GCNGC	2 cut(s)	588, 974
FokI	GGATG	1 cut(s)	7
Fsp4HI	GCNGC	2 cut(s)	588, 974
FspBI	CTAG	2 cut(s)	420, 897
GluI	GCNGC	2 cut(s)	588, 974
GsaI	CCCAGC	1 cut(s)	587
GsuI	CTGGAG	1 cut(s)	842
Hin1II	CATG	3 cut(s)	356, 664, 846
HinfI	GANTC	4 cut(s)	302, 593, 734, 809
HphI	GGTGA	7 cut(s)	25, 281, 297, 302, 442, 590, 719
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	1 cut(s)	489
Hpy188III	TCNNGA	2 cut(s)	260, 821
Hpy8I	GTNNAC	1 cut(s)	198
HpyAV	CCTTC	3 cut(s)	165, 244, 308
HpyCH4III	ACNGT	4 cut(s)	202, 253, 365, 550
HpyCH4V	TGCA	5 cut(s)	213, 567, 839, 858, 973
HpyF10VI	GCNNNNNNNGC	1 cut(s)	973
HpyF3I	CTNAG	4 cut(s)	66, 147, 591, 771
Hsp92II	CATG	3 cut(s)	356, 664, 846
Ksp22I	TGATCA	2 cut(s)	204, 271
Kzo9I	GATC	6 cut(s)	74, 204, 271, 489, 537, 751
Lsp1109I	GCAGC	1 cut(s)	599
MaeI	CTAG	2 cut(s)	420, 897
MaeIII	GTNAC	5 cut(s)	13, 438, 445, 578, 707
MalI	GATC	6 cut(s)	76, 206, 273, 491, 539, 753
MboI	GATC	6 cut(s)	74, 204, 271, 489, 537, 751
MboII	GAAGA	8 cut(s)	30, 69, 296, 305, 592, 653, 734, 943
MfeI	CAATTG	4 cut(s)	208, 738, 874, 901
MflI	RGATCY	2 cut(s)	74, 489
MluCI	AATT	8 cut(s)	208, 223, 738, 853, 874, 886, 901, 955
MlyI	GAGTC	3 cut(s)	602, 728, 803
MmeI	TCCRAC	1 cut(s)	630
MroXI	GAANNNNTTC	2 cut(s)	340, 397
MseI	TTAA	4 cut(s)	48, 71, 687, 959
MslI	CAYNNNNRTG	2 cut(s)	659, 665
MspA1I	CMGCKG	2 cut(s)	590, 757
MspR9I	CCNGG	1 cut(s)	310
MunI	CAATTG	4 cut(s)	208, 738, 874, 901
Mva1269I	GAATGC	1 cut(s)	94
MvaI	CCWGG	1 cut(s)	310
MwoI	GCNNNNNNNGC	1 cut(s)	973
NdeII	GATC	6 cut(s)	74, 204, 271, 489, 537, 751
NlaIII	CATG	3 cut(s)	356, 664, 846
NmuCI	GTSAC	3 cut(s)	445, 578, 707
NspI	RCATGY	2 cut(s)	356, 846
PasI	CCCWGGG	1 cut(s)	309
PciI	ACATGT	2 cut(s)	352, 842
PctI	GAATGC	1 cut(s)	94
PdmI	GAANNNNTTC	2 cut(s)	340, 397
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	2 cut(s)	589, 975
PleI	GAGTC	3 cut(s)	601, 728, 803
PpsI	GAGTC	3 cut(s)	601, 728, 803
PscI	ACATGT	2 cut(s)	352, 842
Psp6I	CCWGG	1 cut(s)	308
PspEI	GGTNACC	2 cut(s)	578, 707
PspFI	CCCAGC	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	308
PspPI	GGNCC	1 cut(s)	944
PstNI	CAGNNNCTG	1 cut(s)	590
PsuI	RGATCY	2 cut(s)	74, 489
PvuII	CAGCTG	2 cut(s)	590, 757
RsaI	GTAC	3 cut(s)	362, 367, 816
RsaNI	GTAC	3 cut(s)	361, 366, 815
RseI	CAYNNNNRTG	2 cut(s)	659, 665
SaqAI	TTAA	4 cut(s)	48, 71, 687, 959
SatI	GCNGC	2 cut(s)	588, 974
Sau3AI	GATC	6 cut(s)	74, 204, 271, 489, 537, 751
Sau96I	GGNCC	1 cut(s)	944
ScaI	AGTACT	1 cut(s)	362
SchI	GAGTC	3 cut(s)	602, 728, 803
ScrFI	CCNGG	1 cut(s)	310
SfcI	CTRYAG	2 cut(s)	402, 636
SinI	GGWCC	1 cut(s)	944
SmiMI	CAYNNNNRTG	2 cut(s)	659, 665
Sse9I	AATT	8 cut(s)	208, 223, 738, 853, 874, 886, 901, 955
SsiI	CCGC	1 cut(s)	766
SspMI	CTAG	2 cut(s)	420, 897
StyD4I	CCNGG	1 cut(s)	308
StyI	CCWWGG	1 cut(s)	712
TaaI	ACNGT	4 cut(s)	202, 253, 365, 550
TaqI	TCGA	1 cut(s)	344
TasI	AATT	8 cut(s)	208, 223, 738, 853, 874, 886, 901, 955
TatI	WGTACW	2 cut(s)	360, 365
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	4 cut(s)	48, 71, 687, 959
Tru9I	TTAA	4 cut(s)	48, 71, 687, 959
TscAI	CASTG	2 cut(s)	205, 244
TseFI	GTSAC	3 cut(s)	445, 578, 707
TseI	GCWGC	2 cut(s)	587, 973
Tsp45I	GTSAC	3 cut(s)	445, 578, 707
TspDTI	ATGAA	3 cut(s)	93, 297, 645
TspRI	CASTG	2 cut(s)	205, 244
VpaK11BI	GGWCC	1 cut(s)	944
XapI	RAATTY	2 cut(s)	886, 955
XceI	RCATGY	2 cut(s)	356, 846
XmnI	GAANNNNTTC	2 cut(s)	340, 397
XspI	CTAG	2 cut(s)	420, 897
ZrmI	AGTACT	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.