Rh7AG451700

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000444
Physical Location & Seq
Forward (+)
61826806 .. 61827456
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG451700.1

Sequence Viewer

Length: 651 bp
ATGATGCGGAGGTATACTTTTGGAAATGACATTGTGAAGCTGGGAGTAACTCGGTTTGCTACAGACTTTATGACTTTGAAACAAATGGCTGACCTTAAATTTAATTTGCAGACTATGGTTACTTCAAAAGAATGGGAAGGCTGCCCTTATTCTTTTGCATCAGAAGGATCAGCAATGCTGGATGTATTAAGTAATCACACATTTTGGTCTTCATGCATTATGTTTACTCGATTAACAAATCCACTCTTGCAAATTTTGAGAATTGTTGGTAGCCAGAAGGAGGCAGCAATGGGATATGTATTTGGAGGAATGTATCGAGCAAAAGAAACAATCAAGAGAGAACTTGTCAAGAAAGAAGAATATATGGCTTACTGGAATATTATGGATTACAGGTGGCAAAAATTGTGGGATCATCCTCTTCATGCTGCTGGTTTTTACCTTAATCCCAAGTTTTTCTATAGCATCAAGGGAGAAATGTACAAGGTGATTATGTCAAAGATGCTTGACTGCATGGAGAAATTGGTTCCAGATTTAAAAGTTCAAGATGAGATTAGCAAAGAGATAAACTTGTACAAAAATGCTGTTGGAGATCTGGGGAGGAATTTGGCCATTAGAGCCAGAGACACTCTGCTTCCCTGTGAGGATCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

216

Amino Acids

25.23

Weight (kDa)

8.76

Isoelectric Point (pI)

38.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 14
AciI CCGC 1 cut(s) 7
AclWI GGATC 2 cut(s) 175, 417
AcoI YGGCCR 1 cut(s) 606
AcsI RAATTY 3 cut(s) 98, 252, 601
AfaI GTAC 2 cut(s) 479, 572
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 3 cut(s) 79, 126, 542
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
Alw26I GTCTC 1 cut(s) 615
AlwI GGATC 2 cut(s) 175, 417
AoxI GGCC 1 cut(s) 606
ApeKI GCWGC 3 cut(s) 141, 284, 425
ApoI RAATTY 3 cut(s) 98, 252, 601
AsuHPI GGTGA 1 cut(s) 496
BalI TGGCCA 1 cut(s) 608
BbsI GAAGAC 1 cut(s) 201
BbvI GCAGC 3 cut(s) 128, 296, 412
BcoDI GTCTC 1 cut(s) 615
BfaI CTAG 1 cut(s) 649
BfmI CTRYAG 2 cut(s) 60, 457
BglII AGATCT 1 cut(s) 589
BisI GCNGC 3 cut(s) 142, 285, 426
BlsI GCNGC 3 cut(s) 143, 286, 427
BmiI GGNNCC 1 cut(s) 525
BmsI GCATC 3 cut(s) 167, 471, 489
BpiI GAAGAC 1 cut(s) 201
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse1I ACTGG 1 cut(s) 377
Bse3DI GCAATG 2 cut(s) 180, 294
BseGI GGATG 2 cut(s) 187, 412
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMI GCAATG 2 cut(s) 180, 294
BseNI ACTGG 1 cut(s) 377
BseXI GCAGC 3 cut(s) 128, 296, 412
BseYI CCCAGC 1 cut(s) 40
BshFI GGCC 1 cut(s) 608
BslI CCNNNNNNNGG 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 615
BsnI GGCC 1 cut(s) 608
Bsp1407I TGTACA 2 cut(s) 477, 570
Bsp143I GATC 4 cut(s) 167, 409, 589, 643
BspACI CCGC 1 cut(s) 7
BspANI GGCC 1 cut(s) 608
BspLI GGNNCC 1 cut(s) 525
BspPI GGATC 2 cut(s) 175, 417
BsrDI GCAATG 2 cut(s) 180, 294
BsrGI TGTACA 2 cut(s) 477, 570
BsrI ACTGG 1 cut(s) 377
BssMI GATC 4 cut(s) 167, 409, 589, 643
BssNAI GTATAC 1 cut(s) 15
Bst1107I GTATAC 1 cut(s) 15
Bst6I CTCTTC 1 cut(s) 423
BstAUI TGTACA 2 cut(s) 477, 570
BstF5I GGATG 2 cut(s) 187, 412
BstKTI GATC 4 cut(s) 170, 412, 592, 646
BstMAI GTCTC 1 cut(s) 615
BstMBI GATC 4 cut(s) 167, 409, 589, 643
BstMWI GCNNNNNNNGC 1 cut(s) 614
BstSFI CTRYAG 2 cut(s) 60, 457
BstV1I GCAGC 3 cut(s) 128, 296, 412
BstV2I GAAGAC 1 cut(s) 201
BstX2I RGATCY 2 cut(s) 589, 643
BstYI RGATCY 2 cut(s) 589, 643
BstZ17I GTATAC 1 cut(s) 15
BsuRI GGCC 1 cut(s) 608
BtsCI GGATG 2 cut(s) 187, 412
Csp6I GTAC 2 cut(s) 478, 571
CspCI CAANNNNNGTGG 2 cut(s) 386, 421
CviAII CATG 3 cut(s) 213, 422, 511
CviJI RGCY 7 cut(s) 40, 89, 141, 273, 368, 608, 617
CviKI_1 RGCY 7 cut(s) 40, 89, 141, 273, 368, 608, 617
CviQI GTAC 2 cut(s) 478, 571
DpnI GATC 4 cut(s) 169, 411, 591, 645
DpnII GATC 4 cut(s) 167, 409, 589, 643
DraI TTTAAA 1 cut(s) 534
EaeI YGGCCR 1 cut(s) 606
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
EcoT22I ATGCAT 1 cut(s) 218
FaeI CATG 3 cut(s) 216, 425, 514
FatI CATG 3 cut(s) 212, 421, 510
FblI GTMKAC 1 cut(s) 14
Fnu4HI GCNGC 3 cut(s) 142, 285, 426
FokI GGATG 2 cut(s) 194, 399
Fsp4HI GCNGC 3 cut(s) 142, 285, 426
FspBI CTAG 1 cut(s) 649
GluI GCNGC 3 cut(s) 142, 285, 426
GsaI CCCAGC 1 cut(s) 44
HaeIII GGCC 1 cut(s) 608
Hin1II CATG 3 cut(s) 216, 425, 514
HphI GGTGA 1 cut(s) 496
Hpy166II GTNNAC 2 cut(s) 15, 225
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 4 cut(s) 334, 349, 527, 542
Hpy8I GTNNAC 2 cut(s) 15, 225
HpyAV CCTTC 3 cut(s) 131, 158, 271
HpyCH4V TGCA 5 cut(s) 109, 158, 216, 250, 510
HpyF10VI GCNNNNNNNGC 1 cut(s) 614
Hsp92II CATG 3 cut(s) 216, 425, 514
Kzo9I GATC 4 cut(s) 167, 409, 589, 643
LpnPI CCDG 9 cut(s) 26, 164, 287, 358, 376, 414, 540, 578, 631
Lsp1109I GCAGC 3 cut(s) 128, 296, 412
LweI GCATC 3 cut(s) 167, 471, 489
MaeI CTAG 1 cut(s) 649
MaeIII GTNAC 2 cut(s) 46, 118
MalI GATC 4 cut(s) 169, 411, 591, 645
MboI GATC 4 cut(s) 167, 409, 589, 643
MboII GAAGA 3 cut(s) 201, 368, 410
MflI RGATCY 2 cut(s) 589, 643
MlsI TGGCCA 1 cut(s) 608
MluCI AATT 7 cut(s) 98, 103, 252, 261, 401, 518, 601
MluNI TGGCCA 1 cut(s) 608
MmeI TCCRAC 1 cut(s) 565
MnlI CCTC 6 cut(s) 3, 274, 299, 426, 591, 634
Mox20I TGGCCA 1 cut(s) 608
Mph1103I ATGCAT 1 cut(s) 218
MscI TGGCCA 1 cut(s) 608
MseI TTAA 6 cut(s) 96, 102, 188, 233, 441, 533
Msp20I TGGCCA 1 cut(s) 608
MwoI GCNNNNNNNGC 1 cut(s) 614
NdeII GATC 4 cut(s) 167, 409, 589, 643
NlaIII CATG 3 cut(s) 216, 425, 514
NlaIV GGNNCC 1 cut(s) 525
NsiI ATGCAT 1 cut(s) 218
PkrI GCNGC 3 cut(s) 143, 286, 427
PspFI CCCAGC 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 525
PsuI RGATCY 2 cut(s) 589, 643
RsaI GTAC 2 cut(s) 479, 572
RsaNI GTAC 2 cut(s) 478, 571
SaqAI TTAA 6 cut(s) 96, 102, 188, 233, 441, 533
SatI GCNGC 3 cut(s) 142, 285, 426
Sau3AI GATC 4 cut(s) 167, 409, 589, 643
SetI ASST 6 cut(s) 14, 42, 96, 395, 441, 486
SfaNI GCATC 3 cut(s) 167, 471, 489
SfcI CTRYAG 2 cut(s) 60, 457
Sse9I AATT 7 cut(s) 98, 103, 252, 261, 401, 518, 601
SsiI CCGC 1 cut(s) 7
SspI AATATT 1 cut(s) 379
SspMI CTAG 1 cut(s) 649
TaqI TCGA 2 cut(s) 229, 316
TasI AATT 7 cut(s) 98, 103, 252, 261, 401, 518, 601
TatI WGTACW 2 cut(s) 477, 570
Tru1I TTAA 6 cut(s) 96, 102, 188, 233, 441, 533
Tru9I TTAA 6 cut(s) 96, 102, 188, 233, 441, 533
TseI GCWGC 3 cut(s) 141, 284, 425
TspDTI ATGAA 2 cut(s) 201, 410
XapI RAATTY 3 cut(s) 98, 252, 601
XmiI GTMKAC 1 cut(s) 14
XspI CTAG 1 cut(s) 649
Zsp2I ATGCAT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.