Rh7AG459200

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000444
Physical Location & Seq
Reverse (-)
63178440 .. 63178712
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG459200.1

Sequence Viewer

Length: 273 bp
ATGTTGCAGTGCTTAGATGAAAAAATTGCATCTTTTAGGCACAGAAAGAGTCAAATGGGTGCGAACCCGAGTCGTAGTTTTAGTGAACTAGACAATGTGTTTGCTGAAAATGAAGTTGGAGGGCCCAATTTGATGAATCAAGAGGAAGGTGTGGGAATGAGTGTTGATAATGGGATTAGGGTTGGTGATAATCTGACTGATGTGCCTCTTGAGATTGATGATTTTTTTAGGAGTGATGGTATAGAGGGATTACTACTGTGCCTCTTGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

90

Amino Acids

9.95

Weight (kDa)

4.27

Isoelectric Point (pI)

50.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AjuI GAANNNNNNNTTGG 2 cut(s) 99, 131
Ama87I CYCGRG 1 cut(s) 67
AoxI GGCC 1 cut(s) 122
ApaI GGGCCC 1 cut(s) 126
ArsI GACNNNNNNTTYG 2 cut(s) 83, 115
AspS9I GGNCC 2 cut(s) 122, 123
AsuHPI GGTGA 1 cut(s) 197
AvaI CYCGRG 1 cut(s) 67
BaeGI GKGCMC 1 cut(s) 126
BanII GRGCYC 1 cut(s) 126
BccI CCATC 1 cut(s) 230
BfaI CTAG 1 cut(s) 89
BmeT110I CYCGRG 1 cut(s) 67
BmgT120I GGNCC 2 cut(s) 122, 123
BmiI GGNNCC 1 cut(s) 124
BmsI GCATC 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 230
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
BseSI GKGCMC 1 cut(s) 126
BshFI GGCC 1 cut(s) 124
BsiHKCI CYCGRG 1 cut(s) 67
BsnI GGCC 1 cut(s) 124
BsoBI CYCGRG 1 cut(s) 67
Bsp120I GGGCCC 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 126
BspANI GGCC 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 258
BstDEI CTNAG 1 cut(s) 13
BstSLI GKGCMC 1 cut(s) 126
BsuRI GGCC 1 cut(s) 124
BtsI GCAGTG 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 14
Cfr13I GGNCC 2 cut(s) 122, 123
CviJI RGCY 1 cut(s) 124
CviKI_1 RGCY 1 cut(s) 124
DdeI CTNAG 1 cut(s) 13
Eco24I GRGCYC 1 cut(s) 126
Eco88I CYCGRG 1 cut(s) 67
EcoO109I RGGNCCY 1 cut(s) 122
EcoT38I GRGCYC 1 cut(s) 126
FaiI YATR 1 cut(s) 242
FriOI GRGCYC 1 cut(s) 126
FspBI CTAG 1 cut(s) 89
HaeIII GGCC 1 cut(s) 124
HinfI GANTC 3 cut(s) 49, 70, 136
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 195
Hpy188III TCNNGA 2 cut(s) 140, 209
Hpy8I GTNNAC 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 140
HpyCH4III ACNGT 1 cut(s) 258
HpyCH4V TGCA 3 cut(s) 7, 29, 268
HpyF3I CTNAG 1 cut(s) 13
LweI GCATC 1 cut(s) 38
MaeI CTAG 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 126
MluCI AATT 2 cut(s) 24, 127
MlyI GAGTC 2 cut(s) 58, 79
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 5 cut(s) 113, 136, 216, 238, 272
NlaIV GGNNCC 1 cut(s) 124
PfeI GAWTC 1 cut(s) 136
PleI GAGTC 2 cut(s) 57, 78
PpsI GAGTC 2 cut(s) 57, 78
PspN4I GGNNCC 1 cut(s) 124
PspOMI GGGCCC 1 cut(s) 122
PspPI GGNCC 2 cut(s) 122, 123
Sau96I GGNCC 2 cut(s) 122, 123
SchI GAGTC 2 cut(s) 58, 79
SduI GDGCHC 1 cut(s) 126
SetI ASST 1 cut(s) 151
SfaNI GCATC 1 cut(s) 38
SgeI CNNG 5 cut(s) 79, 81, 101, 152, 221
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 2 cut(s) 24, 127
SspMI CTAG 1 cut(s) 89
TaaI ACNGT 1 cut(s) 258
TasI AATT 2 cut(s) 24, 127
TfiI GAWTC 1 cut(s) 136
TscAI CASTG 1 cut(s) 14
TspDTI ATGAA 3 cut(s) 33, 126, 149
TspRI CASTG 1 cut(s) 14
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.