Rh7BG423400

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000444
Physical Location & Seq
Forward (+)
48220160 .. 48221192
1033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG423400.1

Sequence Viewer

Length: 534 bp
ATGACATCTTTGGAGGGTTTTGAGCCCATAGCTATTTCCCCACAGAAACAAGACCCAGGATGGAAACACTGTCAAATCTACACTCAAACTGGGGACCCAAAAGTTGAGTTAAAGAAGTGTTTATATTGTGGCAAAGTGTTTCAGGGTGGAGGGATTAATAGGTTTAAATCTCACCTTGCTGGTAGAAAAGGAAATGGTCCCATTTGTGATCAGGTCCCTCCTGATGAAAACACGCAAGGAAGATCAGTTGGTAATCCCAATTCAGATTTGTTTGAAAATGAAGCAGAAGTTGGCACAAGTAATACAAACGGGAAAAACAGGAAGAGGGTAAGAGATGAAAATGGATCAATGGCTGCCAATGCTGGCACTGTTGGCAGTAATGGTGAAGTTGAAAAACGGTTTCTATATGAAATTCAGGCTCCTCTGGATGCCGTGAAGAACTCTGTTTATTTTCAGCCAATGATTGATGCAATTGCTTCTGGGGGAATGGAGAGTAAACTACCCTCGTATCATGATCTTCGGGGTAGGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

177

Amino Acids

19.3

Weight (kDa)

7.65

Isoelectric Point (pI)

20.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 352
AcsI RAATTY 1 cut(s) 411
AgsI TTSAA 2 cut(s) 275, 392
AjnI CCWGG 1 cut(s) 55
AjuI GAANNNNNNNTTGG 2 cut(s) 273, 305
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
AlwI GGATC 1 cut(s) 352
ApeKI GCWGC 1 cut(s) 353
ApoI RAATTY 1 cut(s) 411
AseI ATTAAT 1 cut(s) 156
AspS9I GGNCC 3 cut(s) 94, 197, 214
AsuHPI GGTGA 2 cut(s) 164, 395
AvaII GGWCC 3 cut(s) 94, 197, 214
BaeI ACNNNNGTAYC 2 cut(s) 491, 524
BanII GRGCYC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 340
BccI CCATC 1 cut(s) 54
BceAI ACGGC 1 cut(s) 416
BciT130I CCWGG 1 cut(s) 57
BclI TGATCA 1 cut(s) 208
BisI GCNGC 1 cut(s) 354
BlsI GCNGC 1 cut(s) 355
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 3 cut(s) 94, 197, 214
BmgT120I GGNCC 3 cut(s) 94, 197, 214
BmiI GGNNCC 5 cut(s) 95, 96, 199, 216, 420
BmrFI CCNGG 1 cut(s) 57
BmrI ACTGGG 1 cut(s) 99
BmsI GCATC 2 cut(s) 418, 457
BmuI ACTGGG 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 94
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 2 cut(s) 65, 433
BseNI ACTGG 1 cut(s) 94
BseRI GAGGAG 1 cut(s) 411
BseXI GCAGC 1 cut(s) 340
BslFI GGGAC 3 cut(s) 107, 183, 200
BsmFI GGGAC 3 cut(s) 107, 183, 200
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 4 cut(s) 208, 242, 344, 514
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 5 cut(s) 95, 96, 199, 216, 420
BspPI GGATC 1 cut(s) 352
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 4 cut(s) 208, 242, 344, 514
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 3 cut(s) 71, 370, 399
Bst6I CTCTTC 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 364
BstF5I GGATG 2 cut(s) 65, 433
BstKTI GATC 4 cut(s) 211, 245, 347, 517
BstMBI GATC 4 cut(s) 208, 242, 344, 514
BstMWI GCNNNNNNNGC 2 cut(s) 359, 372
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 340
BtsCI GGATG 2 cut(s) 65, 433
BtsIMutI CAGTG 2 cut(s) 67, 366
Cac8I GCNNGC 1 cut(s) 364
CciI TCATGA 1 cut(s) 511
Cfr13I GGNCC 3 cut(s) 94, 197, 214
CviAII CATG 1 cut(s) 512
CviJI RGCY 5 cut(s) 25, 32, 353, 419, 457
CviKI_1 RGCY 5 cut(s) 25, 32, 353, 419, 457
DpnI GATC 4 cut(s) 210, 244, 346, 516
DpnII GATC 4 cut(s) 208, 242, 344, 514
DraI TTTAAA 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
Eco24I GRGCYC 1 cut(s) 27
Eco47I GGWCC 3 cut(s) 94, 197, 214
EcoO109I RGGNCCY 2 cut(s) 94, 214
EcoRII CCWGG 1 cut(s) 55
EcoT38I GRGCYC 1 cut(s) 27
FaeI CATG 1 cut(s) 515
FaiI YATR 6 cut(s) 29, 124, 406, 408, 513, 532
FaqI GGGAC 3 cut(s) 107, 183, 200
FatI CATG 1 cut(s) 511
FbaI TGATCA 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 354
FokI GGATG 2 cut(s) 72, 440
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 354
GluI GCNGC 1 cut(s) 354
Hin1II CATG 1 cut(s) 515
HphI GGTGA 2 cut(s) 164, 395
Hpy166II GTNNAC 1 cut(s) 497
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 3 cut(s) 221, 425, 512
Hpy8I GTNNAC 1 cut(s) 497
HpyCH4III ACNGT 3 cut(s) 71, 370, 399
HpyCH4V TGCA 1 cut(s) 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 372
Hsp92II CATG 1 cut(s) 515
KflI GGGWCCC 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 4 cut(s) 208, 242, 344, 514
LmnI GCTCC 1 cut(s) 424
Lsp1109I GCAGC 1 cut(s) 340
LweI GCATC 2 cut(s) 418, 457
MalI GATC 4 cut(s) 210, 244, 346, 516
MboI GATC 4 cut(s) 208, 242, 344, 514
MboII GAAGA 4 cut(s) 252, 334, 448, 509
MfeI CAATTG 1 cut(s) 471
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 3 cut(s) 259, 411, 471
MnlI CCTC 6 cut(s) 7, 143, 228, 318, 432, 514
MseI TTAA 3 cut(s) 110, 156, 165
MspR9I CCNGG 1 cut(s) 57
MunI CAATTG 1 cut(s) 471
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 359, 372
NdeII GATC 4 cut(s) 208, 242, 344, 514
NlaIII CATG 1 cut(s) 515
NlaIV GGNNCC 5 cut(s) 95, 96, 199, 216, 420
PagI TCATGA 1 cut(s) 511
PkrI GCNGC 1 cut(s) 355
PpuMI RGGWCCY 2 cut(s) 94, 214
PshBI ATTAAT 1 cut(s) 156
Psp5II RGGWCCY 2 cut(s) 94, 214
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 5 cut(s) 95, 96, 199, 216, 420
PspPI GGNCC 3 cut(s) 94, 197, 214
PspPPI RGGWCCY 2 cut(s) 94, 214
SaqAI TTAA 3 cut(s) 110, 156, 165
SatI GCNGC 1 cut(s) 354
Sau3AI GATC 4 cut(s) 208, 242, 344, 514
Sau96I GGNCC 3 cut(s) 94, 197, 214
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 1 cut(s) 27
SetI ASST 4 cut(s) 34, 164, 177, 216
SfaNI GCATC 2 cut(s) 418, 457
SinI GGWCC 3 cut(s) 94, 197, 214
Sse9I AATT 3 cut(s) 259, 411, 471
StyD4I CCNGG 1 cut(s) 55
TaaI ACNGT 3 cut(s) 71, 370, 399
TasI AATT 3 cut(s) 259, 411, 471
Tru1I TTAA 3 cut(s) 110, 156, 165
Tru9I TTAA 3 cut(s) 110, 156, 165
TscAI CASTG 2 cut(s) 74, 373
TseI GCWGC 1 cut(s) 353
TspDTI ATGAA 4 cut(s) 240, 294, 351, 423
TspRI CASTG 2 cut(s) 74, 373
VpaK11BI GGWCC 3 cut(s) 94, 197, 214
VspI ATTAAT 1 cut(s) 156
XapI RAATTY 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.