MD09G1138100.v1.1

Protein of unknown function (DUF 659)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
10739253 .. 10739621
369 bp
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UTR
Exon/CDS
Intron
MD09G1138100.v1.1.491

Sequence Viewer

Length: 171 bp
ATGGAGATGCACCAAGAAGACACTGAAAATCCTGATTGGATGTCACTTGATCCCCCCTCTGAGAACTCGAGGCTTTTAGAACTTTCGGTTGATGAAGTTGAAGAATTGGGTTCAGGGTTTGATGACAATGAAATTTTGAGCGGATTGAAAGTGGTTAAAGAAGAATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

57

Amino Acids

6.37

Weight (kDa)

4.05

Isoelectric Point (pI)

74.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 141
AciI CCGC 1 cut(s) 141
AclWI GGATC 1 cut(s) 44
AcsI RAATTY 1 cut(s) 132
AgsI TTSAA 2 cut(s) 101, 148
AlwI GGATC 1 cut(s) 44
Ama87I CYCGRG 1 cut(s) 67
ApoI RAATTY 1 cut(s) 132
AvaI CYCGRG 1 cut(s) 67
BbsI GAAGAC 1 cut(s) 24
BmeT110I CYCGRG 1 cut(s) 67
BpiI GAAGAC 1 cut(s) 24
BseGI GGATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 67
BsoBI CYCGRG 1 cut(s) 67
Bsp143I GATC 1 cut(s) 49
BspACI CCGC 1 cut(s) 141
BspCNI CTCAG 1 cut(s) 52
BspPI GGATC 1 cut(s) 44
BsrBI CCGCTC 1 cut(s) 141
BssMI GATC 1 cut(s) 49
BstDEI CTNAG 1 cut(s) 60
BstF5I GGATG 1 cut(s) 45
BstKTI GATC 1 cut(s) 52
BstMBI GATC 1 cut(s) 49
BstV2I GAAGAC 1 cut(s) 24
BtsCI GGATG 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 21
CviJI RGCY 1 cut(s) 73
CviKI_1 RGCY 1 cut(s) 73
DdeI CTNAG 1 cut(s) 60
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
Eco88I CYCGRG 1 cut(s) 67
FokI GGATG 1 cut(s) 52
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 1 cut(s) 32
HpyCH4V TGCA 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 60
Kzo9I GATC 1 cut(s) 49
LpnPI CCDG 2 cut(s) 45, 99
MaeIII GTNAC 1 cut(s) 42
MalI GATC 1 cut(s) 51
MbiI CCGCTC 1 cut(s) 141
MboI GATC 1 cut(s) 49
MboII GAAGA 2 cut(s) 29, 113
MluCI AATT 2 cut(s) 104, 132
MnlI CCTC 2 cut(s) 63, 67
MseI TTAA 2 cut(s) 156, 169
NdeII GATC 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 42
PaeR7I CTCGAG 1 cut(s) 67
PspXI VCTCGAGB 1 cut(s) 67
SaqAI TTAA 2 cut(s) 156, 169
Sau3AI GATC 1 cut(s) 49
Sfr274I CTCGAG 1 cut(s) 67
SgeI CNNG 6 cut(s) 26, 44, 59, 79, 81, 126
SlaI CTCGAG 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
Sse9I AATT 2 cut(s) 104, 132
SsiI CCGC 1 cut(s) 141
TaqI TCGA 1 cut(s) 68
TasI AATT 2 cut(s) 104, 132
Tru1I TTAA 2 cut(s) 156, 169
Tru9I TTAA 2 cut(s) 156, 169
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 42
Tsp45I GTSAC 1 cut(s) 42
TspDTI ATGAA 2 cut(s) 108, 144
TspRI CASTG 1 cut(s) 28
XapI RAATTY 1 cut(s) 132
XhoI CTCGAG 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.