Rorug07G0273200

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000444
Physical Location & Seq
Reverse (-)
25920932 .. 25923667
2736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0273200.1

Sequence Viewer

Length: 501 bp
ATGGAATTGCAACTGGGTTTTCAACACAATAGAGCTTCCCAACATCTGAAGCTTTCAATAAGCTTTATGCTCTCATTCCGTGAAAACAAATTGGCGGTTTTGACAAGAGTATTAGCCAAGGCTTGTGGTGGTGCACATTGGGTAAAAGTGCCTGTATATACAGCAGGGACTGACACCAAACCTTCACAAATAGCTAGGCAAGGTTTAGAGGGGGCCAAAAAGAAGAACATAGATGTAGTAATAATGGATACTGCTGGAAGGCTTCAGATAGACAAAGTACTGATAGATGAGTTGAAAGAAGTAAAGCGGGAATTGAACCCCATAGAAACTTTACTCGTTGTGGATGCAATGACTGGCCAGGAAGCTGCAACCCTGGTCACAACATTCAATGTAGAGATTGGGATTGCTGGCACTATTTTAACAAAGCTGGATGGAGATTCTAGAGGTGTAAAGCAAGGACAGCAGCTGCAGTCAAAGTTCCAGAGTTTCAATTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

166

Amino Acids

18.29

Weight (kDa)

9.44

Isoelectric Point (pI)

37.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP54 PF00448 46 - 149 1.5e-32 SRP54-type protein, GTPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 95, 307
AcoI YGGCCR 1 cut(s) 355
AcuI CTGAAG 2 cut(s) 68, 248
AfaI GTAC 1 cut(s) 279
AgsI TTSAA 6 cut(s) 23, 57, 295, 316, 388, 490
AjnI CCWGG 2 cut(s) 357, 372
AluBI AGCT 7 cut(s) 35, 52, 63, 194, 365, 427, 466
AluI AGCT 7 cut(s) 35, 52, 63, 194, 365, 427, 466
Alw21I GWGCWC 1 cut(s) 136
Alw44I GTGCAC 1 cut(s) 132
AlwNI CAGNNNCTG 2 cut(s) 170, 466
AoxI GGCC 2 cut(s) 213, 355
ApaLI GTGCAC 1 cut(s) 132
ApeKI GCWGC 3 cut(s) 365, 463, 466
AspS9I GGNCC 1 cut(s) 213
BaeGI GKGCMC 1 cut(s) 136
BalI TGGCCA 1 cut(s) 357
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 3 cut(s) 352, 453, 475
BccI CCATC 1 cut(s) 425
BciT130I CCWGG 2 cut(s) 359, 374
BciVI GTATCC 1 cut(s) 241
BfaI CTAG 2 cut(s) 195, 441
BfmI CTRYAG 1 cut(s) 467
BfuI GTATCC 1 cut(s) 241
BisI GCNGC 3 cut(s) 366, 464, 467
BlsI GCNGC 3 cut(s) 367, 465, 468
BmcAI AGTACT 1 cut(s) 279
Bme1390I CCNGG 2 cut(s) 359, 374
BmgT120I GGNCC 1 cut(s) 213
BmiI GGNNCC 1 cut(s) 214
BmrFI CCNGG 2 cut(s) 359, 374
BmrI ACTGGG 1 cut(s) 23
BmsI GCATC 1 cut(s) 334
BmuI ACTGGG 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 117, 372
Bse1I ACTGG 2 cut(s) 18, 358
Bse3DI GCAATG 1 cut(s) 354
BseBI CCWGG 2 cut(s) 359, 374
BseDI CCNNGG 2 cut(s) 117, 372
BseGI GGATG 2 cut(s) 349, 436
BseMI GCAATG 1 cut(s) 354
BseNI ACTGG 2 cut(s) 18, 358
BseSI GKGCMC 1 cut(s) 136
BseXI GCAGC 3 cut(s) 352, 453, 475
BshFI GGCC 2 cut(s) 215, 357
BsiHKAI GWGCWC 1 cut(s) 136
BslFI GGGAC 1 cut(s) 181
BsmFI GGGAC 1 cut(s) 181
BsnI GGCC 2 cut(s) 215, 357
Bsp1286I GDGCHC 1 cut(s) 136
BspACI CCGC 2 cut(s) 95, 307
BspANI GGCC 2 cut(s) 215, 357
BspLI GGNNCC 1 cut(s) 214
BspMAI CTGCAG 1 cut(s) 471
BsrDI GCAATG 1 cut(s) 354
BsrI ACTGG 2 cut(s) 18, 358
BssECI CCNNGG 2 cut(s) 117, 372
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 2 cut(s) 359, 374
BstC8I GCNNGC 1 cut(s) 409
BstF5I GGATG 2 cut(s) 349, 436
BstMWI GCNNNNNNNGC 1 cut(s) 460
BstNI CCWGG 2 cut(s) 359, 374
BstSCI CCNGG 2 cut(s) 357, 372
BstSFI CTRYAG 1 cut(s) 467
BstSLI GKGCMC 1 cut(s) 136
BstV1I GCAGC 3 cut(s) 352, 453, 475
BsuI GTATCC 1 cut(s) 241
BsuRI GGCC 2 cut(s) 215, 357
BtsCI GGATG 2 cut(s) 349, 436
Cac8I GCNNGC 1 cut(s) 409
CaiI CAGNNNCTG 2 cut(s) 170, 466
Cfr13I GGNCC 1 cut(s) 213
Csp6I GTAC 1 cut(s) 278
CspCI CAANNNNNGTGG 2 cut(s) 106, 141
CviQI GTAC 1 cut(s) 278
EaeI YGGCCR 1 cut(s) 355
Eco130I CCWWGG 1 cut(s) 117
Eco57I CTGAAG 2 cut(s) 68, 248
EcoRII CCWGG 2 cut(s) 357, 372
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaiI YATR 5 cut(s) 68, 157, 159, 230, 323
FaqI GGGAC 1 cut(s) 181
FauI CCCGC 1 cut(s) 300
Fnu4HI GCNGC 3 cut(s) 366, 464, 467
FokI GGATG 2 cut(s) 356, 443
Fsp4HI GCNGC 3 cut(s) 366, 464, 467
FspBI CTAG 2 cut(s) 195, 441
GluI GCNGC 3 cut(s) 366, 464, 467
HaeIII GGCC 2 cut(s) 215, 357
HindIII AAGCTT 2 cut(s) 50, 61
HinfI GANTC 1 cut(s) 437
Hpy166II GTNNAC 1 cut(s) 134
Hpy188I TCNGA 2 cut(s) 48, 267
Hpy188III TCNNGA 2 cut(s) 441, 481
Hpy8I GTNNAC 1 cut(s) 134
HpyAV CCTTC 2 cut(s) 192, 252
HpyCH4V TGCA 5 cut(s) 10, 134, 347, 368, 469
HpyF10VI GCNNNNNNNGC 1 cut(s) 460
Lsp1109I GCAGC 3 cut(s) 352, 453, 475
LweI GCATC 1 cut(s) 334
MaeI CTAG 2 cut(s) 195, 441
MaeIII GTNAC 1 cut(s) 376
MboII GAAGA 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 136
MlsI TGGCCA 1 cut(s) 357
MluCI AATT 4 cut(s) 5, 89, 311, 490
MluNI TGGCCA 1 cut(s) 357
MnlI CCTC 3 cut(s) 202, 437, 489
Mox20I TGGCCA 1 cut(s) 357
MscI TGGCCA 1 cut(s) 357
MseI TTAA 1 cut(s) 419
Msp20I TGGCCA 1 cut(s) 357
MspA1I CMGCKG 1 cut(s) 466
MspR9I CCNGG 2 cut(s) 359, 374
MvaI CCWGG 2 cut(s) 359, 374
MwoI GCNNNNNNNGC 1 cut(s) 460
NlaIV GGNNCC 1 cut(s) 214
NmuCI GTSAC 1 cut(s) 376
PfeI GAWTC 1 cut(s) 437
PkrI GCNGC 3 cut(s) 367, 465, 468
Psp6I CCWGG 2 cut(s) 357, 372
PspGI CCWGG 2 cut(s) 357, 372
PspN4I GGNNCC 1 cut(s) 214
PspPI GGNCC 1 cut(s) 213
PstI CTGCAG 1 cut(s) 471
PstNI CAGNNNCTG 2 cut(s) 170, 466
PvuII CAGCTG 1 cut(s) 466
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
SaqAI TTAA 1 cut(s) 419
SatI GCNGC 3 cut(s) 366, 464, 467
Sau96I GGNCC 1 cut(s) 213
ScaI AGTACT 1 cut(s) 279
ScrFI CCNGG 2 cut(s) 359, 374
SduI GDGCHC 1 cut(s) 136
SfaNI GCATC 1 cut(s) 334
SfcI CTRYAG 1 cut(s) 467
Sse9I AATT 4 cut(s) 5, 89, 311, 490
SsiI CCGC 2 cut(s) 95, 307
SspMI CTAG 2 cut(s) 195, 441
StyD4I CCNGG 2 cut(s) 357, 372
StyI CCWWGG 1 cut(s) 117
TasI AATT 4 cut(s) 5, 89, 311, 490
TatI WGTACW 1 cut(s) 277
TfiI GAWTC 1 cut(s) 437
Tru1I TTAA 1 cut(s) 419
Tru9I TTAA 1 cut(s) 419
TseFI GTSAC 1 cut(s) 376
TseI GCWGC 3 cut(s) 365, 463, 466
Tsp45I GTSAC 1 cut(s) 376
TspGWI ACGGA 1 cut(s) 68
VneI GTGCAC 1 cut(s) 132
XbaI TCTAGA 1 cut(s) 440
XspI CTAG 2 cut(s) 195, 441
ZrmI AGTACT 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.