Rroxscaffold_1G00016080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000444
Physical Location & Seq
Reverse (-)
20045557 .. 20046968
1412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00016080.1

Sequence Viewer

Length: 177 bp
ATGAATTTCTGGGTTTTTAGTTTAAGTCTCAAGCTCGTGGTCAACTGGTCTTACTCTTGGACTCTTGGTTCGATTCAAAAATCTTCAAGCTTGGATGTTCATGAGGAGGATTTTGAGTTTGAGTCCGATACGGAGGGAGTACTAGAGGGATATGGGGAAGAAGAATTTGAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

58

Amino Acids

6.79

Weight (kDa)

4.05

Isoelectric Point (pI)

23.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 4, 164
AfaI GTAC 1 cut(s) 141
AgsI TTSAA 2 cut(s) 77, 87
AloI GAACNNNNNNTCC 2 cut(s) 52, 84
AluBI AGCT 2 cut(s) 34, 90
AluI AGCT 2 cut(s) 34, 90
Alw26I GTCTC 1 cut(s) 32
ApoI RAATTY 2 cut(s) 4, 164
ArsI GACNNNNNNTTYG 2 cut(s) 52, 84
BauI CACGAG 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 1 cut(s) 143
BmcAI AGTACT 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 50
BseGI GGATG 1 cut(s) 100
BseNI ACTGG 1 cut(s) 50
BseRI GAGGAG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 32
BspHI TCATGA 1 cut(s) 100
BsrI ACTGG 1 cut(s) 50
BssSI CACGAG 1 cut(s) 35
Bst2BI CACGAG 1 cut(s) 35
BstF5I GGATG 1 cut(s) 100
BstMAI GTCTC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 100
CciI TCATGA 1 cut(s) 100
Csp6I GTAC 1 cut(s) 140
CviAII CATG 1 cut(s) 101
CviJI RGCY 2 cut(s) 34, 90
CviKI_1 RGCY 2 cut(s) 34, 90
CviQI GTAC 1 cut(s) 140
FaeI CATG 1 cut(s) 104
FaiI YATR 2 cut(s) 102, 153
FatI CATG 1 cut(s) 100
FokI GGATG 1 cut(s) 107
FspBI CTAG 1 cut(s) 143
Hin1II CATG 1 cut(s) 104
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HindIII AAGCTT 1 cut(s) 88
HinfI GANTC 3 cut(s) 61, 73, 122
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 1 cut(s) 101
Hpy8I GTNNAC 1 cut(s) 43
Hsp92II CATG 1 cut(s) 104
LpnPI CCDG 1 cut(s) 31
MaeI CTAG 1 cut(s) 143
MboII GAAGA 3 cut(s) 75, 170, 173
MluCI AATT 2 cut(s) 4, 164
MlyI GAGTC 2 cut(s) 55, 131
MnlI CCTC 4 cut(s) 97, 100, 127, 139
MseI TTAA 1 cut(s) 23
NlaIII CATG 1 cut(s) 104
PagI TCATGA 1 cut(s) 100
PfeI GAWTC 1 cut(s) 73
PleI GAGTC 2 cut(s) 55, 130
PpsI GAGTC 2 cut(s) 55, 130
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
SaqAI TTAA 1 cut(s) 23
ScaI AGTACT 1 cut(s) 141
SchI GAGTC 2 cut(s) 55, 131
SetI ASST 2 cut(s) 36, 92
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 2 cut(s) 4, 164
SspMI CTAG 1 cut(s) 143
TaqI TCGA 1 cut(s) 71
TasI AATT 2 cut(s) 4, 164
TatI WGTACW 1 cut(s) 139
TfiI GAWTC 1 cut(s) 73
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TspDTI ATGAA 2 cut(s) 17, 89
TspGWI ACGGA 1 cut(s) 146
XapI RAATTY 2 cut(s) 4, 164
XspI CTAG 1 cut(s) 143
ZrmI AGTACT 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.