Rorug01G0338600

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000444
Physical Location & Seq
Forward (+)
45672044 .. 45672602
559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0338600.1

Sequence Viewer

Length: 270 bp
ATGGGAAAATTGGAGAGCAGAAGCTACTCGGTGGAGTGGTGCTCTAACTGGCCCTGGAAATTTGGCCCTAACTGTGTGGAGAGGGTATACGTACATCGGCCAGTTGGGCAGCCACCACTGTTCGGAGAGGTTGTGTTCCGATCAGTACTCATGCCGGCGCTGGTCCTTCAGGGCAAGGATTTGCAAAAGTATCTGGTAGATGGTTATCCGATATGGTGCAAAAAATATGACAGAAAGAAGGCTCAGCAAAGTAGACAATTAGAACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

89

Amino Acids

10.47

Weight (kDa)

9.44

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 87, 253
AcoI YGGCCR 1 cut(s) 98
AcsI RAATTY 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 152
AfaI GTAC 2 cut(s) 93, 147
AfiI CCNNNNNNNGG 1 cut(s) 122
AjnI CCWGG 1 cut(s) 53
AluBI AGCT 1 cut(s) 24
AluI AGCT 1 cut(s) 24
Alw21I GWGCWC 1 cut(s) 44
AoxI GGCC 3 cut(s) 50, 64, 98
ApeKI GCWGC 1 cut(s) 109
ApoI RAATTY 1 cut(s) 59
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 3 cut(s) 51, 65, 163
AvaII GGWCC 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 121
BccI CCATC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 55
BfoI RGCGCY 1 cut(s) 161
BglI GCCNNNNNGGC 1 cut(s) 106
BisI GCNGC 1 cut(s) 110
BlpI GCTNAGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 111
BmcAI AGTACT 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 3 cut(s) 51, 65, 163
BmrFI CCNGG 1 cut(s) 55
BplI GAGNNNNNCTC 2 cut(s) 26, 58
Bpu1102I GCTNAGC 1 cut(s) 243
BsaAI YACGTR 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 53
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse118I RCCGGY 1 cut(s) 154
Bse1I ACTGG 2 cut(s) 53, 101
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 53
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 2 cut(s) 53, 101
BseXI GCAGC 1 cut(s) 121
BshFI GGCC 3 cut(s) 52, 66, 100
BsiHKAI GWGCWC 1 cut(s) 44
BsiSI CCGG 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 122
BsnI GGCC 3 cut(s) 52, 66, 100
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 1 cut(s) 140
Bsp1720I GCTNAGC 1 cut(s) 243
BspANI GGCC 3 cut(s) 52, 66, 100
BspCNI CTCAG 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 154
BsrI ACTGG 2 cut(s) 53, 101
BssAI RCCGGY 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 53
BssMI GATC 1 cut(s) 140
BssNAI GTATAC 1 cut(s) 88
Bst1107I GTATAC 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 55
Bst4CI ACNGT 2 cut(s) 74, 120
BstBAI YACGTR 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 2 cut(s) 243, 267
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 1 cut(s) 143
BstMBI GATC 1 cut(s) 140
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstNI CCWGG 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 53
BstSNI TACGTA 1 cut(s) 91
BstV1I GCAGC 1 cut(s) 121
BstZ17I GTATAC 1 cut(s) 88
BsuRI GGCC 3 cut(s) 52, 66, 100
BtsIMutI CAGTG 1 cut(s) 116
Cac8I GCNNGC 1 cut(s) 156
CfoI GCGC 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 3 cut(s) 51, 65, 163
Csp6I GTAC 2 cut(s) 92, 146
CviAII CATG 1 cut(s) 151
CviJI RGCY 6 cut(s) 24, 52, 66, 100, 112, 242
CviKI_1 RGCY 6 cut(s) 24, 52, 66, 100, 112, 242
CviQI GTAC 2 cut(s) 92, 146
DdeI CTNAG 2 cut(s) 243, 267
DpnI GATC 1 cut(s) 142
DpnII GATC 1 cut(s) 140
EaeI YGGCCR 1 cut(s) 98
Eco105I TACGTA 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 53
FaeI CATG 1 cut(s) 154
FaiI YATR 4 cut(s) 88, 152, 214, 228
FatI CATG 1 cut(s) 150
FblI GTMKAC 2 cut(s) 87, 253
Fnu4HI GCNGC 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 110
GlaI GCGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 110
HaeII RGCGCY 1 cut(s) 161
HaeIII GGCC 3 cut(s) 52, 66, 100
HapII CCGG 1 cut(s) 155
HhaI GCGC 1 cut(s) 160
Hin1II CATG 1 cut(s) 154
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HpaII CCGG 1 cut(s) 155
Hpy166II GTNNAC 2 cut(s) 88, 254
Hpy188I TCNGA 3 cut(s) 125, 140, 210
Hpy8I GTNNAC 2 cut(s) 88, 254
HpyAV CCTTC 2 cut(s) 176, 232
HpyCH4III ACNGT 2 cut(s) 74, 120
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 2 cut(s) 184, 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
HpyF3I CTNAG 2 cut(s) 243, 267
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 1 cut(s) 154
HspAI GCGC 1 cut(s) 158
KroI GCCGGC 1 cut(s) 154
KroNI GCCGGC 1 cut(s) 156
Kzo9I GATC 1 cut(s) 140
LpnPI CCDG 8 cut(s) 34, 40, 67, 114, 146, 155, 168, 179
Lsp1109I GCAGC 1 cut(s) 121
MaeII ACGT 1 cut(s) 90
MalI GATC 1 cut(s) 142
MboI GATC 1 cut(s) 140
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 3 cut(s) 8, 59, 257
MnlI CCTC 2 cut(s) 75, 121
MroNI GCCGGC 1 cut(s) 154
MspI CCGG 1 cut(s) 155
MspR9I CCNGG 1 cut(s) 55
MvaI CCWGG 1 cut(s) 55
MwoI GCNNNNNNNGC 1 cut(s) 106
NaeI GCCGGC 1 cut(s) 156
NdeII GATC 1 cut(s) 140
NgoMIV GCCGGC 1 cut(s) 154
NlaIII CATG 1 cut(s) 154
PdiI GCCGGC 1 cut(s) 156
PkrI GCNGC 1 cut(s) 111
Ppu21I YACGTR 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 53
PspGI CCWGG 1 cut(s) 53
PspPI GGNCC 3 cut(s) 51, 65, 163
RsaI GTAC 2 cut(s) 93, 147
RsaNI GTAC 2 cut(s) 92, 146
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 1 cut(s) 140
Sau96I GGNCC 3 cut(s) 51, 65, 163
ScaI AGTACT 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 1 cut(s) 44
SetI ASST 4 cut(s) 26, 93, 132, 268
SinI GGWCC 1 cut(s) 163
SnaBI TACGTA 1 cut(s) 91
Sse9I AATT 3 cut(s) 8, 59, 257
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 2 cut(s) 74, 120
TaiI ACGT 1 cut(s) 93
TasI AATT 3 cut(s) 8, 59, 257
TatI WGTACW 1 cut(s) 145
TscAI CASTG 1 cut(s) 123
TseI GCWGC 1 cut(s) 109
TspRI CASTG 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 1 cut(s) 59
XmiI GTMKAC 2 cut(s) 87, 253
ZrmI AGTACT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.