Rorug04G0167900

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000444
Physical Location & Seq
Reverse (-)
29503614 .. 29504130
517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0167900.1

Sequence Viewer

Length: 387 bp
ATGTTCTTCCTCCGAGTCCACTCAGTGGACACCAACCACCCTATCAGCCTTGAAGACGTCGAGTTCACCAACATCTACGCCACCACCACCCAATCAAACCCTAAGTTCAGCCAGCTGAGAGGAATCGCGCACCTATTTCAAACACGAGGTAACTCGTCGCTGCAGAGCCACGCCGCCGAGTCCACTCTCCTCTTCGATGTCGCTGAGTCCACTCTCCTCTTCGATGCAGCGTTTGGGCATGATGACGCTGTCGATGTGGGACTGCAAGATTCCTTAGACTCAGATTGGTCTGATCGGAGAATTAGGCTCAGGTTTTCTGCTGGTGCTAGAGGTTGGCCTCCATACGATGGGCGATGTCGTTGGTGGTGGTATCACTGTAGGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

128

Amino Acids

14.67

Weight (kDa)

5.79

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 60
AccB7I CCANNNNNTGG 2 cut(s) 25, 347
AccII CGCG 1 cut(s) 128
AciI CCGC 1 cut(s) 174
AcyI GRCGYC 1 cut(s) 57
AdeI CACNNNGTG 1 cut(s) 25
AfiI CCNNNNNNNGG 2 cut(s) 25, 347
AgsI TTSAA 2 cut(s) 53, 140
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
AoxI GGCC 1 cut(s) 335
ApeKI GCWGC 2 cut(s) 160, 227
AspLEI GCGC 1 cut(s) 130
AsuHPI GGTGA 1 cut(s) 58
BauI CACGAG 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 60
BbvI GCAGC 2 cut(s) 147, 239
BccI CCATC 1 cut(s) 341
BfaI CTAG 1 cut(s) 327
BfmI CTRYAG 2 cut(s) 161, 376
BisI GCNGC 3 cut(s) 161, 174, 228
BlsI GCNGC 3 cut(s) 162, 175, 229
BmsI GCATC 1 cut(s) 214
BpiI GAAGAC 1 cut(s) 60
Bpu10I CCTNAGC 1 cut(s) 308
BsaHI GRCGYC 1 cut(s) 57
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 347
BseLI CCNNNNNNNGG 2 cut(s) 25, 347
BseMII CTCAG 5 cut(s) 36, 107, 195, 294, 322
BseRI GAGGAG 2 cut(s) 179, 206
BseXI GCAGC 2 cut(s) 147, 239
Bsh1236I CGCG 1 cut(s) 128
BshFI GGCC 1 cut(s) 337
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 2 cut(s) 25, 347
BsmFI GGGAC 1 cut(s) 273
BsnI GGCC 1 cut(s) 337
Bsp143I GATC 1 cut(s) 292
BspACI CCGC 1 cut(s) 174
BspANI GGCC 1 cut(s) 337
BspCNI CTCAG 5 cut(s) 35, 108, 196, 293, 321
BspFNI CGCG 1 cut(s) 128
BspMAI CTGCAG 1 cut(s) 165
BssMI GATC 1 cut(s) 292
BssNI GRCGYC 1 cut(s) 57
BssSI CACGAG 1 cut(s) 144
Bst2BI CACGAG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 377
Bst6I CTCTTC 2 cut(s) 197, 224
BstACI GRCGYC 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 7 cut(s) 22, 102, 116, 204, 274, 280, 308
BstFNI CGCG 1 cut(s) 128
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 1 cut(s) 295
BstMBI GATC 1 cut(s) 292
BstSFI CTRYAG 2 cut(s) 161, 376
BstUI CGCG 1 cut(s) 128
BstV1I GCAGC 2 cut(s) 147, 239
BstV2I GAAGAC 1 cut(s) 60
BsuRI GGCC 1 cut(s) 337
BtgZI GCGATG 1 cut(s) 367
BtsIMutI CAGTG 2 cut(s) 30, 373
Cac8I GCNNGC 1 cut(s) 113
CfoI GCGC 1 cut(s) 130
CseI GACGC 1 cut(s) 254
CviAII CATG 1 cut(s) 239
CviJI RGCY 6 cut(s) 48, 111, 115, 168, 307, 337
CviKI_1 RGCY 6 cut(s) 48, 111, 115, 168, 307, 337
DdeI CTNAG 7 cut(s) 22, 102, 116, 204, 274, 280, 308
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
DraIII CACNNNGTG 1 cut(s) 25
Eam1104I CTCTTC 2 cut(s) 197, 224
EarI CTCTTC 2 cut(s) 197, 224
FaeI CATG 1 cut(s) 242
FaiI YATR 2 cut(s) 240, 343
FaqI GGGAC 1 cut(s) 273
FatI CATG 1 cut(s) 238
Fnu4HI GCNGC 3 cut(s) 161, 174, 228
Fsp4HI GCNGC 3 cut(s) 161, 174, 228
FspBI CTAG 1 cut(s) 327
GlaI GCGC 1 cut(s) 129
GluI GCNGC 3 cut(s) 161, 174, 228
HaeIII GGCC 1 cut(s) 337
HgaI GACGC 1 cut(s) 254
HhaI GCGC 1 cut(s) 130
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 1 cut(s) 242
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HinfI GANTC 6 cut(s) 15, 123, 179, 206, 269, 278
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 5 cut(s) 19, 28, 66, 183, 210
Hpy188I TCNGA 4 cut(s) 14, 283, 292, 297
Hpy8I GTNNAC 5 cut(s) 19, 28, 66, 183, 210
Hpy99I CGWCG 2 cut(s) 62, 160
HpyCH4III ACNGT 1 cut(s) 377
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 3 cut(s) 163, 227, 265
HpyF3I CTNAG 7 cut(s) 22, 102, 116, 204, 274, 280, 308
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 1 cut(s) 242
HspAI GCGC 1 cut(s) 128
Kzo9I GATC 1 cut(s) 292
LpnPI CCDG 3 cut(s) 125, 295, 306
Lsp1109I GCAGC 2 cut(s) 147, 239
LweI GCATC 1 cut(s) 214
MaeI CTAG 1 cut(s) 327
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 149
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 3 cut(s) 65, 184, 211
MluCI AATT 1 cut(s) 300
MlyI GAGTC 4 cut(s) 24, 188, 215, 272
MnlI CCTC 7 cut(s) 20, 113, 140, 200, 227, 323, 348
MspA1I CMGCKG 1 cut(s) 115
MvnI CGCG 1 cut(s) 128
NdeII GATC 1 cut(s) 292
NlaIII CATG 1 cut(s) 242
NmeAIII GCCGAG 1 cut(s) 202
PfeI GAWTC 2 cut(s) 123, 269
PflFI GACNNNGTC 1 cut(s) 248
PflMI CCANNNNNTGG 2 cut(s) 25, 347
PkrI GCNGC 3 cut(s) 162, 175, 229
PleI GAGTC 4 cut(s) 23, 187, 214, 272
PpsI GAGTC 4 cut(s) 23, 187, 214, 272
PstI CTGCAG 1 cut(s) 165
PsyI GACNNNGTC 1 cut(s) 248
PvuII CAGCTG 1 cut(s) 115
SatI GCNGC 3 cut(s) 161, 174, 228
Sau3AI GATC 1 cut(s) 292
SchI GAGTC 4 cut(s) 24, 188, 215, 272
SetI ASST 6 cut(s) 60, 117, 135, 151, 314, 334
SfaNI GCATC 1 cut(s) 214
SfcI CTRYAG 2 cut(s) 161, 376
Sse9I AATT 1 cut(s) 300
SsiI CCGC 1 cut(s) 174
SspMI CTAG 1 cut(s) 327
TaaI ACNGT 1 cut(s) 377
TaiI ACGT 1 cut(s) 60
TaqI TCGA 4 cut(s) 60, 195, 222, 252
TasI AATT 1 cut(s) 300
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 2 cut(s) 123, 269
TscAI CASTG 2 cut(s) 30, 380
TseI GCWGC 2 cut(s) 160, 227
TspRI CASTG 2 cut(s) 30, 380
Tth111I GACNNNGTC 1 cut(s) 248
Van91I CCANNNNNTGG 2 cut(s) 25, 347
XspI CTAG 1 cut(s) 327
ZraI GACGTC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.