Rh1AG102700

Protein of unknown function (DUF 659)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
17937984 .. 17938594
611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG102700.1

Sequence Viewer

Length: 255 bp
ATGGTTTCTGTATTTGCTGGACTGTACAGCAGATATCTAAAGAAGCATATGGTTCATAAGAACAAAGAGCATGAGTATGTGGATCCTATATCATTTGACAACACTAGCATTGTTGAAGACTGGGTAACAGAGACCGAAATGTACCTAGAAGACAATGAAAATACTGATTGGAAGGCACTTGATCCACCCTCTTATAATTCGAGGCTTTTAGAACTTTCAGTTGATGAAGCTGAAGACTTGGGTTCTAGTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.79

Weight (kDa)

4.38

Isoelectric Point (pI)

31.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 195
AclWI GGATC 3 cut(s) 77, 90, 176
AcuI CTGAAG 1 cut(s) 252
AfaI GTAC 2 cut(s) 26, 143
AgsI TTSAA 1 cut(s) 116
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 3 cut(s) 77, 90, 176
BamHI GGATCC 1 cut(s) 82
BbsI GAAGAC 3 cut(s) 123, 156, 240
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 3 cut(s) 105, 146, 246
BmiI GGNNCC 1 cut(s) 84
BmrI ACTGGG 1 cut(s) 130
BmuI ACTGGG 1 cut(s) 130
BpiI GAAGAC 3 cut(s) 123, 156, 240
BsaI GGTCTC 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 125
Bso31I GGTCTC 1 cut(s) 125
Bsp1407I TGTACA 1 cut(s) 24
Bsp143I GATC 2 cut(s) 82, 181
BspLI GGNNCC 1 cut(s) 84
BspPI GGATC 3 cut(s) 77, 90, 176
BspTNI GGTCTC 1 cut(s) 125
BsrGI TGTACA 1 cut(s) 24
BsrI ACTGG 1 cut(s) 125
BssMI GATC 2 cut(s) 82, 181
Bst4CI ACNGT 1 cut(s) 24
BstAUI TGTACA 1 cut(s) 24
BstKTI GATC 2 cut(s) 85, 184
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 2 cut(s) 82, 181
BstV2I GAAGAC 3 cut(s) 123, 156, 240
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
Csp6I GTAC 2 cut(s) 25, 142
CviAII CATG 1 cut(s) 71
CviJI RGCY 2 cut(s) 205, 230
CviKI_1 RGCY 2 cut(s) 205, 230
CviQI GTAC 2 cut(s) 25, 142
DpnI GATC 2 cut(s) 84, 183
DpnII GATC 2 cut(s) 82, 181
Eco31I GGTCTC 1 cut(s) 125
Eco32I GATATC 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 252
EcoRV GATATC 1 cut(s) 35
FaeI CATG 1 cut(s) 74
FaiI YATR 7 cut(s) 48, 50, 57, 72, 78, 89, 195
FatI CATG 1 cut(s) 70
FauNDI CATATG 1 cut(s) 48
FspBI CTAG 3 cut(s) 105, 146, 246
Hin1II CATG 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 1 cut(s) 24
Hsp92II CATG 1 cut(s) 74
Kzo9I GATC 2 cut(s) 82, 181
LpnPI CCDG 2 cut(s) 3, 106
MaeI CTAG 3 cut(s) 105, 146, 246
MaeIII GTNAC 2 cut(s) 124, 248
MalI GATC 2 cut(s) 84, 183
MboI GATC 2 cut(s) 82, 181
MboII GAAGA 3 cut(s) 128, 161, 245
MflI RGATCY 1 cut(s) 82
MluCI AATT 1 cut(s) 196
MnlI CCTC 2 cut(s) 195, 199
MslI CAYNNNNRTG 1 cut(s) 75
NdeI CATATG 1 cut(s) 48
NdeII GATC 2 cut(s) 82, 181
NlaIII CATG 1 cut(s) 74
NlaIV GGNNCC 1 cut(s) 84
PsiI TTATAA 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 84
PsuI RGATCY 1 cut(s) 82
RsaI GTAC 2 cut(s) 26, 143
RsaNI GTAC 2 cut(s) 25, 142
RseI CAYNNNNRTG 1 cut(s) 75
Sau3AI GATC 2 cut(s) 82, 181
SetI ASST 2 cut(s) 147, 232
SgeI CNNG 8 cut(s) 30, 83, 117, 133, 158, 191, 213, 250
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 1 cut(s) 196
SspMI CTAG 3 cut(s) 105, 146, 246
TaaI ACNGT 1 cut(s) 24
TaqI TCGA 1 cut(s) 200
TaqII GACCGA 1 cut(s) 149
TasI AATT 1 cut(s) 196
TatI WGTACW 1 cut(s) 24
TspDTI ATGAA 3 cut(s) 44, 171, 240
XspI CTAG 3 cut(s) 105, 146, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.