pycom01g15840

Protein of unknown function (DUF 659)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
15580748 .. 15580963
216 bp
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UTR
Exon/CDS
Intron
pycom01g15840.1

Sequence Viewer

Length: 216 bp
ATGCATAGTGATATTGTCTCGGGTACGTTTGATTGCATCGAGAGATTGGTTCCTGATACAAATGTCCAAGATAAAATCATCGAAGAGCTAAATTTGTACAGGAGTGCTGCTGGAGATTTTTGGAGGAAGATGGCAATTAGGGCTAGAGACACTCTGCTTCCTGGTGAGGGACTAATCTTTTCGATTGTTTTGTTATTTCTAACTTCTGTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

72

Amino Acids

8.0

Weight (kDa)

4.83

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 91
AfaI GTAC 2 cut(s) 25, 98
AfiI CCNNNNNNNGG 1 cut(s) 167
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
Alw26I GTCTC 2 cut(s) 22, 141
Ama87I CYCGRG 1 cut(s) 19
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 19
BaeI ACNNNNGTAYC 2 cut(s) 48, 81
BbvI GCAGC 1 cut(s) 94
BccI CCATC 1 cut(s) 124
BciT130I CCWGG 1 cut(s) 162
BcoDI GTCTC 2 cut(s) 22, 141
BfaI CTAG 1 cut(s) 144
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 162
BmeT110I CYCGRG 1 cut(s) 19
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 167
BseBI CCWGG 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 94
BsiHKCI CYCGRG 1 cut(s) 19
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 2 cut(s) 22, 141
BsmFI GGGAC 1 cut(s) 183
BsoBI CYCGRG 1 cut(s) 19
Bsp1407I TGTACA 1 cut(s) 96
BspHI TCATGA 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 51
BspQI GCTCTTC 1 cut(s) 78
BsrGI TGTACA 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 162
Bst6I CTCTTC 1 cut(s) 78
BstAUI TGTACA 1 cut(s) 96
BstMAI GTCTC 2 cut(s) 22, 141
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 94
CciI TCATGA 1 cut(s) 212
Csp6I GTAC 2 cut(s) 24, 97
CviAII CATG 1 cut(s) 213
CviJI RGCY 2 cut(s) 88, 143
CviKI_1 RGCY 2 cut(s) 88, 143
CviQI GTAC 2 cut(s) 24, 97
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco88I CYCGRG 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 160
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 216
FaiI YATR 2 cut(s) 6, 214
FaqI GGGAC 1 cut(s) 183
FatI CATG 1 cut(s) 212
Fnu4HI GCNGC 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 1 cut(s) 144
GluI GCNGC 1 cut(s) 108
GsuI CTGGAG 1 cut(s) 132
Hin1II CATG 1 cut(s) 216
HphI GGTGA 1 cut(s) 176
Hpy188III TCNNGA 3 cut(s) 40, 53, 213
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 2 cut(s) 4, 36
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpySE526I ACGT 1 cut(s) 26
Hsp92II CATG 1 cut(s) 216
LguI GCTCTTC 1 cut(s) 78
LpnPI CCDG 5 cut(s) 66, 85, 96, 147, 174
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 1 cut(s) 45
MaeI CTAG 1 cut(s) 144
MaeII ACGT 1 cut(s) 26
MboII GAAGA 2 cut(s) 95, 139
MluCI AATT 2 cut(s) 91, 135
MnlI CCTC 2 cut(s) 117, 160
Mph1103I ATGCAT 1 cut(s) 6
MspR9I CCNGG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 140
NlaIII CATG 1 cut(s) 216
NlaIV GGNNCC 1 cut(s) 51
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 212
PciSI GCTCTTC 1 cut(s) 78
PkrI GCNGC 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 51
RsaI GTAC 2 cut(s) 25, 98
RsaNI GTAC 2 cut(s) 24, 97
SapI GCTCTTC 1 cut(s) 78
SatI GCNGC 1 cut(s) 108
ScrFI CCNGG 1 cut(s) 162
SetI ASST 2 cut(s) 29, 90
SfaNI GCATC 1 cut(s) 45
Sse9I AATT 2 cut(s) 91, 135
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 160
TaiI ACGT 1 cut(s) 29
TaqI TCGA 3 cut(s) 39, 81, 182
TasI AATT 2 cut(s) 91, 135
TatI WGTACW 1 cut(s) 96
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 1 cut(s) 201
XapI RAATTY 1 cut(s) 91
XspI CTAG 1 cut(s) 144
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.