Rmu_sc0028071.1_g000001

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0028071.1
OG0000444
Physical Location & Seq
Forward (+)
90 .. 1317
1228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0028071.1_g000001.1.cds

Sequence Viewer

Length: 747 bp
atgggatatgtatttggacgaatgtatcgaaaaaaagaaccaatcaagagagaacttgtcaagaaagaagaatatatggcttactggaatattatagattacaggtggcaaaaattatgggatcttcctcttcatgctgctggtttttaccttaatcccaagtttttctatagcatcacaggagaaatgcacaaagtgattatgtcaaagatgcttgactgcatagagaaattggttccagatttaaaagttcaagatgaaattagcaaagagataaacttgtacaaaaatgctgttggagatctggggaggaatttggccattagagccagagacactctgcttcccggtgaggatctctacttaattcagtgcaaggagaatcagattccttctgaccagttgcacaagacgaggaacagcttagggcatgaacggcttagtgattttgtctttgttcggtacaacttgcaactaagacagatggttcataagaacaaagagcatgagtatgtggatcctatatcatttgacaacactagcactgttgaagactggataacagagactgaaatgtacctagaagaccatgaaaatactgattggaaggcacttgatccgcccttttataattcaaggcttttagaactttcagttgatgaagctgaagacttgggttcagggtttgatcataacgagattttctttaacggattgcaagtggttaaagaagaaggcagaacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

248

Amino Acids

29.44

Weight (kDa)

5.26

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 630
AciI CCGC 1 cut(s) 620
AclWI GGATC 5 cut(s) 129, 363, 512, 525, 611
AcoI YGGCCR 1 cut(s) 318
AcsI RAATTY 1 cut(s) 313
AcuI CTGAAG 1 cut(s) 687
AdeI CACNNNGTG 1 cut(s) 196
AfaI GTAC 3 cut(s) 284, 464, 578
AgsI TTSAA 3 cut(s) 254, 551, 636
AluBI AGCT 2 cut(s) 423, 665
AluI AGCT 2 cut(s) 423, 665
Alw26I GTCTC 2 cut(s) 327, 560
AlwI GGATC 5 cut(s) 129, 363, 512, 525, 611
AlwNI CAGNNNCTG 1 cut(s) 569
AoxI GGCC 1 cut(s) 318
ApeKI GCWGC 1 cut(s) 137
ApoI RAATTY 1 cut(s) 313
AsuC2I CCSGG 1 cut(s) 348
AsuHPI GGTGA 1 cut(s) 362
BaeI ACNNNNGTAYC 2 cut(s) 8, 41
BalI TGGCCA 1 cut(s) 320
BamHI GGATCC 1 cut(s) 517
BbsI GAAGAC 3 cut(s) 558, 591, 675
BbvI GCAGC 1 cut(s) 124
BccI CCATC 1 cut(s) 478
BceAI ACGGC 1 cut(s) 452
BclI TGATCA 1 cut(s) 688
BcnI CCSGG 1 cut(s) 348
BcoDI GTCTC 2 cut(s) 327, 560
BfaI CTAG 2 cut(s) 540, 581
BfmI CTRYAG 1 cut(s) 169
BglII AGATCT 1 cut(s) 301
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 1 cut(s) 348
BmiI GGNNCC 2 cut(s) 237, 519
BmrFI CCNGG 1 cut(s) 348
BmsI GCATC 2 cut(s) 183, 201
BpiI GAAGAC 3 cut(s) 558, 591, 675
Bpu10I CCTNAGC 1 cut(s) 424
BpuMI CCSGG 1 cut(s) 348
Bse1I ACTGG 3 cut(s) 89, 400, 560
BseNI ACTGG 3 cut(s) 89, 400, 560
BseXI GCAGC 1 cut(s) 124
BshFI GGCC 1 cut(s) 320
BsiSI CCGG 1 cut(s) 348
BsmAI GTCTC 2 cut(s) 327, 560
BsnI GGCC 1 cut(s) 320
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 6 cut(s) 121, 301, 355, 517, 616, 688
BspACI CCGC 1 cut(s) 620
BspANI GGCC 1 cut(s) 320
BspLI GGNNCC 2 cut(s) 237, 519
BspPI GGATC 5 cut(s) 129, 363, 512, 525, 611
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 3 cut(s) 89, 400, 560
BssMI GATC 6 cut(s) 121, 301, 355, 517, 616, 688
Bst4CI ACNGT 1 cut(s) 547
Bst6I CTCTTC 1 cut(s) 135
BstAUI TGTACA 1 cut(s) 282
BstDEI CTNAG 3 cut(s) 424, 440, 476
BstKTI GATC 6 cut(s) 124, 304, 358, 520, 619, 691
BstMAI GTCTC 2 cut(s) 327, 560
BstMBI GATC 6 cut(s) 121, 301, 355, 517, 616, 688
BstMWI GCNNNNNNNGC 2 cut(s) 326, 436
BstSCI CCNGG 1 cut(s) 346
BstSFI CTRYAG 1 cut(s) 169
BstV1I GCAGC 1 cut(s) 124
BstV2I GAAGAC 3 cut(s) 558, 591, 675
BstX2I RGATCY 4 cut(s) 121, 301, 355, 517
BstYI RGATCY 4 cut(s) 121, 301, 355, 517
BsuRI GGCC 1 cut(s) 320
BtsIMutI CAGTG 2 cut(s) 377, 543
CaiI CAGNNNCTG 1 cut(s) 569
Csp6I GTAC 3 cut(s) 283, 463, 577
CviAII CATG 4 cut(s) 134, 431, 506, 590
CviJI RGCY 7 cut(s) 80, 320, 329, 423, 439, 640, 665
CviKI_1 RGCY 7 cut(s) 80, 320, 329, 423, 439, 640, 665
CviQI GTAC 3 cut(s) 283, 463, 577
DdeI CTNAG 3 cut(s) 424, 440, 476
DpnI GATC 6 cut(s) 123, 303, 357, 519, 618, 690
DpnII GATC 6 cut(s) 121, 301, 355, 517, 616, 688
DraI TTTAAA 1 cut(s) 246
DraIII CACNNNGTG 1 cut(s) 196
EaeI YGGCCR 1 cut(s) 318
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
EciI GGCGGA 1 cut(s) 609
Eco57I CTGAAG 1 cut(s) 687
FaeI CATG 4 cut(s) 137, 434, 509, 593
FatI CATG 4 cut(s) 133, 430, 505, 589
FbaI TGATCA 1 cut(s) 688
Fnu4HI GCNGC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 2 cut(s) 540, 581
GluI GCNGC 1 cut(s) 138
HaeIII GGCC 1 cut(s) 320
HapII CCGG 1 cut(s) 348
Hin1II CATG 4 cut(s) 137, 434, 509, 593
HinfI GANTC 2 cut(s) 382, 388
HpaII CCGG 1 cut(s) 348
HphI GGTGA 1 cut(s) 362
Hpy188I TCNGA 2 cut(s) 387, 397
Hpy188III TCNNGA 4 cut(s) 46, 61, 239, 254
HpyAV CCTTC 3 cut(s) 402, 601, 728
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4V TGCA 6 cut(s) 190, 222, 375, 406, 472, 718
HpyF10VI GCNNNNNNNGC 2 cut(s) 326, 436
HpyF3I CTNAG 3 cut(s) 424, 440, 476
Hsp92II CATG 4 cut(s) 137, 434, 509, 593
Ksp22I TGATCA 1 cut(s) 688
Kzo9I GATC 6 cut(s) 121, 301, 355, 517, 616, 688
Lsp1109I GCAGC 1 cut(s) 124
LweI GCATC 2 cut(s) 183, 201
MaeI CTAG 2 cut(s) 540, 581
MalI GATC 6 cut(s) 123, 303, 357, 519, 618, 690
MboI GATC 6 cut(s) 121, 301, 355, 517, 616, 688
MboII GAAGA 7 cut(s) 80, 116, 122, 563, 596, 680, 743
MflI RGATCY 4 cut(s) 121, 301, 355, 517
MlsI TGGCCA 1 cut(s) 320
MluCI AATT 6 cut(s) 113, 230, 261, 313, 366, 631
MluNI TGGCCA 1 cut(s) 320
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 4 cut(s) 138, 303, 346, 408
Mox20I TGGCCA 1 cut(s) 320
MscI TGGCCA 1 cut(s) 320
MseI TTAA 6 cut(s) 153, 245, 365, 708, 726, 745
MslI CAYNNNNRTG 1 cut(s) 510
Msp20I TGGCCA 1 cut(s) 320
MspI CCGG 1 cut(s) 348
MspR9I CCNGG 1 cut(s) 348
MwoI GCNNNNNNNGC 2 cut(s) 326, 436
NciI CCSGG 1 cut(s) 348
NdeII GATC 6 cut(s) 121, 301, 355, 517, 616, 688
NlaIII CATG 4 cut(s) 137, 434, 509, 593
NlaIV GGNNCC 2 cut(s) 237, 519
PcsI WCGNNNNNNNCGW 1 cut(s) 25
PfeI GAWTC 2 cut(s) 382, 388
PkrI GCNGC 1 cut(s) 139
PsiI TTATAA 1 cut(s) 630
PspN4I GGNNCC 2 cut(s) 237, 519
PstNI CAGNNNCTG 1 cut(s) 569
PsuI RGATCY 4 cut(s) 121, 301, 355, 517
RsaI GTAC 3 cut(s) 284, 464, 578
RsaNI GTAC 3 cut(s) 283, 463, 577
RseI CAYNNNNRTG 1 cut(s) 510
SaqAI TTAA 6 cut(s) 153, 245, 365, 708, 726, 745
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 6 cut(s) 121, 301, 355, 517, 616, 688
ScrFI CCNGG 1 cut(s) 348
SetI ASST 5 cut(s) 107, 153, 425, 582, 667
SfaNI GCATC 2 cut(s) 183, 201
SfcI CTRYAG 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 510
Sse9I AATT 6 cut(s) 113, 230, 261, 313, 366, 631
SsiI CCGC 1 cut(s) 620
SspI AATATT 1 cut(s) 91
SspMI CTAG 2 cut(s) 540, 581
StyD4I CCNGG 1 cut(s) 346
TaaI ACNGT 1 cut(s) 547
TaqI TCGA 1 cut(s) 28
TasI AATT 6 cut(s) 113, 230, 261, 313, 366, 631
TatI WGTACW 1 cut(s) 282
TfiI GAWTC 2 cut(s) 382, 388
Tru1I TTAA 6 cut(s) 153, 245, 365, 708, 726, 745
Tru9I TTAA 6 cut(s) 153, 245, 365, 708, 726, 745
TscAI CASTG 2 cut(s) 377, 550
TseI GCWGC 1 cut(s) 137
TspDTI ATGAA 6 cut(s) 122, 273, 447, 479, 606, 675
TspGWI ACGGA 1 cut(s) 726
TspRI CASTG 2 cut(s) 377, 550
XapI RAATTY 1 cut(s) 313
XspI CTAG 2 cut(s) 540, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.